Cow genome map

Conread name: rpigcb_7632.y1

Conread position: 18-554
Cow position: chr3:72175465-72174902 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 116

Conread position: 50-447
Cow position: chr3:32412618-32412196 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 5

Conread position: 54-550
Cow position: chr3:67545719-67545240 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 19

Conread position: 56-525
Cow position: chr3:22724894-22724396 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 16

Conread position: 56-529
Cow position: chr3:76187409-76187917 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 16

Conread position: 59-562
Cow position: chr3:56148172-56148706 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 40

Conread position: 59-562
Cow position: chr3:72632952-72633483 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 13

Conread position: 60-520
Cow position: chr3:19947103-19947569 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 12

Conread position: 60-524
Cow position: chr3:24573280-24572797 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 12

Conread position: 60-553
Cow position: chr3:49611327-49610808 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 12

Conread position: 60-557
Cow position: chr3:14284615-14285136 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 12

Conread position: 60-562
Cow position: chr3:58950342-58950869 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 12

Conread position: 60-566
Cow position: chr3:2904556-2904042 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 12

Conread position: 60-566
Cow position: chr3:24455635-24455123 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 12

Conread position: 60-566
Cow position: chr3:45977383-45977914 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 12

Conread position: 60-566
Cow position: chr3:69930953-69930422 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 12

Conread position: 60-569
Cow position: chr3:23010253-23010774 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 12

Conread position: 61-427
Cow position: chr3:6713889-6714278 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 11

Conread position: 61-441
Cow position: chr3:22338790-22339190 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 11

Conread position: 61-441
Cow position: chr3:37280277-37280679 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-448
Cow position: chr3:19798270-19797862 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-451
Cow position: chr3:40285434-40285025 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-475
Cow position: chr3:63239132-63238711 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 11

Conread position: 61-477
Cow position: chr3:31121261-31120810 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 11

Conread position: 61-501
Cow position: chr3:21004697-21005167 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 11

Conread position: 61-501
Cow position: chr3:43084124-43084590 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-510
Cow position: chr3:66736683-66736213 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 11

Conread position: 61-517
Cow position: chr3:68510454-68509972 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-522
Cow position: chr3:2790633-2791119 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 11

Conread position: 61-524
Cow position: chr3:1739991-1739499 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-524
Cow position: chr3:49463671-49463177 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 11

Conread position: 61-524
Cow position: chr3:66830057-66829572 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 11

Conread position: 61-524
Cow position: chr3:68697083-68696592 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-525
Cow position: chr3:54087489-54087001 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-532
Cow position: chr3:24351593-24352068 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 7

Conread position: 61-532
Cow position: chr3:30321131-30321638 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 11

Conread position: 61-540
Cow position: chr3:2572409-2572917 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-540
Cow position: chr3:29574244-29573738 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-540
Cow position: chr3:32490831-32490323 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-540
Cow position: chr3:33269120-33269613 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 11

Conread position: 61-540
Cow position: chr3:42977702-42977203 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-540
Cow position: chr3:45311674-45312168 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 11

Conread position: 61-540
Cow position: chr3:47272998-47272489 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 11

Conread position: 61-540
Cow position: chr3:66968997-66968490 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 11

Conread position: 61-551
Cow position: chr3:15663555-15663048 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 15

Conread position: 61-552
Cow position: chr3:33326263-33326791 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 0

Conread position: 61-552
Cow position: chr3:35885232-35884719 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 11

Conread position: 61-552
Cow position: chr3:70914383-70913867 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 465

Conread position: 61-553
Cow position: chr3:19883352-19883861 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-553
Cow position: chr3:46505650-46506171 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr3:823209-822686 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr3:2866773-2866251 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 11

Conread position: 61-554
Cow position: chr3:5474420-5474943 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 11

Conread position: 61-554
Cow position: chr3:6528874-6529396 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr3:6837911-6838433 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr3:7246222-7245702 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr3:12798169-12797658 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr3:13723831-13723308 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr3:14679969-14680491 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr3:16225759-16226278 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr3:16294028-16293513 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 11

