Cow genome map
| Conread name: | rpigcb_7632.y1 | 
| Conread position: | 18-554 | 
| Cow position: | chr3:72175465-72174902 (view UCSC Genome Browser custom track) | 
| Alignm length: | 565 | 
| Alignm identity: | 375 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 135, 116 | 
| Conread position: | 50-447 | 
| Cow position: | chr3:32412618-32412196 (view UCSC Genome Browser custom track) | 
| Alignm length: | 424 | 
| Alignm identity: | 279 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 43, 5 | 
| Conread position: | 54-550 | 
| Cow position: | chr3:67545719-67545240 (view UCSC Genome Browser custom track) | 
| Alignm length: | 507 | 
| Alignm identity: | 361 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 96, 19 | 
| Conread position: | 56-525 | 
| Cow position: | chr3:22724894-22724396 (view UCSC Genome Browser custom track) | 
| Alignm length: | 502 | 
| Alignm identity: | 359 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 96, 16 | 
| Conread position: | 56-529 | 
| Cow position: | chr3:76187409-76187917 (view UCSC Genome Browser custom track) | 
| Alignm length: | 513 | 
| Alignm identity: | 374 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 16 | 
| Conread position: | 59-562 | 
| Cow position: | chr3:56148172-56148706 (view UCSC Genome Browser custom track) | 
| Alignm length: | 537 | 
| Alignm identity: | 398 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 92, 40 | 
| Conread position: | 59-562 | 
| Cow position: | chr3:72632952-72633483 (view UCSC Genome Browser custom track) | 
| Alignm length: | 534 | 
| Alignm identity: | 405 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 86, 13 | 
| Conread position: | 60-520 | 
| Cow position: | chr3:19947103-19947569 (view UCSC Genome Browser custom track) | 
| Alignm length: | 482 | 
| Alignm identity: | 360 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 20, 12 | 
| Conread position: | 60-524 | 
| Cow position: | chr3:24573280-24572797 (view UCSC Genome Browser custom track) | 
| Alignm length: | 496 | 
| Alignm identity: | 369 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 67, 12 | 
| Conread position: | 60-553 | 
| Cow position: | chr3:49611327-49610808 (view UCSC Genome Browser custom track) | 
| Alignm length: | 525 | 
| Alignm identity: | 391 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 12 | 
| Conread position: | 60-557 | 
| Cow position: | chr3:14284615-14285136 (view UCSC Genome Browser custom track) | 
| Alignm length: | 528 | 
| Alignm identity: | 402 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 12 | 
| Conread position: | 60-562 | 
| Cow position: | chr3:58950342-58950869 (view UCSC Genome Browser custom track) | 
| Alignm length: | 532 | 
| Alignm identity: | 400 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 90, 12 | 
| Conread position: | 60-566 | 
| Cow position: | chr3:2904556-2904042 (view UCSC Genome Browser custom track) | 
| Alignm length: | 527 | 
| Alignm identity: | 410 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 12 | 
| Conread position: | 60-566 | 
| Cow position: | chr3:24455635-24455123 (view UCSC Genome Browser custom track) | 
| Alignm length: | 527 | 
| Alignm identity: | 358 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 88, 12 | 
| Conread position: | 60-566 | 
| Cow position: | chr3:45977383-45977914 (view UCSC Genome Browser custom track) | 
| Alignm length: | 537 | 
| Alignm identity: | 395 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 12 | 
| Conread position: | 60-566 | 
| Cow position: | chr3:69930953-69930422 (view UCSC Genome Browser custom track) | 
| Alignm length: | 536 | 
| Alignm identity: | 400 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 12 | 
| Conread position: | 60-569 | 
| Cow position: | chr3:23010253-23010774 (view UCSC Genome Browser custom track) | 
| Alignm length: | 534 | 
| Alignm identity: | 401 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 12 | 
| Conread position: | 61-427 | 
| Cow position: | chr3:6713889-6714278 (view UCSC Genome Browser custom track) | 
| Alignm length: | 391 | 
| Alignm identity: | 298 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 11 | 
| Conread position: | 61-441 | 
| Cow position: | chr3:22338790-22339190 (view UCSC Genome Browser custom track) | 
| Alignm length: | 403 | 
| Alignm identity: | 304 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 95, 11 | 
| Conread position: | 61-441 | 
| Cow position: | chr3:37280277-37280679 (view UCSC Genome Browser custom track) | 
| Alignm length: | 404 | 
| Alignm identity: | 309 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-448 | 
| Cow position: | chr3:19798270-19797862 (view UCSC Genome Browser custom track) | 
| Alignm length: | 411 | 
| Alignm identity: | 310 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-451 | 
| Cow position: | chr3:40285434-40285025 (view UCSC Genome Browser custom track) | 
| Alignm length: | 411 | 
| Alignm identity: | 314 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-475 | 
| Cow position: | chr3:63239132-63238711 (view UCSC Genome Browser custom track) | 
| Alignm length: | 436 | 
| Alignm identity: | 324 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 204, 11 | 
| Conread position: | 61-477 | 
| Cow position: | chr3:31121261-31120810 (view UCSC Genome Browser custom track) | 
| Alignm length: | 453 | 
| Alignm identity: | 338 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 41, 11 | 
| Conread position: | 61-501 | 
| Cow position: | chr3:21004697-21005167 (view UCSC Genome Browser custom track) | 
| Alignm length: | 476 | 
| Alignm identity: | 354 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 11 | 
| Conread position: | 61-501 | 
| Cow position: | chr3:43084124-43084590 (view UCSC Genome Browser custom track) | 
| Alignm length: | 468 | 
| Alignm identity: | 359 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-510 | 
| Cow position: | chr3:66736683-66736213 (view UCSC Genome Browser custom track) | 
| Alignm length: | 474 | 
| Alignm identity: | 354 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 11 | 
| Conread position: | 61-517 | 
| Cow position: | chr3:68510454-68509972 (view UCSC Genome Browser custom track) | 
| Alignm length: | 484 | 
| Alignm identity: | 367 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-522 | 
| Cow position: | chr3:2790633-2791119 (view UCSC Genome Browser custom track) | 
| Alignm length: | 492 | 
| Alignm identity: | 376 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 90, 11 | 
| Conread position: | 61-524 | 
| Cow position: | chr3:1739991-1739499 (view UCSC Genome Browser custom track) | 
| Alignm length: | 494 | 
| Alignm identity: | 372 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-524 | 
| Cow position: | chr3:49463671-49463177 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 364 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 11 | 
| Conread position: | 61-524 | 
| Cow position: | chr3:66830057-66829572 (view UCSC Genome Browser custom track) | 
| Alignm length: | 487 | 
| Alignm identity: | 367 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 86, 11 | 
| Conread position: | 61-524 | 
| Cow position: | chr3:68697083-68696592 (view UCSC Genome Browser custom track) | 
| Alignm length: | 494 | 
| Alignm identity: | 368 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-525 | 
| Cow position: | chr3:54087489-54087001 (view UCSC Genome Browser custom track) | 
| Alignm length: | 492 | 
| Alignm identity: | 360 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-532 | 
| Cow position: | chr3:24351593-24352068 (view UCSC Genome Browser custom track) | 
| Alignm length: | 493 | 
| Alignm identity: | 349 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 175, 7 | 
| Conread position: | 61-532 | 
| Cow position: | chr3:30321131-30321638 (view UCSC Genome Browser custom track) | 
| Alignm length: | 511 | 
| Alignm identity: | 382 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 76, 11 | 
| Conread position: | 61-540 | 
| Cow position: | chr3:2572409-2572917 (view UCSC Genome Browser custom track) | 
| Alignm length: | 510 | 
| Alignm identity: | 389 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-540 | 
| Cow position: | chr3:29574244-29573738 (view UCSC Genome Browser custom track) | 
| Alignm length: | 510 | 
| Alignm identity: | 382 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-540 | 
| Cow position: | chr3:32490831-32490323 (view UCSC Genome Browser custom track) | 
| Alignm length: | 510 | 
| Alignm identity: | 388 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-540 | 
| Cow position: | chr3:33269120-33269613 (view UCSC Genome Browser custom track) | 
| Alignm length: | 507 | 
| Alignm identity: | 376 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 202, 11 | 
| Conread position: | 61-540 | 
| Cow position: | chr3:42977702-42977203 (view UCSC Genome Browser custom track) | 
| Alignm length: | 504 | 
| Alignm identity: | 380 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-540 | 
| Cow position: | chr3:45311674-45312168 (view UCSC Genome Browser custom track) | 
| Alignm length: | 501 | 
| Alignm identity: | 376 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 11 | 
| Conread position: | 61-540 | 
| Cow position: | chr3:47272998-47272489 (view UCSC Genome Browser custom track) | 
| Alignm length: | 511 | 
| Alignm identity: | 384 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 11 | 
| Conread position: | 61-540 | 
| Cow position: | chr3:66968997-66968490 (view UCSC Genome Browser custom track) | 
| Alignm length: | 509 | 
| Alignm identity: | 377 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 88, 11 | 
| Conread position: | 61-551 | 
| Cow position: | chr3:15663555-15663048 (view UCSC Genome Browser custom track) | 
| Alignm length: | 510 | 
| Alignm identity: | 354 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 15 | 
| Conread position: | 61-552 | 
| Cow position: | chr3:33326263-33326791 (view UCSC Genome Browser custom track) | 
| Alignm length: | 529 | 
| Alignm identity: | 369 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 0 | 
| Conread position: | 61-552 | 
| Cow position: | chr3:35885232-35884719 (view UCSC Genome Browser custom track) | 
| Alignm length: | 521 | 
| Alignm identity: | 382 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 115, 11 | 
