Cow genome map

Conread name: rpigcb_7632.y1

Conread position: 7-554
Cow position: chr27:8290743-8291314 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 89

Conread position: 60-554
Cow position: chr27:31249196-31249705 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 12

Conread position: 60-588
Cow position: chr27:11434126-11434679 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 12

Conread position: 61-447
Cow position: chr27:9990258-9989843 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 11

Conread position: 61-501
Cow position: chr27:13308595-13309064 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-510
Cow position: chr27:27278677-27279143 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 16

Conread position: 61-522
Cow position: chr27:27045134-27045615 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 16

Conread position: 61-524
Cow position: chr27:1082211-1081720 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr27:165969-165447 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 11

Conread position: 61-554
Cow position: chr27:5913889-5914400 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 11

Conread position: 61-554
Cow position: chr27:5984079-5983557 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr27:8960078-8959543 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr27:10578897-10579416 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 11

Conread position: 61-554
Cow position: chr27:16031446-16030924 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr27:22797706-22797186 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr27:29036418-29035909 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-555
Cow position: chr27:3232583-3232060 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 11

Conread position: 61-555
Cow position: chr27:27291341-27291867 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-562
Cow position: chr27:1536132-1536650 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 11

Conread position: 61-562
Cow position: chr27:2000796-2001325 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 11

Conread position: 61-562
Cow position: chr27:4982323-4982852 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-562
Cow position: chr27:8972395-8972924 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 15

Conread position: 61-562
Cow position: chr27:19523757-19523230 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-562
Cow position: chr27:21451396-21451923 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 11

Conread position: 61-562
Cow position: chr27:26329884-26330412 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-569
Cow position: chr27:8426809-8427338 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 11

Conread position: 61-569
Cow position: chr27:13353257-13353797 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-569
Cow position: chr27:26784773-26785306 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 15

Conread position: 62-555
Cow position: chr27:25801253-25800737 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 10

Conread position: 62-569
Cow position: chr27:2558039-2557503 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 10

Conread position: 63-571
Cow position: chr27:5925224-5925751 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 371

Conread position: 67-557
Cow position: chr27:15405600-15406098 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 23

Conread position: 69-553
Cow position: chr27:25784795-25784289 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 151

Conread position: 72-424
Cow position: chr27:15543976-15544351 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 0

Conread position: 72-562
Cow position: chr27:344962-344450 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 233

Conread position: 72-562
Cow position: chr27:8200899-8201415 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 100

Conread position: 75-555
Cow position: chr27:19932598-19932083 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 41

Conread position: 84-562
Cow position: chr27:3990827-3990320 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 502

Conread position: 84-562
Cow position: chr27:19424405-19423898 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 49

Conread position: 86-571
Cow position: chr27:30307293-30306779 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 146

Conread position: 88-562
Cow position: chr27:11480908-11481411 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 498

Conread position: 90-566
Cow position: chr27:14380300-14380787 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 104

Conread position: 94-554
Cow position: chr27:1188649-1189135 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 0

Conread position: 98-540
Cow position: chr27:14297194-14297666 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 0

Conread position: 104-554
Cow position: chr27:3653706-3653227 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 0

Conread position: 106-444
Cow position: chr27:28051784-28051429 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 244
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 159, 62

Conread position: 121-532
Cow position: chr27:8592409-8592837 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 132

Conread position: 131-554
Cow position: chr27:12006168-12006621 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 140-562
Cow position: chr27:22329525-22329970 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 312
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 13, 58

Conread position: 148-554
Cow position: chr27:6524239-6523807 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 300
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 26, 69

Conread position: 152-557
Cow position: chr27:26552337-26551917 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 53

Conread position: 155-447
Cow position: chr27:20001463-20001764 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 169

Conread position: 155-553
Cow position: chr27:13183216-13182813 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 110

Conread position: 163-562
Cow position: chr27:30782960-30783383 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 293
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 98, 29

Conread position: 179-562
Cow position: chr27:14669268-14669671 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 281
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 86, 144

Conread position: 187-562
Cow position: chr27:15033812-15033411 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 396

Conread position: 199-567
Cow position: chr27:9263185-9262792 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 267
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 40, 22

Conread position: 201-515
Cow position: chr27:15697443-15697777 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 130

Conread position: 206-452
Cow position: chr27:16627457-16627722 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 181
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 36, 0

Conread position: 253-540
Cow position: chr27:22647477-22647173 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 0

Conread position: 253-554
Cow position: chr27:9970326-9970644 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 0

Conread position: 253-555
Cow position: chr27:9332833-9333141 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 44

Conread position: 253-562
Cow position: chr27:2681678-2682000 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 72

Conread position: 253-562
Cow position: chr27:10383603-10383911 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 22

Conread position: 253-562
Cow position: chr27:13901279-13901604 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 320

Conread position: 253-572
Cow position: chr27:21350005-21350341 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 241
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 110, 25

Conread position: 259-562
Cow position: chr27:15867134-15866823 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 89

Conread position: 260-571
Cow position: chr27:30036031-30036360 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 327

Conread position: 261-562
Cow position: chr27:2331666-2331983 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 312

Conread position: 261-563
Cow position: chr27:24239951-24239649 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 210
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 185, 94

Conread position: 270-547
Cow position: chr27:16788124-16787832 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 37

Conread position: 278-439
Cow position: chr27:27469352-27469183 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 78, 0

Conread position: 279-569
Cow position: chr27:24054889-24055173 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 216
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 106, 57

Conread position: 290-552
Cow position: chr27:25112354-25112627 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 195
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 68, 229

Conread position: 308-562
Cow position: chr27:12239278-12239547 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 203
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 77, 178

Conread position: 315-554
Cow position: chr27:3649698-3649954 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 187
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 70, 0

Conread position: 319-540
Cow position: chr27:30677858-30677627 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 170
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 64, 33

Conread position: 327-524
Cow position: chr27:17476978-17476763 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 158
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 52, 0

Conread position: 330-566
Cow position: chr27:16332246-16331995 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 187
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 55, 235

Conread position: 331-554
Cow position: chr27:15099875-15100114 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 172
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 54, 180

Conread position: 335-545
Cow position: chr27:24205897-24205671 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 168
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 50, 220

Conread position: 382-554
Cow position: chr27:13422870-13422691 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 130
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 61, 0

Conread position: 386-538
Cow position: chr27:26599173-26599012 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 126
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 63, 0

Conread position: 386-553
Cow position: chr27:4834444-4834616 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 126
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 64, 10

Conread position: 386-554
Cow position: chr27:791748-791573 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 57, 0

Conread position: 386-555
Cow position: chr27:19300268-19300092 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 124
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 64, 0

Conread position: 386-555
Cow position: chr27:28984067-28984239 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 128
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 63, 98

Conread position: 390-562
Cow position: chr27:8262140-8262318 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 132
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 63, 0

Conread position: 392-554
Cow position: chr27:2936130-2936294 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 124
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 55, 105

Conread position: 396-553
Cow position: chr27:10324618-10324457 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 126
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 54, 81

Show alignments to all cow chromosomes.