Cow genome map

Conread name: rpigcb_7632.y1

Conread position: 18-553
Cow position: chr11:40457799-40458364 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 56

Conread position: 36-566
Cow position: chr11:31929106-31929637 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 38

Conread position: 45-584
Cow position: chr11:21471283-21471844 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 175

Conread position: 51-562
Cow position: chr11:17279916-17279409 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 70

Conread position: 53-555
Cow position: chr11:11990656-11991189 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 0

Conread position: 54-566
Cow position: chr11:7719855-7719315 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 18

Conread position: 55-551
Cow position: chr11:18146877-18146357 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 22

Conread position: 58-562
Cow position: chr11:21729353-21728824 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 51

Conread position: 60-526
Cow position: chr11:27922459-27922957 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 12

Conread position: 60-554
Cow position: chr11:10699080-10698557 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 12

Conread position: 60-554
Cow position: chr11:58805150-58804635 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 12

Conread position: 61-422
Cow position: chr11:40134141-40133773 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-424
Cow position: chr11:32478145-32477760 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-427
Cow position: chr11:64353655-64353267 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-449
Cow position: chr11:2568011-2567606 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 16

Conread position: 61-464
Cow position: chr11:29614059-29614484 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-494
Cow position: chr11:50834092-50833630 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 11

Conread position: 61-503
Cow position: chr11:26400148-26400618 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-524
Cow position: chr11:54728127-54728622 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 11

Conread position: 61-527
Cow position: chr11:41600021-41599526 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 11

Conread position: 61-532
Cow position: chr11:4053649-4053185 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 15

Conread position: 61-532
Cow position: chr11:22933951-22933460 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 11

Conread position: 61-540
Cow position: chr11:9707815-9708323 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-540
Cow position: chr11:10958498-10959004 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 11

Conread position: 61-540
Cow position: chr11:12177754-12178263 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-540
Cow position: chr11:12317403-12316895 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-540
Cow position: chr11:28631200-28631708 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-540
Cow position: chr11:72368720-72369229 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-550
Cow position: chr11:33688352-33687863 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 55

Conread position: 61-554
Cow position: chr11:2285380-2285902 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr11:3495710-3496232 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr11:6343128-6343648 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 11

Conread position: 61-554
Cow position: chr11:7121296-7120760 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr11:8444320-8443802 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr11:15835588-15836101 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr11:17105022-17104517 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr11:17548825-17549347 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr11:19061407-19060885 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr11:22618279-22617757 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr11:24494141-24493619 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr11:25809076-25808557 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 11

Conread position: 61-554
Cow position: chr11:27725234-27724712 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 11

Conread position: 61-554
Cow position: chr11:28125182-28125702 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr11:28227112-28226589 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr11:30929049-30929571 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr11:32876276-32875754 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr11:35142664-35142143 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr11:38574816-38574296 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr11:41261261-41260739 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr11:41313963-41314484 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr11:47973184-47972663 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr11:49936073-49935559 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 12

Conread position: 61-554
Cow position: chr11:50511005-50510483 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 11

Conread position: 61-554
Cow position: chr11:51033954-51034465 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 11

Conread position: 61-554
Cow position: chr11:52846144-52846664 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr11:53429355-53428834 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr11:57625509-57625001 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 11

Conread position: 61-554
Cow position: chr11:58136384-58136906 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr11:61397948-61397432 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr11:63390812-63390293 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 11

Conread position: 61-554
Cow position: chr11:67453322-67453842 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr11:67920665-67920153 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr11:73799031-73798513 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr11:75402836-75402333 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 11

Conread position: 61-554
Cow position: chr11:83284563-83285070 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 11

Conread position: 61-554
Cow position: chr11:84966781-84967297 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 11

Conread position: 61-555
Cow position: chr11:9388003-9388527 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 11

Conread position: 61-555
Cow position: chr11:29663382-29662873 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 11

Conread position: 61-555
Cow position: chr11:35738675-35738154 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-555
Cow position: chr11:56463029-56463553 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-562
Cow position: chr11:12354225-12353696 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-562
Cow position: chr11:14260291-14259765 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 11

Conread position: 61-562
Cow position: chr11:18920919-18920402 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 11

Conread position: 61-562
Cow position: chr11:19099818-19099289 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-562
Cow position: chr11:26122254-26121724 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 11

Conread position: 61-562
Cow position: chr11:32078112-32077587 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 11