| Conread position: | 61-552 | 
| Cow position: | chr3:70914383-70913867 (view UCSC Genome Browser custom track) | 
| Alignm length: | 518 | 
| Alignm identity: | 387 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 91, 465 | 
| Conread position: | 61-553 | 
| Cow position: | chr3:19883352-19883861 (view UCSC Genome Browser custom track) | 
| Alignm length: | 514 | 
| Alignm identity: | 375 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-553 | 
| Cow position: | chr3:46505650-46506171 (view UCSC Genome Browser custom track) | 
| Alignm length: | 523 | 
| Alignm identity: | 372 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-554 | 
| Cow position: | chr3:823209-822686 (view UCSC Genome Browser custom track) | 
| Alignm length: | 525 | 
| Alignm identity: | 389 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-554 | 
| Cow position: | chr3:2866773-2866251 (view UCSC Genome Browser custom track) | 
| Alignm length: | 524 | 
| Alignm identity: | 394 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 11 | 
| Conread position: | 61-554 | 
| Cow position: | chr3:5474420-5474943 (view UCSC Genome Browser custom track) | 
| Alignm length: | 525 | 
| Alignm identity: | 396 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 75, 11 | 
| Conread position: | 61-554 | 
| Cow position: | chr3:6528874-6529396 (view UCSC Genome Browser custom track) | 
| Alignm length: | 524 | 
| Alignm identity: | 396 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-554 | 
| Cow position: | chr3:6837911-6838433 (view UCSC Genome Browser custom track) | 
| Alignm length: | 524 | 
| Alignm identity: | 395 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-554 | 
| Cow position: | chr3:7246222-7245702 (view UCSC Genome Browser custom track) | 
| Alignm length: | 524 | 
| Alignm identity: | 396 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-554 | 
| Cow position: | chr3:12798169-12797658 (view UCSC Genome Browser custom track) | 
| Alignm length: | 524 | 
| Alignm identity: | 378 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-554 | 
| Cow position: | chr3:13723831-13723308 (view UCSC Genome Browser custom track) | 
| Alignm length: | 525 | 
| Alignm identity: | 394 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-554 | 
| Cow position: | chr3:14679969-14680491 (view UCSC Genome Browser custom track) | 
| Alignm length: | 524 | 
| Alignm identity: | 396 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-554 | 
| Cow position: | chr3:16225759-16226278 (view UCSC Genome Browser custom track) | 
| Alignm length: | 523 | 
| Alignm identity: | 391 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-554 | 
| Cow position: | chr3:16294028-16293513 (view UCSC Genome Browser custom track) | 
| Alignm length: | 524 | 
| Alignm identity: | 403 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 52, 11 | 
| Conread position: | 61-554 | 
| Cow position: | chr3:18862323-18862844 (view UCSC Genome Browser custom track) | 
| Alignm length: | 524 | 
| Alignm identity: | 396 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-554 | 
| Cow position: | chr3:20795175-20795697 (view UCSC Genome Browser custom track) | 
| Alignm length: | 524 | 
| Alignm identity: | 388 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-554 | 
| Cow position: | chr3:21593166-21593686 (view UCSC Genome Browser custom track) | 
| Alignm length: | 523 | 
| Alignm identity: | 388 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 95, 11 | 
| Conread position: | 61-554 | 
| Cow position: | chr3:26993008-26993528 (view UCSC Genome Browser custom track) | 
| Alignm length: | 524 | 
| Alignm identity: | 380 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 11 | 
| Conread position: | 61-554 | 
| Cow position: | chr3:27866540-27867065 (view UCSC Genome Browser custom track) | 
| Alignm length: | 532 | 
| Alignm identity: | 388 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-554 | 
| Cow position: | chr3:28435817-28435295 (view UCSC Genome Browser custom track) | 
| Alignm length: | 524 | 
| Alignm identity: | 392 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-554 | 
| Cow position: | chr3:30616055-30615537 (view UCSC Genome Browser custom track) | 
| Alignm length: | 524 | 
| Alignm identity: | 394 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 11 | 
| Conread position: | 61-554 | 
| Cow position: | chr3:31021564-31022083 (view UCSC Genome Browser custom track) | 
| Alignm length: | 522 | 
| Alignm identity: | 386 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 92, 11 | 
| Conread position: | 61-554 | 
| Cow position: | chr3:34504241-34503732 (view UCSC Genome Browser custom track) | 
| Alignm length: | 513 | 
| Alignm identity: | 390 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-554 | 
| Cow position: | chr3:35612036-35612551 (view UCSC Genome Browser custom track) | 
| Alignm length: | 525 | 
| Alignm identity: | 387 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-554 | 
| Cow position: | chr3:37893715-37894235 (view UCSC Genome Browser custom track) | 
| Alignm length: | 524 | 
| Alignm identity: | 394 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-554 | 
| Cow position: | chr3:40521058-40520536 (view UCSC Genome Browser custom track) | 
| Alignm length: | 524 | 
| Alignm identity: | 399 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 99, 11 | 
| Conread position: | 61-554 | 
| Cow position: | chr3:43525857-43525336 (view UCSC Genome Browser custom track) | 
| Alignm length: | 524 | 
| Alignm identity: | 383 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-554 | 
| Cow position: | chr3:46224777-46225283 (view UCSC Genome Browser custom track) | 
| Alignm length: | 516 | 
| Alignm identity: | 353 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 88, 11 | 
| Conread position: | 61-554 | 
| Cow position: | chr3:46858401-46857880 (view UCSC Genome Browser custom track) | 
| Alignm length: | 524 | 
| Alignm identity: | 387 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-554 | 
| Cow position: | chr3:47078732-47078209 (view UCSC Genome Browser custom track) | 
| Alignm length: | 525 | 
| Alignm identity: | 389 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-554 | 
| Cow position: | chr3:49605557-49605039 (view UCSC Genome Browser custom track) | 
| Alignm length: | 523 | 
| Alignm identity: | 399 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 11 | 
| Conread position: | 61-554 | 
| Cow position: | chr3:49908141-49907629 (view UCSC Genome Browser custom track) | 
| Alignm length: | 515 | 
| Alignm identity: | 376 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 90, 11 | 
| Conread position: | 61-554 | 
| Cow position: | chr3:52150404-52149882 (view UCSC Genome Browser custom track) | 
| Alignm length: | 524 | 
| Alignm identity: | 394 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-554 | 
| Cow position: | chr3:56297266-56297788 (view UCSC Genome Browser custom track) | 
| Alignm length: | 524 | 
| Alignm identity: | 392 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 91, 11 | 
| Conread position: | 61-554 | 
| Cow position: | chr3:66888314-66887794 (view UCSC Genome Browser custom track) | 
| Alignm length: | 524 | 
| Alignm identity: | 392 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-554 | 
| Cow position: | chr3:68717827-68717307 (view UCSC Genome Browser custom track) | 
| Alignm length: | 524 | 
| Alignm identity: | 379 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-554 | 
| Cow position: | chr3:68870868-68870347 (view UCSC Genome Browser custom track) | 
| Alignm length: | 524 | 
| Alignm identity: | 388 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 92, 11 | 
| Conread position: | 61-554 | 
| Cow position: | chr3:68889690-68889169 (view UCSC Genome Browser custom track) | 
| Alignm length: | 524 | 
| Alignm identity: | 384 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-554 | 
| Cow position: | chr3:73636763-73637283 (view UCSC Genome Browser custom track) | 
| Alignm length: | 522 | 
| Alignm identity: | 388 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-554 | 
| Cow position: | chr3:76864313-76864835 (view UCSC Genome Browser custom track) | 
| Alignm length: | 524 | 
| Alignm identity: | 398 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-554 | 
| Cow position: | chr3:83767135-83767649 (view UCSC Genome Browser custom track) | 
| Alignm length: | 517 | 
| Alignm identity: | 374 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 92, 11 | 
| Conread position: | 61-555 | 
| Cow position: | chr3:24265084-24265603 (view UCSC Genome Browser custom track) | 
| Alignm length: | 521 | 
| Alignm identity: | 393 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-555 | 
| Cow position: | chr3:40826279-40826801 (view UCSC Genome Browser custom track) | 
| Alignm length: | 526 | 
| Alignm identity: | 401 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-555 | 
| Cow position: | chr3:50346701-50347212 (view UCSC Genome Browser custom track) | 
| Alignm length: | 517 | 
| Alignm identity: | 376 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 87, 11 | 
| Conread position: | 61-555 | 
| Cow position: | chr3:57455845-57456349 (view UCSC Genome Browser custom track) | 
| Alignm length: | 515 | 
| Alignm identity: | 382 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-555 | 
| Cow position: | chr3:75038960-75038437 (view UCSC Genome Browser custom track) | 
| Alignm length: | 525 | 
| Alignm identity: | 400 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-556 | 
| Cow position: | chr3:24586347-24585826 (view UCSC Genome Browser custom track) | 
| Alignm length: | 526 | 
| Alignm identity: | 396 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-558 | 
| Cow position: | chr3:6864549-6865066 (view UCSC Genome Browser custom track) | 
| Alignm length: | 528 | 
| Alignm identity: | 387 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-560 | 
| Cow position: | chr3:64376827-64376307 (view UCSC Genome Browser custom track) | 
| Alignm length: | 530 | 
| Alignm identity: | 397 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-562 | 
| Cow position: | chr3:596999-597518 (view UCSC Genome Browser custom track) | 
| Alignm length: | 531 | 
| Alignm identity: | 389 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 20, 11 | 
| Conread position: | 61-562 | 