Conread position: 61-554
Cow position: chr3:18862323-18862844 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr3:20795175-20795697 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr3:21593166-21593686 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 11

Conread position: 61-554
Cow position: chr3:26993008-26993528 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 11

Conread position: 61-554
Cow position: chr3:27866540-27867065 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr3:28435817-28435295 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr3:30616055-30615537 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 11

Conread position: 61-554
Cow position: chr3:31021564-31022083 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 11

Conread position: 61-554
Cow position: chr3:34504241-34503732 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr3:35612036-35612551 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr3:37893715-37894235 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr3:40521058-40520536 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 11

Conread position: 61-554
Cow position: chr3:43525857-43525336 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr3:46224777-46225283 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 11

Conread position: 61-554
Cow position: chr3:46858401-46857880 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr3:47078732-47078209 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr3:49605557-49605039 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 11

Conread position: 61-554
Cow position: chr3:49908141-49907629 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 11

Conread position: 61-554
Cow position: chr3:52150404-52149882 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr3:56297266-56297788 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 11

Conread position: 61-554
Cow position: chr3:66888314-66887794 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr3:68717827-68717307 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr3:68870868-68870347 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 11

Conread position: 61-554
Cow position: chr3:68889690-68889169 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr3:73636763-73637283 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr3:76864313-76864835 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-554
Cow position: chr3:83767135-83767649 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 11

Conread position: 61-555
Cow position: chr3:24265084-24265603 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-555
Cow position: chr3:40826279-40826801 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-555
Cow position: chr3:50346701-50347212 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 11

Conread position: 61-555
Cow position: chr3:57455845-57456349 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-555
Cow position: chr3:75038960-75038437 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-556
Cow position: chr3:24586347-24585826 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-558
Cow position: chr3:6864549-6865066 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-560
Cow position: chr3:64376827-64376307 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-562
Cow position: chr3:596999-597518 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 11

Conread position: 61-562
Cow position: chr3:6688695-6689240 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 11

Conread position: 61-562
Cow position: chr3:7477039-7476509 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 11

Conread position: 61-562
Cow position: chr3:10243543-10244070 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 11

Conread position: 61-562
Cow position: chr3:18353480-18352956 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 11

Conread position: 61-562
Cow position: chr3:18814388-18814916 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-562
Cow position: chr3:19753846-19753324 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 239

Conread position: 61-562
Cow position: chr3:21179377-21178846 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-562
Cow position: chr3:23204791-23204266 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 11

Conread position: 61-562
Cow position: chr3:23287453-23286926 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-562
Cow position: chr3:29129978-29130503 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 15

Conread position: 61-562
Cow position: chr3:36875185-36874650 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 11

Conread position: 61-562
Cow position: chr3:38095781-38096311 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 11

Conread position: 61-562
Cow position: chr3:40048771-40049299 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-562
Cow position: chr3:42846235-42846754 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 11

Conread position: 61-562
Cow position: chr3:48603133-48603672 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-562
Cow position: chr3:55373972-55374486 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 11

Conread position: 61-562
Cow position: chr3:61677420-61677947 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-562
Cow position: chr3:63736271-63736802 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-562
Cow position: chr3:64653551-64654079 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-562
Cow position: chr3:65988805-65989320 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 11

Conread position: 61-562
Cow position: chr3:72669680-72669149 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 11

Conread position: 61-562
Cow position: chr3:78024548-78024029 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-562
Cow position: chr3:81100962-81101489 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 11

Conread position: 61-563
Cow position: chr3:24443212-24442690 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-563
Cow position: chr3:43190388-43189860 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 11

Conread position: 61-566
Cow position: chr3:7856307-7856836 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 11

Conread position: 61-566
Cow position: chr3:18886347-18886872 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 11

Conread position: 61-566
Cow position: chr3:19941773-19942297 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 11

Conread position: 61-569
Cow position: chr3:2834657-2834117 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 61-569
Cow position: chr3:37627777-37628304 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 11

Conread position: 61-569
Cow position: chr3:63202130-63202656 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 27