Conread position: 61-562
Cow position: chr11:33601961-33601443 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-562
Cow position: chr11:36930855-36930338 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 11

Conread position: 61-562
Cow position: chr11:38640618-38641145 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 11

Conread position: 61-562
Cow position: chr11:41168027-41167498 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 11

Conread position: 61-562
Cow position: chr11:43511304-43510779 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 11

Conread position: 61-562
Cow position: chr11:44154411-44153887 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-562
Cow position: chr11:44580563-44580038 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 11

Conread position: 61-562
Cow position: chr11:48168400-48167885 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 11

Conread position: 61-562
Cow position: chr11:58139374-58139890 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 11

Conread position: 61-562
Cow position: chr11:65281686-65282206 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-562
Cow position: chr11:71332169-71332695 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 11

Conread position: 61-562
Cow position: chr11:85391178-85390666 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-563
Cow position: chr11:25564423-25564949 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 11

Conread position: 61-563
Cow position: chr11:40403092-40402572 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 7

Conread position: 61-563
Cow position: chr11:80789725-80789188 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 11

Conread position: 61-566
Cow position: chr11:1505330-1504796 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 12

Conread position: 61-566
Cow position: chr11:27659916-27660437 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 12

Conread position: 61-569
Cow position: chr11:4267486-4266948 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-569
Cow position: chr11:44106343-44106886 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-569
Cow position: chr11:44233102-44233625 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 11

Conread position: 61-569
Cow position: chr11:44254741-44255278 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-573
Cow position: chr11:84773834-84774374 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 11

Conread position: 61-582
Cow position: chr11:11256739-11257262 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 62-525
Cow position: chr11:48981963-48982449 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 10

Conread position: 62-562
Cow position: chr11:39151266-39151796 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 14

Conread position: 62-562
Cow position: chr11:58398999-58399523 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 11

Conread position: 62-566
Cow position: chr11:10850789-10851313 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 11

Conread position: 63-548
Cow position: chr11:23494439-23494928 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 9

Conread position: 63-550
Cow position: chr11:82346471-82345949 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 346
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 82, 157

Conread position: 63-552
Cow position: chr11:62575307-62574807 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 10

Conread position: 63-554
Cow position: chr11:20731555-20731034 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 495

Conread position: 63-554
Cow position: chr11:74928467-74928985 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 379

Conread position: 63-555
Cow position: chr11:15995153-15995684 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 9

Conread position: 63-555
Cow position: chr11:26550149-26550666 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 166

Conread position: 63-555
Cow position: chr11:38832811-38832289 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 185

Conread position: 63-562
Cow position: chr11:16229979-16229458 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 478

Conread position: 63-562
Cow position: chr11:67296341-67295811 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 14

Conread position: 63-566
Cow position: chr11:59871484-59872010 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 228

Conread position: 63-571
Cow position: chr11:11591651-11592185 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 50

Conread position: 68-572
Cow position: chr11:1667300-1667830 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 271

Conread position: 72-491
Cow position: chr11:50267070-50267515 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 288
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 82, 99

Conread position: 72-510
Cow position: chr11:81067426-81067884 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 258

Conread position: 72-524
Cow position: chr11:14469202-14469657 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 23

Conread position: 72-553
Cow position: chr11:58050247-58049739 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 11

Conread position: 72-554
Cow position: chr11:32454731-32455243 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 0

Conread position: 72-554
Cow position: chr11:35542391-35541881 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 414

Conread position: 72-554
Cow position: chr11:38600023-38599525 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 53

Conread position: 72-555
Cow position: chr11:31865310-31865826 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 0

Conread position: 72-557
Cow position: chr11:3795916-3796414 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 99

Conread position: 72-563
Cow position: chr11:45652236-45651730 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 329
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 72, 99

Conread position: 72-572
Cow position: chr11:27834080-27833550 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 433

Conread position: 73-494
Cow position: chr11:63652984-63652548 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 6

Conread position: 73-528
Cow position: chr11:66731813-66732285 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 26

Conread position: 73-554
Cow position: chr11:17853772-17854283 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 0

Conread position: 73-554
Cow position: chr11:63860965-63860455 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 374

Conread position: 73-555
Cow position: chr11:30201015-30200509 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 276

Conread position: 73-555
Cow position: chr11:49171820-49171306 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 453

Conread position: 73-566
Cow position: chr11:62791573-62792094 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 431

Conread position: 73-584
Cow position: chr11:17980613-17980075 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 150