| Cow position: | chr3:6688695-6689240 (view UCSC Genome Browser custom track) | 
| Alignm length: | 548 | 
| Alignm identity: | 395 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 36, 11 | 
| Conread position: | 61-562 | 
| Cow position: | chr3:7477039-7476509 (view UCSC Genome Browser custom track) | 
| Alignm length: | 534 | 
| Alignm identity: | 402 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 83, 11 | 
| Conread position: | 61-562 | 
| Cow position: | chr3:10243543-10244070 (view UCSC Genome Browser custom track) | 
| Alignm length: | 530 | 
| Alignm identity: | 406 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 90, 11 | 
| Conread position: | 61-562 | 
| Cow position: | chr3:18353480-18352956 (view UCSC Genome Browser custom track) | 
| Alignm length: | 532 | 
| Alignm identity: | 360 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 11 | 
| Conread position: | 61-562 | 
| Cow position: | chr3:18814388-18814916 (view UCSC Genome Browser custom track) | 
| Alignm length: | 531 | 
| Alignm identity: | 407 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-562 | 
| Cow position: | chr3:19753846-19753324 (view UCSC Genome Browser custom track) | 
| Alignm length: | 526 | 
| Alignm identity: | 389 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 239 | 
| Conread position: | 61-562 | 
| Cow position: | chr3:21179377-21178846 (view UCSC Genome Browser custom track) | 
| Alignm length: | 534 | 
| Alignm identity: | 408 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-562 | 
| Cow position: | chr3:23204791-23204266 (view UCSC Genome Browser custom track) | 
| Alignm length: | 532 | 
| Alignm identity: | 394 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 88, 11 | 
| Conread position: | 61-562 | 
| Cow position: | chr3:23287453-23286926 (view UCSC Genome Browser custom track) | 
| Alignm length: | 532 | 
| Alignm identity: | 394 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-562 | 
| Cow position: | chr3:29129978-29130503 (view UCSC Genome Browser custom track) | 
| Alignm length: | 529 | 
| Alignm identity: | 383 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 90, 15 | 
| Conread position: | 61-562 | 
| Cow position: | chr3:36875185-36874650 (view UCSC Genome Browser custom track) | 
| Alignm length: | 538 | 
| Alignm identity: | 399 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 87, 11 | 
| Conread position: | 61-562 | 
| Cow position: | chr3:38095781-38096311 (view UCSC Genome Browser custom track) | 
| Alignm length: | 533 | 
| Alignm identity: | 393 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 91, 11 | 
| Conread position: | 61-562 | 
| Cow position: | chr3:40048771-40049299 (view UCSC Genome Browser custom track) | 
| Alignm length: | 531 | 
| Alignm identity: | 403 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-562 | 
| Cow position: | chr3:42846235-42846754 (view UCSC Genome Browser custom track) | 
| Alignm length: | 527 | 
| Alignm identity: | 401 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 202, 11 | 
| Conread position: | 61-562 | 
| Cow position: | chr3:48603133-48603672 (view UCSC Genome Browser custom track) | 
| Alignm length: | 542 | 
| Alignm identity: | 397 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-562 | 
| Cow position: | chr3:55373972-55374486 (view UCSC Genome Browser custom track) | 
| Alignm length: | 524 | 
| Alignm identity: | 376 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 107, 11 | 
| Conread position: | 61-562 | 
| Cow position: | chr3:61677420-61677947 (view UCSC Genome Browser custom track) | 
| Alignm length: | 532 | 
| Alignm identity: | 407 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-562 | 
| Cow position: | chr3:63736271-63736802 (view UCSC Genome Browser custom track) | 
| Alignm length: | 535 | 
| Alignm identity: | 385 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-562 | 
| Cow position: | chr3:64653551-64654079 (view UCSC Genome Browser custom track) | 
| Alignm length: | 532 | 
| Alignm identity: | 396 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-562 | 
| Cow position: | chr3:65988805-65989320 (view UCSC Genome Browser custom track) | 
| Alignm length: | 525 | 
| Alignm identity: | 388 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 99, 11 | 
| Conread position: | 61-562 | 
| Cow position: | chr3:72669680-72669149 (view UCSC Genome Browser custom track) | 
| Alignm length: | 534 | 
| Alignm identity: | 399 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 11 | 
| Conread position: | 61-562 | 
| Cow position: | chr3:78024548-78024029 (view UCSC Genome Browser custom track) | 
| Alignm length: | 532 | 
| Alignm identity: | 393 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-562 | 
| Cow position: | chr3:81100962-81101489 (view UCSC Genome Browser custom track) | 
| Alignm length: | 531 | 
| Alignm identity: | 401 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 99, 11 | 
| Conread position: | 61-563 | 
| Cow position: | chr3:24443212-24442690 (view UCSC Genome Browser custom track) | 
| Alignm length: | 525 | 
| Alignm identity: | 401 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-563 | 
| Cow position: | chr3:43190388-43189860 (view UCSC Genome Browser custom track) | 
| Alignm length: | 533 | 
| Alignm identity: | 405 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 91, 11 | 
| Conread position: | 61-566 | 
| Cow position: | chr3:7856307-7856836 (view UCSC Genome Browser custom track) | 
| Alignm length: | 536 | 
| Alignm identity: | 387 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 96, 11 | 
| Conread position: | 61-566 | 
| Cow position: | chr3:18886347-18886872 (view UCSC Genome Browser custom track) | 
| Alignm length: | 535 | 
| Alignm identity: | 390 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 99, 11 | 
| Conread position: | 61-566 | 
| Cow position: | chr3:19941773-19942297 (view UCSC Genome Browser custom track) | 
| Alignm length: | 533 | 
| Alignm identity: | 386 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 11 | 
| Conread position: | 61-569 | 
| Cow position: | chr3:2834657-2834117 (view UCSC Genome Browser custom track) | 
| Alignm length: | 542 | 
| Alignm identity: | 402 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 61-569 | 
| Cow position: | chr3:37627777-37628304 (view UCSC Genome Browser custom track) | 
| Alignm length: | 536 | 
| Alignm identity: | 381 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 11 | 
| Conread position: | 61-569 | 
| Cow position: | chr3:63202130-63202656 (view UCSC Genome Browser custom track) | 
| Alignm length: | 537 | 
| Alignm identity: | 374 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 92, 27 | 
| Conread position: | 61-585 | 
| Cow position: | chr3:35342532-35343085 (view UCSC Genome Browser custom track) | 
| Alignm length: | 555 | 
| Alignm identity: | 384 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 62-540 | 
| Cow position: | chr3:49134654-49134147 (view UCSC Genome Browser custom track) | 
| Alignm length: | 509 | 
| Alignm identity: | 352 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 92, 10 | 
| Conread position: | 62-545 | 
| Cow position: | chr3:27245805-27245298 (view UCSC Genome Browser custom track) | 
| Alignm length: | 515 | 
| Alignm identity: | 379 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 92, 14 | 
| Conread position: | 62-554 | 
| Cow position: | chr3:40337260-40336742 (view UCSC Genome Browser custom track) | 
| Alignm length: | 523 | 
| Alignm identity: | 389 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 92, 10 | 
| Conread position: | 62-554 | 
| Cow position: | chr3:49563894-49564420 (view UCSC Genome Browser custom track) | 
| Alignm length: | 529 | 
| Alignm identity: | 391 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 68, 10 | 
| Conread position: | 63-532 | 
| Cow position: | chr3:63148754-63148259 (view UCSC Genome Browser custom track) | 
| Alignm length: | 500 | 
| Alignm identity: | 352 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 9 | 
| Conread position: | 63-552 | 
| Cow position: | chr3:19108446-19108959 (view UCSC Genome Browser custom track) | 
| Alignm length: | 519 | 
| Alignm identity: | 351 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 115 | 
| Conread position: | 63-554 | 
| Cow position: | chr3:4030637-4031145 (view UCSC Genome Browser custom track) | 
| Alignm length: | 515 | 
| Alignm identity: | 363 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 117 | 
| Conread position: | 63-554 | 
| Cow position: | chr3:19880933-19881453 (view UCSC Genome Browser custom track) | 
| Alignm length: | 522 | 
| Alignm identity: | 392 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 91, 14 | 
| Conread position: | 63-554 | 
| Cow position: | chr3:53880383-53879863 (view UCSC Genome Browser custom track) | 
| Alignm length: | 522 | 
| Alignm identity: | 388 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 91, 9 | 
| Conread position: | 63-554 | 
| Cow position: | chr3:65473314-65473830 (view UCSC Genome Browser custom track) | 
| Alignm length: | 522 | 
| Alignm identity: | 389 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 87, 9 | 
| Conread position: | 63-555 | 
| Cow position: | chr3:3837703-3837202 (view UCSC Genome Browser custom track) | 
| Alignm length: | 515 | 
| Alignm identity: | 380 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 132 | 
| Conread position: | 63-563 | 
| Cow position: | chr3:74060356-74060885 (view UCSC Genome Browser custom track) | 
| Alignm length: | 535 | 
| Alignm identity: | 398 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 91, 10 | 
| Conread position: | 63-566 | 
| Cow position: | chr3:5951732-5951209 (view UCSC Genome Browser custom track) | 
| Alignm length: | 526 | 
| Alignm identity: | 386 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 86, 13 | 
| Conread position: | 63-566 | 
| Cow position: | chr3:64875669-64876187 (view UCSC Genome Browser custom track) | 
| Alignm length: | 530 | 
| Alignm identity: | 382 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 202, 9 | 
| Conread position: | 63-569 | 
| Cow position: | chr3:3552208-3552737 (view UCSC Genome Browser custom track) | 
| Alignm length: | 533 | 
| Alignm identity: | 390 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 92, 9 | 
| Conread position: | 63-569 | 
| Cow position: | chr3:20379835-20379296 (view UCSC Genome Browser custom track) | 
| Alignm length: | 540 | 
| Alignm identity: | 401 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 11, 0 | 
| Conread position: | 63-570 | 
| Cow position: | chr3:56645448-56644911 (view UCSC Genome Browser custom track) | 
| Alignm length: | 539 | 
| Alignm identity: | 399 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 92, 523 | 
| Conread position: | 63-592 | 
| Cow position: | chr3:50920918-50921485 (view UCSC Genome Browser custom track) | 
| Alignm length: | 569 | 
| Alignm identity: | 410 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 41, 378 | 
| Conread position: | 64-540 | 
| Cow position: | chr3:45185099-45184598 (view UCSC Genome Browser custom track) | 
| Alignm length: | 505 | 
| Alignm identity: | 388 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 90, 305 | 
| Conread position: | 65-553 | 
| Cow position: | chr3:26742987-26742470 (view UCSC Genome Browser custom track) | 
| Alignm length: | 519 | 
| Alignm identity: | 392 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 7 | 
| Conread position: | 66-554 | 
| Cow position: | chr3:56102635-56103143 (view UCSC Genome Browser custom track) | 
| Alignm length: | 515 | 
| Alignm identity: | 370 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 198, 6 | 
| Conread position: | 72-439 | 
| Cow position: | chr3:34027983-34027593 (view UCSC Genome Browser custom track) | 
| Alignm length: | 391 | 
| Alignm identity: | 288 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 82, 0 | 
| Conread position: | 72-452 | 
| Cow position: | chr3:44100940-44101347 (view UCSC Genome Browser custom track) | 
| Alignm length: | 409 | 
| Alignm identity: | 314 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 91, 6 | 
| Conread position: | 72-476 | 
| Cow position: | chr3:18759530-18759100 (view UCSC Genome Browser custom track) | 
| Alignm length: | 431 | 
| Alignm identity: | 308 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 77, 0 | 
| Conread position: | 72-520 | 
| Cow position: | chr3:63688998-63688542 (view UCSC Genome Browser custom track) | 
| Alignm length: | 470 | 
| Alignm identity: | 338 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 79, 167 | 
| Conread position: | 72-525 | 
| Cow position: | chr3:31418427-31418909 (view UCSC Genome Browser custom track) | 
| Alignm length: | 490 | 
| Alignm identity: | 373 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 82, 11 | 
| Conread position: | 72-552 | 
| Cow position: | chr3:32220616-32221112 (view UCSC Genome Browser custom track) | 
| Alignm length: | 501 | 
| Alignm identity: | 359 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 82, 322 | 
| Conread position: | 72-552 | 
| Cow position: | chr3:38869465-38869968 (view UCSC Genome Browser custom track) | 
| Alignm length: | 505 | 
| Alignm identity: | 382 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 78, 280 | 
| Conread position: | 72-553 | 
| Cow position: | chr3:58034745-58034264 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 374 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 82, 367 | 
| Conread position: | 72-554 | 
| Cow position: | chr3:7155915-7155403 (view UCSC Genome Browser custom track) | 
| Alignm length: | 513 | 
| Alignm identity: | 391 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 82, 0 | 
| Conread position: | 72-557 | 
| Cow position: | chr3:26566676-26567182 (view UCSC Genome Browser custom track) | 
| Alignm length: | 516 | 
| Alignm identity: | 356 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 82, 40 | 
| Conread position: | 72-561 | 
| Cow position: | chr3:54654285-54653763 (view UCSC Genome Browser custom track) | 
| Alignm length: | 525 | 
| Alignm identity: | 395 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 68, 104 | 
| Conread position: | 72-562 | 
| Cow position: | chr3:57742408-57742922 (view UCSC Genome Browser custom track) | 
| Alignm length: | 520 | 
| Alignm identity: | 391 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 82, 161 | 
| Conread position: | 73-551 | 
| Cow position: | chr3:56101162-56101652 (view UCSC Genome Browser custom track) | 
| Alignm length: | 501 | 
| Alignm identity: | 335 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 87, 167 | 
| Conread position: | 73-553 | 
| Cow position: | chr3:11384209-11384715 (view UCSC Genome Browser custom track) | 
| Alignm length: | 509 | 
| Alignm identity: | 381 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 51, 263 | 
| Conread position: | 74-554 | 
| Cow position: | chr3:2074682-2075184 (view UCSC Genome Browser custom track) | 
| Alignm length: | 508 | 
| Alignm identity: | 361 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 191, 44 | 
| Conread position: | 74-554 | 
| Cow position: | chr3:50204468-50204968 (view UCSC Genome Browser custom track) | 
| Alignm length: | 510 | 
| Alignm identity: | 377 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 80, 7 | 
| Conread position: | 75-523 | 
| Cow position: | chr3:74848270-74847808 (view UCSC Genome Browser custom track) | 
| Alignm length: | 464 | 
| Alignm identity: | 333 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 75, 322 | 
| Conread position: | 75-554 | 
| Cow position: | chr3:13035601-13035092 (view UCSC Genome Browser custom track) | 
| Alignm length: | 510 | 
| Alignm identity: | 379 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 79, 0 | 
| Conread position: | 75-566 | 
| Cow position: | chr3:13312111-13311587 (view UCSC Genome Browser custom track) | 
| Alignm length: | 526 | 
| Alignm identity: | 384 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 78, 518 | 
| Conread position: | 76-478 | 
| Cow position: | chr3:39856359-39856783 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 318 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 78, 412 | 
| Conread position: | 76-554 | 
| Cow position: | chr3:11417442-11417950 (view UCSC Genome Browser custom track) | 
| Alignm length: | 509 | 
| Alignm identity: | 382 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 78, 0 | 
| Conread position: | 79-532 | 
| Cow position: | chr3:60178201-60177722 (view UCSC Genome Browser custom track) | 
| Alignm length: | 484 | 
| Alignm identity: | 326 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 48, 53 | 
| Conread position: | 79-562 | 
| Cow position: | chr3:31934438-31933927 (view UCSC Genome Browser custom track) | 
| Alignm length: | 514 | 
| Alignm identity: | 373 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 70, 226 | 
| Conread position: | 81-444 | 
| Cow position: | chr3:523020-523376 (view UCSC Genome Browser custom track) | 
| Alignm length: | 374 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 1e-39 | 
| Alignm gaps (pig, cow): | 73, 119 | 
| Conread position: | 81-553 | 
| Cow position: | chr3:23170292-23169823 (view UCSC Genome Browser custom track) | 
| Alignm length: | 483 | 
| Alignm identity: | 342 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 69, 90 | 
| Conread position: | 85-563 | 
| Cow position: | chr3:78519952-78520464 (view UCSC Genome Browser custom track) | 
| Alignm length: | 513 | 
| Alignm identity: | 380 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 68, 0 | 
| Conread position: | 92-562 | 
| Cow position: | chr3:84198706-84199183 (view UCSC Genome Browser custom track) | 
| Alignm length: | 493 | 
| Alignm identity: | 344 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 57, 41 | 
| Conread position: | 97-448 | 
| Cow position: | chr3:2366637-2366275 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 3e-26 | 
| Alignm gaps (pig, cow): | 203, 0 | 
| Conread position: | 97-540 | 
| Cow position: | chr3:68273757-68274230 (view UCSC Genome Browser custom track) | 
| Alignm length: | 474 | 
| Alignm identity: | 360 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 57, 0 | 
| Conread position: | 97-562 | 
| Cow position: | chr3:48272696-48273189 (view UCSC Genome Browser custom track) | 
| Alignm length: | 495 | 
| Alignm identity: | 369 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 57, 488 | 
| Conread position: | 97-577 | 
| Cow position: | chr3:53047876-53047368 (view UCSC Genome Browser custom track) | 
| Alignm length: | 515 | 
| Alignm identity: | 381 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 39 | 
| Conread position: | 100-456 | 
| Cow position: | chr3:33692126-33691750 (view UCSC Genome Browser custom track) | 
| Alignm length: | 378 | 
| Alignm identity: | 245 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 157, 70 | 
| Conread position: | 105-456 | 
| Cow position: | chr3:34116439-34116073 (view UCSC Genome Browser custom track) | 
| Alignm length: | 372 | 
| Alignm identity: | 263 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 160, 52 | 
| Conread position: | 106-554 | 
| Cow position: | chr3:20475439-20475911 (view UCSC Genome Browser custom track) | 
| Alignm length: | 473 | 
| Alignm identity: | 348 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 45, 0 | 
| Conread position: | 109-554 | 
| Cow position: | chr3:41019385-41018907 (view UCSC Genome Browser custom track) | 
| Alignm length: | 479 | 
| Alignm identity: | 357 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 45, 0 | 
| Conread position: | 109-562 | 
| Cow position: | chr3:77726389-77726848 (view UCSC Genome Browser custom track) | 
| Alignm length: | 469 | 
| Alignm identity: | 314 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 41, 236 | 
| Conread position: | 116-554 | 
| Cow position: | chr3:65084870-65085337 (view UCSC Genome Browser custom track) | 
| Alignm length: | 469 | 
| Alignm identity: | 344 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 331 | 
| Conread position: | 122-554 | 
| Cow position: | chr3:47986383-47986843 (view UCSC Genome Browser custom track) | 
| Alignm length: | 463 | 
| Alignm identity: | 345 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 65 | 
| Conread position: | 127-557 | 
| Cow position: | chr3:25056636-25057087 (view UCSC Genome Browser custom track) | 
| Alignm length: | 459 | 
| Alignm identity: | 347 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 27, 226 | 
| Conread position: | 127-566 | 
| Cow position: | chr3:36671674-36671203 (view UCSC Genome Browser custom track) | 
| Alignm length: | 473 | 