Conread position: 75-562
Cow position: chr11:10365709-10365206 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 416

Conread position: 76-562
Cow position: chr11:13087986-13087471 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 510

Conread position: 77-554
Cow position: chr11:67599259-67599759 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 24

Conread position: 77-554
Cow position: chr11:86578611-86579114 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 65

Conread position: 78-553
Cow position: chr11:49037714-49037224 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 322
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 85, 262

Conread position: 78-562
Cow position: chr11:8830084-8829588 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 240

Conread position: 79-552
Cow position: chr11:260463-259957 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 140

Conread position: 80-562
Cow position: chr11:40486843-40487349 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 238

Conread position: 80-566
Cow position: chr11:5273887-5273374 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 19

Conread position: 81-562
Cow position: chr11:41094175-41093666 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 18

Conread position: 81-569
Cow position: chr11:33733892-33733382 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 51

Conread position: 83-551
Cow position: chr11:7330278-7330741 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 307
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 71, 87

Conread position: 83-569
Cow position: chr11:25335828-25336345 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 457

Conread position: 85-569
Cow position: chr11:41106698-41106190 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 0

Conread position: 86-563
Cow position: chr11:10872134-10871623 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 90-552
Cow position: chr11:73513671-73513186 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 13

Conread position: 97-436
Cow position: chr11:41177623-41177980 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 30

Conread position: 97-554
Cow position: chr11:26593075-26592588 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 0

Conread position: 97-572
Cow position: chr11:417771-417263 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 448

Conread position: 98-554
Cow position: chr11:15495093-15495577 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 98-566
Cow position: chr11:30056915-30057399 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 77

Conread position: 98-569
Cow position: chr11:75353906-75354414 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 0

Conread position: 99-554
Cow position: chr11:43362009-43361542 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 111

Conread position: 99-569
Cow position: chr11:48427852-48428347 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 223

Conread position: 105-493
Cow position: chr11:59444836-59444418 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 106-562
Cow position: chr11:40773341-40772874 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 10

Conread position: 109-480
Cow position: chr11:30190468-30190861 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 268
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 51, 72

Conread position: 111-540
Cow position: chr11:17998215-17997759 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 62

Conread position: 112-562
Cow position: chr11:44915969-44915489 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 69

Conread position: 120-592
Cow position: chr11:57185090-57185585 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 0

Conread position: 121-428
Cow position: chr11:24600716-24601038 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 224
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 32, 0

Conread position: 121-563
Cow position: chr11:35242145-35241681 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 370

Conread position: 122-554
Cow position: chr11:30776690-30777152 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 127-554
Cow position: chr11:30255162-30255627 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 131-554
Cow position: chr11:16548214-16547761 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 131-554
Cow position: chr11:34638768-34638315 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 131-555
Cow position: chr11:9154160-9153717 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 155

Conread position: 139-554
Cow position: chr11:65760862-65760418 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 300

Conread position: 141-509
Cow position: chr11:8551554-8551949 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 270
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 14, 0

Conread position: 141-554
Cow position: chr11:25759499-25759931 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 357

Conread position: 148-451
Cow position: chr11:52127965-52128288 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 0

Conread position: 148-554
Cow position: chr11:20285862-20285429 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 0

Conread position: 148-554
Cow position: chr11:24334237-24333804 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 0

Conread position: 159-563
Cow position: chr11:17782260-17781833 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 283

Conread position: 162-554
Cow position: chr11:3238071-3238491 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 0

Conread position: 164-554
Cow position: chr11:83000801-83001218 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 0

Conread position: 165-562
Cow position: chr11:63167725-63167324 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 78

Conread position: 177-555
Cow position: chr11:67849196-67848782 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 0

Conread position: 178-562
Cow position: chr11:74990406-74990816 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 405

Conread position: 182-427
Cow position: chr11:10043293-10043028 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 0

Conread position: 185-477
Cow position: chr11:35426029-35425723 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 138

Conread position: 185-554
Cow position: chr11:11316039-11315640 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 0

Conread position: 185-554
Cow position: chr11:54302330-54302726 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 0

Conread position: 185-562
Cow position: chr11:59369240-59368839 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 396

Conread position: 185-566
Cow position: chr11:80591153-80591557 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 386

Conread position: 186-552
Cow position: chr11:10873390-10873759 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 243
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 78, 137

Conread position: 188-562
Cow position: chr11:21619938-21620337 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 17