| Alignm identity: | 346 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 27, 462 | 
| Conread position: | 130-426 | 
| Cow position: | chr3:46899728-46900039 (view UCSC Genome Browser custom track) | 
| Alignm length: | 317 | 
| Alignm identity: | 226 | 
| Alignm E-value: | 3e-37 | 
| Alignm gaps (pig, cow): | 24, 201 | 
| Conread position: | 130-553 | 
| Cow position: | chr3:27454983-27454534 (view UCSC Genome Browser custom track) | 
| Alignm length: | 450 | 
| Alignm identity: | 338 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 23, 0 | 
| Conread position: | 131-554 | 
| Cow position: | chr3:35918515-35918962 (view UCSC Genome Browser custom track) | 
| Alignm length: | 449 | 
| Alignm identity: | 329 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 23, 434 | 
| Conread position: | 131-554 | 
| Cow position: | chr3:36121126-36121579 (view UCSC Genome Browser custom track) | 
| Alignm length: | 454 | 
| Alignm identity: | 334 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 23, 0 | 
| Conread position: | 131-554 | 
| Cow position: | chr3:49930786-49931239 (view UCSC Genome Browser custom track) | 
| Alignm length: | 454 | 
| Alignm identity: | 338 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 23, 0 | 
| Conread position: | 131-566 | 
| Cow position: | chr3:6442020-6442483 (view UCSC Genome Browser custom track) | 
| Alignm length: | 466 | 
| Alignm identity: | 343 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 20, 46 | 
| Conread position: | 136-554 | 
| Cow position: | chr3:49732839-49732396 (view UCSC Genome Browser custom track) | 
| Alignm length: | 449 | 
| Alignm identity: | 340 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 164 | 
| Conread position: | 136-562 | 
| Cow position: | chr3:12676685-12676229 (view UCSC Genome Browser custom track) | 
| Alignm length: | 461 | 
| Alignm identity: | 320 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 18, 234 | 
| Conread position: | 139-554 | 
| Cow position: | chr3:42508250-42507810 (view UCSC Genome Browser custom track) | 
| Alignm length: | 442 | 
| Alignm identity: | 329 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 303 | 
| Conread position: | 139-562 | 
| Cow position: | chr3:31396333-31396778 (view UCSC Genome Browser custom track) | 
| Alignm length: | 454 | 
| Alignm identity: | 338 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 103 | 
| Conread position: | 140-569 | 
| Cow position: | chr3:6785279-6785735 (view UCSC Genome Browser custom track) | 
| Alignm length: | 457 | 
| Alignm identity: | 296 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 77, 0 | 
| Conread position: | 142-562 | 
| Cow position: | chr3:19215878-19216311 (view UCSC Genome Browser custom track) | 
| Alignm length: | 442 | 
| Alignm identity: | 331 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 21, 245 | 
| Conread position: | 142-567 | 
| Cow position: | chr3:21000127-20999656 (view UCSC Genome Browser custom track) | 
| Alignm length: | 473 | 
| Alignm identity: | 343 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 12, 454 | 
| Conread position: | 146-553 | 
| Cow position: | chr3:12667675-12668103 (view UCSC Genome Browser custom track) | 
| Alignm length: | 433 | 
| Alignm identity: | 322 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 119, 19 | 
| Conread position: | 146-569 | 
| Cow position: | chr3:23497789-23497340 (view UCSC Genome Browser custom track) | 
| Alignm length: | 451 | 
| Alignm identity: | 335 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 119, 439 | 
| Conread position: | 147-567 | 
| Cow position: | chr3:4039961-4039514 (view UCSC Genome Browser custom track) | 
| Alignm length: | 450 | 
| Alignm identity: | 347 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 118, 27 | 
| Conread position: | 148-553 | 
| Cow position: | chr3:7773029-7772632 (view UCSC Genome Browser custom track) | 
| Alignm length: | 417 | 
| Alignm identity: | 297 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 53, 49 | 
| Conread position: | 148-554 | 
| Cow position: | chr3:14212361-14212794 (view UCSC Genome Browser custom track) | 
| Alignm length: | 434 | 
| Alignm identity: | 321 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 117, 0 | 
| Conread position: | 148-566 | 
| Cow position: | chr3:35619528-35619967 (view UCSC Genome Browser custom track) | 
| Alignm length: | 446 | 
| Alignm identity: | 328 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 115, 211 | 
| Conread position: | 155-562 | 
| Cow position: | chr3:30351253-30351686 (view UCSC Genome Browser custom track) | 
| Alignm length: | 435 | 
| Alignm identity: | 326 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 110, 412 | 
| Conread position: | 155-566 | 
| Cow position: | chr3:14863862-14864297 (view UCSC Genome Browser custom track) | 
| Alignm length: | 439 | 
| Alignm identity: | 332 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 110, 191 | 
| Conread position: | 158-554 | 
| Cow position: | chr3:35109207-35109630 (view UCSC Genome Browser custom track) | 
| Alignm length: | 424 | 
| Alignm identity: | 277 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 107, 0 | 
| Conread position: | 162-549 | 
| Cow position: | chr3:12673383-12672980 (view UCSC Genome Browser custom track) | 
| Alignm length: | 405 | 
| Alignm identity: | 288 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 80, 16 | 
| Conread position: | 162-563 | 
| Cow position: | chr3:33125270-33124842 (view UCSC Genome Browser custom track) | 
| Alignm length: | 429 | 
| Alignm identity: | 327 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 101, 0 | 
| Conread position: | 163-477 | 
| Cow position: | chr3:4191951-4191610 (view UCSC Genome Browser custom track) | 
| Alignm length: | 342 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 102, 0 | 
| Conread position: | 163-495 | 
| Cow position: | chr3:69962868-69962501 (view UCSC Genome Browser custom track) | 
| Alignm length: | 372 | 
| Alignm identity: | 276 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 88 | 
| Conread position: | 163-555 | 
| Cow position: | chr3:19718273-19717864 (view UCSC Genome Browser custom track) | 
| Alignm length: | 411 | 
| Alignm identity: | 300 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 82, 197 | 
| Conread position: | 167-562 | 
| Cow position: | chr3:18575618-18575215 (view UCSC Genome Browser custom track) | 
| Alignm length: | 411 | 
| Alignm identity: | 277 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 55, 99 | 
| Conread position: | 170-507 | 
| Cow position: | chr3:2432660-2432298 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 268 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 95, 0 | 
| Conread position: | 170-562 | 
| Cow position: | chr3:73451321-73450903 (view UCSC Genome Browser custom track) | 
| Alignm length: | 420 | 
| Alignm identity: | 325 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 413 | 
| Conread position: | 170-569 | 
| Cow position: | chr3:53646313-53645916 (view UCSC Genome Browser custom track) | 
| Alignm length: | 408 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 145, 55 | 
| Conread position: | 171-554 | 
| Cow position: | chr3:55245537-55245947 (view UCSC Genome Browser custom track) | 
| Alignm length: | 411 | 
| Alignm identity: | 308 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 0 | 
| Conread position: | 177-524 | 
| Cow position: | chr3:3300635-3301015 (view UCSC Genome Browser custom track) | 
| Alignm length: | 381 | 
| Alignm identity: | 283 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 52, 0 | 
| Conread position: | 177-553 | 
| Cow position: | chr3:8391384-8391758 (view UCSC Genome Browser custom track) | 
| Alignm length: | 384 | 
| Alignm identity: | 265 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 201, 67 | 
| Conread position: | 177-566 | 
| Cow position: | chr3:54863621-54863206 (view UCSC Genome Browser custom track) | 
| Alignm length: | 419 | 
| Alignm identity: | 305 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 84, 39 | 
| Conread position: | 178-487 | 
| Cow position: | chr3:2627184-2627500 (view UCSC Genome Browser custom track) | 
| Alignm length: | 322 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 79, 102 | 
| Conread position: | 178-554 | 
| Cow position: | chr3:45675777-45675374 (view UCSC Genome Browser custom track) | 
| Alignm length: | 404 | 
| Alignm identity: | 305 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 87, 0 | 
| Conread position: | 178-554 | 
| Cow position: | chr3:79668108-79668514 (view UCSC Genome Browser custom track) | 
| Alignm length: | 407 | 
| Alignm identity: | 308 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 64, 0 | 
| Conread position: | 178-562 | 
| Cow position: | chr3:37983364-37982955 (view UCSC Genome Browser custom track) | 
| Alignm length: | 412 | 
| Alignm identity: | 284 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 86, 55 | 
| Conread position: | 179-566 | 
| Cow position: | chr3:59602803-59603216 (view UCSC Genome Browser custom track) | 
| Alignm length: | 415 | 
| Alignm identity: | 306 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 84, 404 | 
| Conread position: | 180-552 | 
| Cow position: | chr3:56160814-56160423 (view UCSC Genome Browser custom track) | 
| Alignm length: | 398 | 
| Alignm identity: | 297 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 68, 151 | 
| Conread position: | 180-562 | 
| Cow position: | chr3:49387655-49388060 (view UCSC Genome Browser custom track) | 
| Alignm length: | 411 | 
| Alignm identity: | 310 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 84, 151 | 
| Conread position: | 187-557 | 
| Cow position: | chr3:62794067-62793675 (view UCSC Genome Browser custom track) | 
| Alignm length: | 393 | 
| Alignm identity: | 276 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 23, 0 | 
| Conread position: | 188-562 | 
| Cow position: | chr3:52257504-52257114 (view UCSC Genome Browser custom track) | 
| Alignm length: | 391 | 
| Alignm identity: | 266 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 77, 0 | 
| Conread position: | 191-562 | 
| Cow position: | chr3:49416834-49416436 (view UCSC Genome Browser custom track) | 
| Alignm length: | 400 | 
| Alignm identity: | 304 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 72, 393 | 
| Conread position: | 191-566 | 
| Cow position: | chr3:40004465-40004095 (view UCSC Genome Browser custom track) | 
| Alignm length: | 381 | 
| Alignm identity: | 292 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 53, 135 | 
| Conread position: | 193-562 | 
| Cow position: | chr3:14438969-14438577 (view UCSC Genome Browser custom track) | 
| Alignm length: | 396 | 
| Alignm identity: | 289 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 53, 139 | 
| Conread position: | 194-435 | 
| Cow position: | chr3:36571158-36571415 (view UCSC Genome Browser custom track) | 
| Alignm length: | 259 | 
| Alignm identity: | 194 | 
| Alignm E-value: | 9.99967e-42 | 
| Alignm gaps (pig, cow): | 71, 94 | 
| Conread position: | 198-567 | 
| Cow position: | chr3:22352638-22353029 (view UCSC Genome Browser custom track) | 
| Alignm length: | 393 | 
| Alignm identity: | 278 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 67, 381 | 
| Conread position: | 200-562 | 
| Cow position: | chr3:46752872-46753257 (view UCSC Genome Browser custom track) | 
| Alignm length: | 387 | 
| Alignm identity: | 283 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 53, 371 | 
| Conread position: | 201-554 | 
| Cow position: | chr3:37487018-37486646 (view UCSC Genome Browser custom track) | 
| Alignm length: | 381 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 64, 116 | 
| Conread position: | 204-427 | 
| Cow position: | chr3:36402851-36403093 (view UCSC Genome Browser custom track) | 
| Alignm length: | 243 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 7e-35 | 
| Alignm gaps (pig, cow): | 53, 0 | 
| Conread position: | 206-562 | 
| Cow position: | chr3:15082905-15082532 (view UCSC Genome Browser custom track) | 
| Alignm length: | 380 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 3e-39 | 
| Alignm gaps (pig, cow): | 58, 111 | 
| Conread position: | 210-499 | 
| Cow position: | chr3:10412283-10412594 (view UCSC Genome Browser custom track) | 
| Alignm length: | 313 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 15, 298 | 
| Conread position: | 214-554 | 
| Cow position: | chr3:26722776-26722408 (view UCSC Genome Browser custom track) | 
| Alignm length: | 369 | 
| Alignm identity: | 272 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 9, 0 | 
| Conread position: | 216-554 | 
| Cow position: | chr3:16657828-16657470 (view UCSC Genome Browser custom track) | 
| Alignm length: | 359 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 61, 0 | 
| Conread position: | 217-562 | 
| Cow position: | chr3:5886926-5887294 (view UCSC Genome Browser custom track) | 
| Alignm length: | 372 | 
| Alignm identity: | 270 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 48, 160 | 
| Conread position: | 217-566 | 
| Cow position: | chr3:26919770-26920133 (view UCSC Genome Browser custom track) | 
| Alignm length: | 366 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 9.99967e-42 | 
| Alignm gaps (pig, cow): | 58, 347 | 
| Conread position: | 221-554 | 
| Cow position: | chr3:42186513-42186872 (view UCSC Genome Browser custom track) | 
| Alignm length: | 361 | 
| Alignm identity: | 266 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 280 | 
| Conread position: | 221-557 | 
| Cow position: | chr3:75997841-75997482 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 269 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 235-554 | 
| Cow position: | chr3:64655278-64655608 (view UCSC Genome Browser custom track) | 
| Alignm length: | 335 | 
| Alignm identity: | 215 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 150, 283 | 
| Conread position: | 238-562 | 
| Cow position: | chr3:8605834-8605503 (view UCSC Genome Browser custom track) | 
| Alignm length: | 338 | 
| Alignm identity: | 245 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 137, 49 | 
| Conread position: | 239-554 | 
| Cow position: | chr3:2117518-2117849 (view UCSC Genome Browser custom track) | 
| Alignm length: | 332 | 
| Alignm identity: | 243 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 151, 0 | 
| Conread position: | 246-562 | 
| Cow position: | chr3:75772056-75771724 (view UCSC Genome Browser custom track) | 
| Alignm length: | 334 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 139, 311 | 
| Conread position: | 250-554 | 
| Cow position: | chr3:60185088-60184764 (view UCSC Genome Browser custom track) | 
| Alignm length: | 327 | 
| Alignm identity: | 244 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 135, 58 | 
| Conread position: | 251-562 | 
| Cow position: | chr3:31050917-31050610 (view UCSC Genome Browser custom track) | 
| Alignm length: | 318 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 3e-39 | 
| Alignm gaps (pig, cow): | 126, 24 | 
| Conread position: | 252-562 | 
| Cow position: | chr3:51235407-51235093 (view UCSC Genome Browser custom track) | 
| Alignm length: | 320 | 
| Alignm identity: | 231 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 42, 7 | 
| Conread position: | 253-441 | 
| Cow position: | chr3:57996644-57996842 (view UCSC Genome Browser custom track) | 
| Alignm length: | 199 | 
| Alignm identity: | 157 | 
| Alignm E-value: | 1e-39 | 
| Alignm gaps (pig, cow): | 132, 0 | 
| Conread position: | 253-524 | 
| Cow position: | chr3:30622959-30623248 (view UCSC Genome Browser custom track) | 
| Alignm length: | 290 | 
| Alignm identity: | 222 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 0 | 
| Conread position: | 253-524 | 
| Cow position: | chr3:64024946-64024657 (view UCSC Genome Browser custom track) | 
| Alignm length: | 290 | 
| Alignm identity: | 223 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 120, 0 | 
| Conread position: | 253-529 | 
| Cow position: | chr3:13248934-13248646 (view UCSC Genome Browser custom track) | 
| Alignm length: | 290 | 
| Alignm identity: | 221 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 132, 286 | 
| Conread position: | 253-540 | 
| Cow position: | chr3:173592-173894 (view UCSC Genome Browser custom track) | 
| Alignm length: | 305 | 
| Alignm identity: | 230 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 120, 31 | 
| Conread position: | 253-554 | 
| Cow position: | chr3:579260-579576 (view UCSC Genome Browser custom track) | 
| Alignm length: | 317 | 
| Alignm identity: | 239 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 132, 0 | 
| Conread position: | 253-554 | 
| Cow position: | chr3:12665223-12665541 (view UCSC Genome Browser custom track) | 
| Alignm length: | 319 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 132, 0 | 
| Conread position: | 253-554 | 
| Cow position: | chr3:34015497-34015815 (view UCSC Genome Browser custom track) | 
| Alignm length: | 319 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 132, 0 | 
| Conread position: | 253-554 | 
| Cow position: | chr3:36416825-36417143 (view UCSC Genome Browser custom track) | 
| Alignm length: | 319 | 
| Alignm identity: | 241 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 132, 0 | 
| Conread position: | 253-562 | 
| Cow position: | chr3:42424408-42424089 (view UCSC Genome Browser custom track) | 
| Alignm length: | 322 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 4.00001e-40 | 
| Alignm gaps (pig, cow): | 116, 66 | 
| Conread position: | 253-562 | 
| Cow position: | chr3:59864568-59864890 (view UCSC Genome Browser custom track) | 
| Alignm length: | 327 | 
| Alignm identity: | 246 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 132, 82 | 
| Conread position: | 254-445 | 
| Cow position: | chr3:51547847-51548047 (view UCSC Genome Browser custom track) | 
| Alignm length: | 202 | 
| Alignm identity: | 156 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 131, 5 | 
| Conread position: | 254-553 | 
| Cow position: | chr3:42500157-42500465 (view UCSC Genome Browser custom track) | 
| Alignm length: | 311 | 
| Alignm identity: | 215 | 
| Alignm E-value: | 9e-38 | 
| Alignm gaps (pig, cow): | 57, 106 | 
| Conread position: | 257-520 | 
| Cow position: | chr3:22272593-22272315 (view UCSC Genome Browser custom track) | 
| Alignm length: | 281 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 4.00001e-41 | 
| Alignm gaps (pig, cow): | 12, 72 | 
| Conread position: | 259-522 | 
| Cow position: | chr3:17059363-17059096 (view UCSC Genome Browser custom track) | 
| Alignm length: | 271 | 
| Alignm identity: | 184 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 16, 52 | 
| Conread position: | 259-554 | 
| Cow position: | chr3:21779686-21779374 (view UCSC Genome Browser custom track) | 
| Alignm length: | 313 | 
| Alignm identity: | 234 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 126, 0 | 
| Conread position: | 261-496 | 
| Cow position: | chr3:30333763-30334007 (view UCSC Genome Browser custom track) | 
| Alignm length: | 251 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 124, 31 | 
| Conread position: | 261-524 | 
| Cow position: | chr3:13117959-13117688 (view UCSC Genome Browser custom track) | 
| Alignm length: | 275 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 124, 60 | 
| Conread position: | 261-553 | 
| Cow position: | chr3:19794998-19794689 (view UCSC Genome Browser custom track) | 
| Alignm length: | 310 | 
| Alignm identity: | 241 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 124, 0 | 
| Conread position: | 261-554 | 
| Cow position: | chr3:34464461-34464769 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 122, 0 | 
| Conread position: | 261-554 | 
| Cow position: | chr3:55461563-55461260 (view UCSC Genome Browser custom track) | 
| Alignm length: | 306 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 116, 228 | 
| Conread position: | 262-519 | 
| Cow position: | chr3:79595730-79596001 (view UCSC Genome Browser custom track) | 
| Alignm length: | 275 | 
| Alignm identity: | 214 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 123, 16 | 
| Conread position: | 262-562 | 
| Cow position: | chr3:68043411-68043094 (view UCSC Genome Browser custom track) | 
| Alignm length: | 319 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 7e-35 | 
| Alignm gaps (pig, cow): | 22, 165 | 
| Conread position: | 263-554 | 
| Cow position: | chr3:35043255-35043563 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 236 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 122, 0 | 
| Conread position: | 265-534 | 
| Cow position: | chr3:58129188-58129475 (view UCSC Genome Browser custom track) | 