Conread position: 199-436
Cow position: chr11:65852350-65852093 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 197
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 65, 0

Conread position: 200-559
Cow position: chr11:21853433-21853057 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 0

Conread position: 200-562
Cow position: chr11:77748876-77749247 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 33

Conread position: 202-566
Cow position: chr11:7229171-7229560 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 7

Conread position: 204-553
Cow position: chr11:63507320-63507697 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 267
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 60, 143

Conread position: 213-512
Cow position: chr11:87155177-87154863 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 114

Conread position: 216-552
Cow position: chr11:84532436-84532080 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 245
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 33, 106

Conread position: 216-562
Cow position: chr11:23883171-23883543 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 367

Conread position: 218-511
Cow position: chr11:59583256-59583576 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 218-554
Cow position: chr11:66390181-66389826 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 310

Conread position: 218-554
Cow position: chr11:67744214-67744570 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 248
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 47, 22

Conread position: 218-554
Cow position: chr11:75711427-75711064 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 0

Conread position: 218-566
Cow position: chr11:62009976-62009601 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 366

Conread position: 221-516
Cow position: chr11:52515353-52515658 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 234
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 13, 91

Conread position: 221-554
Cow position: chr11:8366389-8366749 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 222-540
Cow position: chr11:38505401-38505056 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 0

Conread position: 222-570
Cow position: chr11:53855379-53855735 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 228
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 96, 30

Conread position: 227-518
Cow position: chr11:15988123-15988441 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 0

Conread position: 247-457
Cow position: chr11:15128646-15128864 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 165
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 118, 19

Conread position: 253-521
Cow position: chr11:45155876-45155592 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 0

Conread position: 253-532
Cow position: chr11:68130282-68130568 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 228

Conread position: 253-554
Cow position: chr11:15047330-15047648 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 0

Conread position: 253-557
Cow position: chr11:8844048-8844371 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 219
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 61, 44

Conread position: 253-560
Cow position: chr11:7151871-7152190 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 264

Conread position: 253-562
Cow position: chr11:31836061-31836380 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 44

Conread position: 253-562
Cow position: chr11:70030292-70030615 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 89

Conread position: 253-563
Cow position: chr11:26482443-26482771 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 66

Conread position: 253-566
Cow position: chr11:5584565-5584244 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 93

Conread position: 259-541
Cow position: chr11:44893997-44893699 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 68

Conread position: 260-569
Cow position: chr11:56652360-56652039 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 9

Conread position: 261-451
Cow position: chr11:31487111-31487303 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 154
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 116, 46

Conread position: 261-562
Cow position: chr11:8242227-8241911 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 204
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 23, 0

Conread position: 261-562
Cow position: chr11:48411401-48411724 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 233
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 11, 318

Conread position: 261-563
Cow position: chr11:32762331-32762653 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 283

Conread position: 262-563
Cow position: chr11:34299031-34298725 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 223
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 127, 48

Conread position: 263-554
Cow position: chr11:31834380-31834072 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 263-562
Cow position: chr11:69403340-69403025 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 224
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 115, 87

Conread position: 265-564
Cow position: chr11:56227812-56228131 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 231
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 114, 157

Conread position: 267-522
Cow position: chr11:16119057-16118791 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 180
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 82, 208

Conread position: 269-554
Cow position: chr11:2294173-2293871 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 0

Conread position: 271-554
Cow position: chr11:20601238-20601500 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 205
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 220, 30

Conread position: 274-554
Cow position: chr11:4734175-4734472 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 0

Conread position: 276-562
Cow position: chr11:3230218-3230516 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 212
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 93, 286

Conread position: 277-554
Cow position: chr11:30087771-30088065 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 0

Conread position: 278-552
Cow position: chr11:38235873-38235583 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 165

Conread position: 283-554
Cow position: chr11:47758087-47757799 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 0

Conread position: 284-571
Cow position: chr11:9432288-9432578 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 37

Conread position: 284-577
Cow position: chr11:1626253-1625949 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 217
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 9, 269

Conread position: 292-540
Cow position: chr11:21372171-21371906 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 0

Conread position: 293-554
Cow position: chr11:61132042-61131764 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 208
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 92, 0

Conread position: 294-563
Cow position: chr11:75256102-75256392 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 216
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 91, 0

Conread position: 295-562
Cow position: chr11:12111840-12112123 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 200
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 80, 0

Conread position: 297-554
Cow position: chr11:23904197-23904471 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 199
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 88, 0