| Alignm length: | 288 | 
| Alignm identity: | 192 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 56, 0 | 
| Conread position: | 265-554 | 
| Cow position: | chr3:46682931-46683236 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 234 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 120, 278 | 
| Conread position: | 265-566 | 
| Cow position: | chr3:2852139-2851831 (view UCSC Genome Browser custom track) | 
| Alignm length: | 314 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 1.96182e-44 | 
| Alignm gaps (pig, cow): | 125, 91 | 
| Conread position: | 266-554 | 
| Cow position: | chr3:53787947-53788251 (view UCSC Genome Browser custom track) | 
| Alignm length: | 306 | 
| Alignm identity: | 229 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 119, 292 | 
| Conread position: | 267-540 | 
| Cow position: | chr3:37451200-37451491 (view UCSC Genome Browser custom track) | 
| Alignm length: | 292 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 3e-39 | 
| Alignm gaps (pig, cow): | 113, 0 | 
| Conread position: | 276-566 | 
| Cow position: | chr3:70322564-70322260 (view UCSC Genome Browser custom track) | 
| Alignm length: | 306 | 
| Alignm identity: | 220 | 
| Alignm E-value: | 1.99965e-42 | 
| Alignm gaps (pig, cow): | 82, 295 | 
| Conread position: | 277-592 | 
| Cow position: | chr3:64282207-64281876 (view UCSC Genome Browser custom track) | 
| Alignm length: | 333 | 
| Alignm identity: | 234 | 
| Alignm E-value: | 4.00001e-41 | 
| Alignm gaps (pig, cow): | 7, 89 | 
| Conread position: | 279-554 | 
| Cow position: | chr3:41207454-41207162 (view UCSC Genome Browser custom track) | 
| Alignm length: | 293 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 106, 0 | 
| Conread position: | 283-566 | 
| Cow position: | chr3:35056097-35056392 (view UCSC Genome Browser custom track) | 
| Alignm length: | 301 | 
| Alignm identity: | 241 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 96, 52 | 
| Conread position: | 284-562 | 
| Cow position: | chr3:77366567-77366296 (view UCSC Genome Browser custom track) | 
| Alignm length: | 286 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 166, 53 | 
| Conread position: | 285-554 | 
| Cow position: | chr3:26891608-26891894 (view UCSC Genome Browser custom track) | 
| Alignm length: | 287 | 
| Alignm identity: | 218 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 0 | 
| Conread position: | 285-569 | 
| Cow position: | chr3:26660842-26660548 (view UCSC Genome Browser custom track) | 
| Alignm length: | 297 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 72, 129 | 
| Conread position: | 286-432 | 
| Cow position: | chr3:45698546-45698686 (view UCSC Genome Browser custom track) | 
| Alignm length: | 147 | 
| Alignm identity: | 113 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 94, 0 | 
| Conread position: | 289-451 | 
| Cow position: | chr3:70336552-70336396 (view UCSC Genome Browser custom track) | 
| Alignm length: | 163 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 45, 0 | 
| Conread position: | 289-554 | 
| Cow position: | chr3:65536236-65536518 (view UCSC Genome Browser custom track) | 
| Alignm length: | 283 | 
| Alignm identity: | 208 | 
| Alignm E-value: | 6.02558e-44 | 
| Alignm gaps (pig, cow): | 96, 0 | 
| Conread position: | 289-554 | 
| Cow position: | chr3:69271723-69272005 (view UCSC Genome Browser custom track) | 
| Alignm length: | 283 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 96, 0 | 
| Conread position: | 292-562 | 
| Cow position: | chr3:7677618-7677901 (view UCSC Genome Browser custom track) | 
| Alignm length: | 286 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 1e-38 | 
| Alignm gaps (pig, cow): | 86, 32 | 
| Conread position: | 292-562 | 
| Cow position: | chr3:52651816-52651544 (view UCSC Genome Browser custom track) | 
| Alignm length: | 278 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 149, 86 | 
| Conread position: | 292-563 | 
| Cow position: | chr3:37599861-37600142 (view UCSC Genome Browser custom track) | 
| Alignm length: | 285 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 44 | 
| Conread position: | 292-564 | 
| Cow position: | chr3:33633894-33633628 (view UCSC Genome Browser custom track) | 
| Alignm length: | 276 | 
| Alignm identity: | 194 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 155, 74 | 
| Conread position: | 292-566 | 
| Cow position: | chr3:66977794-66978074 (view UCSC Genome Browser custom track) | 
| Alignm length: | 291 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 7e-36 | 
| Alignm gaps (pig, cow): | 93, 32 | 
| Conread position: | 294-553 | 
| Cow position: | chr3:17460351-17460619 (view UCSC Genome Browser custom track) | 
| Alignm length: | 272 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 5.00264e-43 | 
| Alignm gaps (pig, cow): | 74, 29 | 
| Conread position: | 295-555 | 
| Cow position: | chr3:15988067-15988344 (view UCSC Genome Browser custom track) | 
| Alignm length: | 278 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 7e-35 | 
| Alignm gaps (pig, cow): | 83, 0 | 
| Conread position: | 295-562 | 
| Cow position: | chr3:22235371-22235088 (view UCSC Genome Browser custom track) | 
| Alignm length: | 288 | 
| Alignm identity: | 214 | 
| Alignm E-value: | 4.99983e-42 | 
| Alignm gaps (pig, cow): | 43, 24 | 
| Conread position: | 295-562 | 
| Cow position: | chr3:33254731-33254452 (view UCSC Genome Browser custom track) | 
| Alignm length: | 285 | 
| Alignm identity: | 228 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 83, 17 | 
| Conread position: | 297-521 | 
| Cow position: | chr3:4017636-4017872 (view UCSC Genome Browser custom track) | 
| Alignm length: | 238 | 
| Alignm identity: | 170 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 89, 40 | 
| Conread position: | 298-554 | 
| Cow position: | chr3:70215302-70215575 (view UCSC Genome Browser custom track) | 
| Alignm length: | 274 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 87, 0 | 
| Conread position: | 301-554 | 
| Cow position: | chr3:14028119-14028389 (view UCSC Genome Browser custom track) | 
| Alignm length: | 271 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 6.02558e-44 | 
| Alignm gaps (pig, cow): | 84, 0 | 
| Conread position: | 301-562 | 
| Cow position: | chr3:14922786-14923063 (view UCSC Genome Browser custom track) | 
| Alignm length: | 279 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 4.00001e-40 | 
| Alignm gaps (pig, cow): | 84, 257 | 
| Conread position: | 302-540 | 
| Cow position: | chr3:46006239-46006482 (view UCSC Genome Browser custom track) | 
| Alignm length: | 246 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 116, 10 | 
| Conread position: | 304-563 | 
| Cow position: | chr3:24432518-24432794 (view UCSC Genome Browser custom track) | 
| Alignm length: | 277 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 1.99965e-42 | 
| Alignm gaps (pig, cow): | 81, 0 | 
| Conread position: | 305-563 | 
| Cow position: | chr3:29391984-29391709 (view UCSC Genome Browser custom track) | 
| Alignm length: | 276 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 5.00264e-43 | 
| Alignm gaps (pig, cow): | 41, 0 | 
| Conread position: | 307-569 | 
| Cow position: | chr3:58766283-58766562 (view UCSC Genome Browser custom track) | 
| Alignm length: | 280 | 
| Alignm identity: | 192 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 71, 0 | 
| Conread position: | 308-554 | 
| Cow position: | chr3:28471494-28471753 (view UCSC Genome Browser custom track) | 
| Alignm length: | 264 | 
| Alignm identity: | 193 | 
| Alignm E-value: | 7e-36 | 
| Alignm gaps (pig, cow): | 77, 211 | 
| Conread position: | 308-562 | 
| Cow position: | chr3:25753395-25753663 (view UCSC Genome Browser custom track) | 
| Alignm length: | 270 | 
| Alignm identity: | 199 | 
| Alignm E-value: | 4.00001e-41 | 
| Alignm gaps (pig, cow): | 70, 266 | 
| Conread position: | 308-569 | 
| Cow position: | chr3:14724260-14724532 (view UCSC Genome Browser custom track) | 
| Alignm length: | 275 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 6.02558e-44 | 
| Alignm gaps (pig, cow): | 72, 126 | 
| Conread position: | 311-554 | 
| Cow position: | chr3:1299241-1299481 (view UCSC Genome Browser custom track) | 
| Alignm length: | 250 | 
| Alignm identity: | 175 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 136, 64 | 
| Conread position: | 311-554 | 
| Cow position: | chr3:39921801-39921542 (view UCSC Genome Browser custom track) | 
| Alignm length: | 261 | 
| Alignm identity: | 193 | 
| Alignm E-value: | 3e-39 | 
| Alignm gaps (pig, cow): | 75, 53 | 
| Conread position: | 317-554 | 
| Cow position: | chr3:40205553-40205806 (view UCSC Genome Browser custom track) | 
| Alignm length: | 255 | 
| Alignm identity: | 190 | 
| Alignm E-value: | 1e-38 | 
| Alignm gaps (pig, cow): | 66, 246 | 
| Conread position: | 318-566 | 
| Cow position: | chr3:22220293-22220554 (view UCSC Genome Browser custom track) | 
| Alignm length: | 266 | 
| Alignm identity: | 192 | 
| Alignm E-value: | 5e-32 | 
| Alignm gaps (pig, cow): | 67, 18 | 
| Conread position: | 324-562 | 
| Cow position: | chr3:60932426-60932676 (view UCSC Genome Browser custom track) | 
| Alignm length: | 255 | 
| Alignm identity: | 193 | 
| Alignm E-value: | 1e-39 | 
| Alignm gaps (pig, cow): | 59, 12 | 
| Conread position: | 324-563 | 
| Cow position: | chr3:14613189-14613439 (view UCSC Genome Browser custom track) | 
| Alignm length: | 252 | 
| Alignm identity: | 186 | 
| Alignm E-value: | 3e-39 | 
| Alignm gaps (pig, cow): | 61, 244 | 
| Conread position: | 324-569 | 
| Cow position: | chr3:68500616-68500879 (view UCSC Genome Browser custom track) | 
| Alignm length: | 264 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 61, 0 | 
| Conread position: | 325-538 | 
| Cow position: | chr3:77472826-77472602 (view UCSC Genome Browser custom track) | 
| Alignm length: | 231 | 
| Alignm identity: | 168 | 
| Alignm E-value: | 8e-26 | 
| Alignm gaps (pig, cow): | 58, 24 | 
| Conread position: | 327-554 | 
| Cow position: | chr3:59118619-59118375 (view UCSC Genome Browser custom track) | 
| Alignm length: | 245 | 
| Alignm identity: | 175 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 58, 0 | 
| Conread position: | 327-562 | 
| Cow position: | chr3:76136478-76136732 (view UCSC Genome Browser custom track) | 
| Alignm length: | 256 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 2.00386e-43 | 
| Alignm gaps (pig, cow): | 58, 242 | 
| Conread position: | 328-554 | 
| Cow position: | chr3:16620595-16620352 (view UCSC Genome Browser custom track) | 
| Alignm length: | 244 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 57, 0 | 
| Conread position: | 330-554 | 
| Cow position: | chr3:12931929-12932170 (view UCSC Genome Browser custom track) | 
| Alignm length: | 242 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 55, 0 | 
| Conread position: | 341-554 | 
| Cow position: | chr3:28765238-28765008 (view UCSC Genome Browser custom track) | 
| Alignm length: | 231 | 
| Alignm identity: | 161 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 44, 0 | 
| Conread position: | 341-554 | 
| Cow position: | chr3:39231885-39232115 (view UCSC Genome Browser custom track) | 
| Alignm length: | 231 | 
| Alignm identity: | 166 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 44, 0 | 
| Conread position: | 344-554 | 
| Cow position: | chr3:6024682-6024455 (view UCSC Genome Browser custom track) | 
| Alignm length: | 228 | 
| Alignm identity: | 166 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 41, 0 | 
| Conread position: | 344-557 | 
| Cow position: | chr3:73763454-73763224 (view UCSC Genome Browser custom track) | 
| Alignm length: | 231 | 
| Alignm identity: | 167 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 36, 0 | 
| Conread position: | 345-569 | 
| Cow position: | chr3:49976349-49976106 (view UCSC Genome Browser custom track) | 
| Alignm length: | 245 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 7e-25 | 
| Alignm gaps (pig, cow): | 40, 186 | 
| Conread position: | 364-554 | 
| Cow position: | chr3:52045813-52045616 (view UCSC Genome Browser custom track) | 
| Alignm length: | 198 | 
| Alignm identity: | 140 | 
| Alignm E-value: | 7e-25 | 
| Alignm gaps (pig, cow): | 79, 0 | 
| Conread position: | 378-555 | 
| Cow position: | chr3:64293745-64293925 (view UCSC Genome Browser custom track) | 
| Alignm length: | 181 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 9, 0 | 
| Conread position: | 378-566 | 
| Cow position: | chr3:39878958-39878764 (view UCSC Genome Browser custom track) | 
| Alignm length: | 197 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 72, 185 | 
| Conread position: | 384-567 | 
| Cow position: | chr3:11411822-11411633 (view UCSC Genome Browser custom track) | 
| Alignm length: | 191 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 58, 170 | 
| Conread position: | 386-540 | 
| Cow position: | chr3:13291334-13291494 (view UCSC Genome Browser custom track) | 
| Alignm length: | 161 | 
| Alignm identity: | 117 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 63, 0 | 
| Conread position: | 386-540 | 
| Cow position: | chr3:30329440-30329279 (view UCSC Genome Browser custom track) | 
| Alignm length: | 162 | 
| Alignm identity: | 122 | 
| Alignm E-value: | 7e-25 | 
| Alignm gaps (pig, cow): | 57, 0 | 
| Conread position: | 386-540 | 
| Cow position: | chr3:53525797-53525645 (view UCSC Genome Browser custom track) | 
| Alignm length: | 155 | 
| Alignm identity: | 116 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 79, 0 | 
| Conread position: | 386-550 | 
| Cow position: | chr3:59607521-59607691 (view UCSC Genome Browser custom track) | 
| Alignm length: | 171 | 
| Alignm identity: | 122 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 56, 0 | 
| Conread position: | 386-554 | 
| Cow position: | chr3:2507412-2507238 (view UCSC Genome Browser custom track) | 
| Alignm length: | 175 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 64, 0 | 
| Conread position: | 386-554 | 
| Cow position: | chr3:4135753-4135578 (view UCSC Genome Browser custom track) | 
| Alignm length: | 176 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 4e-29 | 
| Alignm gaps (pig, cow): | 63, 0 | 
| Conread position: | 386-554 | 
| Cow position: | chr3:6170700-6170875 (view UCSC Genome Browser custom track) | 
| Alignm length: | 176 | 
| Alignm identity: | 130 | 
| Alignm E-value: | 3e-26 | 
| Alignm gaps (pig, cow): | 56, 0 | 
| Conread position: | 386-554 | 
| Cow position: | chr3:13360676-13360851 (view UCSC Genome Browser custom track) | 
| Alignm length: | 176 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 63, 0 | 
| Conread position: | 386-554 | 
| Cow position: | chr3:19958823-19958998 (view UCSC Genome Browser custom track) | 
| Alignm length: | 176 | 
| Alignm identity: | 128 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 63, 0 | 
| Conread position: | 386-554 | 
| Cow position: | chr3:20074316-20074491 (view UCSC Genome Browser custom track) | 
| Alignm length: | 176 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 9e-27 | 
| Alignm gaps (pig, cow): | 57, 0 | 
| Conread position: | 386-554 | 
| Cow position: | chr3:26974410-26974236 (view UCSC Genome Browser custom track) | 
| Alignm length: | 175 | 
| Alignm identity: | 124 | 
| Alignm E-value: | 5e-21 | 
| Alignm gaps (pig, cow): | 59, 0 | 
| Conread position: | 386-554 | 
| Cow position: | chr3:27547207-27547035 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 55, 145 | 
| Conread position: | 386-554 | 
| Cow position: | chr3:30752812-30752987 (view UCSC Genome Browser custom track) | 
| Alignm length: | 176 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 9e-27 | 
| Alignm gaps (pig, cow): | 57, 0 | 
| Conread position: | 386-554 | 
| Cow position: | chr3:36594927-36595102 (view UCSC Genome Browser custom track) | 
| Alignm length: | 176 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 63, 0 | 
| Conread position: | 386-554 | 
| Cow position: | chr3:37040517-37040694 (view UCSC Genome Browser custom track) | 
| Alignm length: | 178 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 6e-23 | 
| Alignm gaps (pig, cow): | 27, 0 | 
| Conread position: | 386-554 | 
| Cow position: | chr3:50217220-50217395 (view UCSC Genome Browser custom track) | 
| Alignm length: | 176 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 7e-25 | 
| Alignm gaps (pig, cow): | 57, 0 | 
| Conread position: | 386-554 | 
| Cow position: | chr3:58336535-58336710 (view UCSC Genome Browser custom track) | 
| Alignm length: | 176 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 61, 0 | 
| Conread position: | 386-554 | 
| Cow position: | chr3:65178600-65178774 (view UCSC Genome Browser custom track) | 
| Alignm length: | 175 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 4e-29 | 
| Alignm gaps (pig, cow): | 63, 0 | 
| Conread position: | 386-554 | 
| Cow position: | chr3:71245824-71245999 (view UCSC Genome Browser custom track) | 
| Alignm length: | 176 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 64, 0 | 
| Conread position: | 386-555 | 
| Cow position: | chr3:54876892-54877064 (view UCSC Genome Browser custom track) | 
| Alignm length: | 177 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 9e-27 | 
| Alignm gaps (pig, cow): | 64, 114 | 
| Conread position: | 386-562 | 
| Cow position: | chr3:18184143-18184322 (view UCSC Genome Browser custom track) | 
| Alignm length: | 181 | 
| Alignm identity: | 134 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 64, 174 | 
| Conread position: | 386-562 | 
| Cow position: | chr3:29281988-29282170 (view UCSC Genome Browser custom track) | 
| Alignm length: | 184 | 
| Alignm identity: | 134 | 
| Alignm E-value: | 8e-26 | 
| Alignm gaps (pig, cow): | 64, 177 | 
| Conread position: | 386-563 | 
| Cow position: | chr3:16156752-16156933 (view UCSC Genome Browser custom track) | 
| Alignm length: | 184 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 6e-34 | 
| Alignm gaps (pig, cow): | 64, 154 | 
| Conread position: | 386-569 | 
| Cow position: | chr3:22918751-22918940 (view UCSC Genome Browser custom track) | 
| Alignm length: | 191 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 7e-36 | 
| Alignm gaps (pig, cow): | 64, 177 | 
| Conread position: | 386-569 | 
| Cow position: | chr3:51256166-51256361 (view UCSC Genome Browser custom track) | 
| Alignm length: | 196 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 8e-26 | 
| Alignm gaps (pig, cow): | 64, 0 | 
| Conread position: | 387-562 | 
| Cow position: | chr3:28675052-28675227 (view UCSC Genome Browser custom track) | 
| Alignm length: | 177 | 
| Alignm identity: | 124 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 167, 47 | 
| Conread position: | 387-575 | 
| Cow position: | chr3:1831627-1831435 (view UCSC Genome Browser custom track) | 
| Alignm length: | 195 | 
| Alignm identity: | 140 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 62, 92 | 
| Conread position: | 388-562 | 
| Cow position: | chr3:14452891-14453069 (view UCSC Genome Browser custom track) | 
| Alignm length: | 181 | 
| Alignm identity: | 134 | 
| Alignm E-value: | 3e-26 | 
| Alignm gaps (pig, cow): | 61, 46 | 
| Conread position: | 388-563 | 
| Cow position: | chr3:46349456-46349637 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 62, 50 | 
| Conread position: | 388-569 | 
| Cow position: | chr3:18460464-18460279 (view UCSC Genome Browser custom track) | 
| Alignm length: | 189 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 4e-29 | 
| Alignm gaps (pig, cow): | 44, 125 | 
| Conread position: | 393-551 | 
| Cow position: | chr3:11018688-11018845 (view UCSC Genome Browser custom track) | 
| Alignm length: | 159 | 
| Alignm identity: | 125 | 
| Alignm E-value: | 5e-33 | 
| Alignm gaps (pig, cow): | 50, 0 | 
| Conread position: | 396-554 | 
| Cow position: | chr3:6884383-6884549 (view UCSC Genome Browser custom track) | 
| Alignm length: | 167 | 
| Alignm identity: | 121 | 
| Alignm E-value: | 5e-21 | 
| Alignm gaps (pig, cow): | 53, 0 | 
| Conread position: | 396-562 | 
| Cow position: | chr3:21100042-21100214 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 130 | 
| Alignm E-value: | 3e-26 | 
| Alignm gaps (pig, cow): | 53, 170 | 
| Conread position: | 396-566 | 
| Cow position: | chr3:81375013-81374837 (view UCSC Genome Browser custom track) | 
| Alignm length: | 178 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 53, 170 | 
| Conread position: | 411-553 | 
| Cow position: | chr3:61278004-61278150 (view UCSC Genome Browser custom track) | 
| Alignm length: | 147 | 
| Alignm identity: | 111 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 36, 0 | 
Show alignments to all cow chromosomes.