Conread position: 297-562
Cow position: chr11:77034177-77033896 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 208
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 88, 276

Conread position: 297-572
Cow position: chr11:43917349-43917644 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 210
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 88, 0

Conread position: 301-495
Cow position: chr11:32956897-32956685 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 162
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 73, 0

Conread position: 301-495
Cow position: chr11:32978083-32977871 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 162
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 73, 0

Conread position: 302-562
Cow position: chr11:53772603-53772863 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 8

Conread position: 303-562
Cow position: chr11:8246113-8246380 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 200
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 76, 9

Conread position: 304-554
Cow position: chr11:38638403-38638139 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 188
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 74, 0

Conread position: 307-540
Cow position: chr11:74389124-74389374 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 184
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 78, 0

Conread position: 309-553
Cow position: chr11:70602350-70602095 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 27

Conread position: 309-554
Cow position: chr11:2801332-2801070 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 197
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 76, 0

Conread position: 311-562
Cow position: chr11:8498996-8499263 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 204
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 69, 18

Conread position: 315-554
Cow position: chr11:63261274-63261017 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 190
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 65, 0

Conread position: 316-554
Cow position: chr11:47573602-47573347 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 184
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 69, 0

Conread position: 330-566
Cow position: chr11:66859040-66858782 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 191
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 55, 249

Conread position: 338-566
Cow position: chr11:48658687-48658931 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 179
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 47, 20

Conread position: 342-554
Cow position: chr11:47845726-47845955 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 165
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 43, 0

Conread position: 342-555
Cow position: chr11:37345903-37346133 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 173
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 44, 0

Conread position: 344-554
Cow position: chr11:24045798-24045569 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 164
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 41, 0

Conread position: 344-554
Cow position: chr11:46143024-46142797 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 164
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 41, 0

Conread position: 346-515
Cow position: chr11:7307018-7307199 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 34, 0

Conread position: 381-530
Cow position: chr11:8266851-8267007 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 68, 0

Conread position: 384-562
Cow position: chr11:76370828-76370648 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 144
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 66, 150

Conread position: 386-524
Cow position: chr11:33687458-33687313 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 115
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 63, 0

Conread position: 386-553
Cow position: chr11:64047400-64047574 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 124
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 61, 0

Conread position: 386-553
Cow position: chr11:81576666-81576494 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 130
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 57, 0

Conread position: 386-554
Cow position: chr11:4596581-4596756 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 63, 0

Conread position: 386-554
Cow position: chr11:10100062-10100237 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 130
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 63, 0

Conread position: 386-554
Cow position: chr11:21820386-21820212 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 130
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 61, 0

Conread position: 386-554
Cow position: chr11:24397384-24397209 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 57, 0

Conread position: 386-554
Cow position: chr11:33189585-33189760 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 132
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 57, 0

Conread position: 386-554
Cow position: chr11:50282396-50282221 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 62, 0

Conread position: 386-554
Cow position: chr11:54303917-54304092 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 131
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 57, 0

Conread position: 386-554
Cow position: chr11:56916708-56916534 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 126
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 63, 30

Conread position: 386-554
Cow position: chr11:66664405-66664231 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 132
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 63, 88

Conread position: 386-562
Cow position: chr11:9079320-9079145 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 83, 69

Conread position: 386-562
Cow position: chr11:51477650-51477832 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 136
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 65, 0

Conread position: 386-564
Cow position: chr11:26467319-26467497 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 135
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 61, 120

Conread position: 386-566
Cow position: chr11:14650222-14650036 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 143
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 64, 177

Conread position: 387-554
Cow position: chr11:65410084-65409911 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 136
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 33, 132

Conread position: 388-557
Cow position: chr11:25332720-25332546 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 127
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 54, 0

Conread position: 389-562
Cow position: chr11:64904104-64904284 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 58, 168

Conread position: 391-554
Cow position: chr11:40139551-40139382 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 123
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 53, 0

Conread position: 392-529
Cow position: chr11:35361802-35361946 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 56, 0

Conread position: 392-541
Cow position: chr11:37304209-37304364 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 120
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 56, 0

Conread position: 395-562
Cow position: chr11:75196120-75195948 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 130
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 54, 11

Conread position: 396-554
Cow position: chr11:35861350-35861187 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 54, 152

Conread position: 398-562
Cow position: chr11:45632932-45632760 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 130
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 52, 0

Show alignments to all cow chromosomes.