Conread position: 61-585
Cow position: chr3:35342532-35343085 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 62-540
Cow position: chr3:49134654-49134147 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 10

Conread position: 62-545
Cow position: chr3:27245805-27245298 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 14

Conread position: 62-554
Cow position: chr3:40337260-40336742 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 10

Conread position: 62-554
Cow position: chr3:49563894-49564420 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 10

Conread position: 63-532
Cow position: chr3:63148754-63148259 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 9

Conread position: 63-552
Cow position: chr3:19108446-19108959 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 115

Conread position: 63-554
Cow position: chr3:4030637-4031145 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 117

Conread position: 63-554
Cow position: chr3:19880933-19881453 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 14

Conread position: 63-554
Cow position: chr3:53880383-53879863 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 9

Conread position: 63-554
Cow position: chr3:65473314-65473830 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 9

Conread position: 63-555
Cow position: chr3:3837703-3837202 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 132

Conread position: 63-563
Cow position: chr3:74060356-74060885 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 10

Conread position: 63-566
Cow position: chr3:5951732-5951209 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 13

Conread position: 63-566
Cow position: chr3:64875669-64876187 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 9

Conread position: 63-569
Cow position: chr3:3552208-3552737 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 9

Conread position: 63-569
Cow position: chr3:20379835-20379296 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 63-570
Cow position: chr3:56645448-56644911 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 523

Conread position: 63-592
Cow position: chr3:50920918-50921485 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 378

Conread position: 64-540
Cow position: chr3:45185099-45184598 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 305

Conread position: 65-553
Cow position: chr3:26742987-26742470 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 7

Conread position: 66-554
Cow position: chr3:56102635-56103143 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 6

Conread position: 72-439
Cow position: chr3:34027983-34027593 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 0

Conread position: 72-452
Cow position: chr3:44100940-44101347 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 6

Conread position: 72-476
Cow position: chr3:18759530-18759100 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 0

Conread position: 72-520
Cow position: chr3:63688998-63688542 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 167

Conread position: 72-525
Cow position: chr3:31418427-31418909 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 11

Conread position: 72-552
Cow position: chr3:32220616-32221112 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 322

Conread position: 72-552
Cow position: chr3:38869465-38869968 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 280

Conread position: 72-553
Cow position: chr3:58034745-58034264 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 367

Conread position: 72-554
Cow position: chr3:7155915-7155403 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 0

Conread position: 72-557
Cow position: chr3:26566676-26567182 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 40

Conread position: 72-561
Cow position: chr3:54654285-54653763 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 104

Conread position: 72-562
Cow position: chr3:57742408-57742922 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 161

Conread position: 73-551
Cow position: chr3:56101162-56101652 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 167

Conread position: 73-553
Cow position: chr3:11384209-11384715 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 263

Conread position: 74-554
Cow position: chr3:2074682-2075184 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 44

Conread position: 74-554
Cow position: chr3:50204468-50204968 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 7

Conread position: 75-523
Cow position: chr3:74848270-74847808 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 322

Conread position: 75-554
Cow position: chr3:13035601-13035092 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 0

Conread position: 75-566
Cow position: chr3:13312111-13311587 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 518

Conread position: 76-478
Cow position: chr3:39856359-39856783 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 412

Conread position: 76-554
Cow position: chr3:11417442-11417950 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 0

Conread position: 79-532
Cow position: chr3:60178201-60177722 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 53

Conread position: 79-562
Cow position: chr3:31934438-31933927 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 226

Conread position: 81-444
Cow position: chr3:523020-523376 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 260
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 73, 119

Conread position: 81-553
Cow position: chr3:23170292-23169823 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 90

Conread position: 85-563
Cow position: chr3:78519952-78520464 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 92-562
Cow position: chr3:84198706-84199183 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 41

Conread position: 97-448
Cow position: chr3:2366637-2366275 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 129
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 203, 0

Conread position: 97-540
Cow position: chr3:68273757-68274230 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 0

Conread position: 97-562
Cow position: chr3:48272696-48273189 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 488

Conread position: 97-577
Cow position: chr3:53047876-53047368 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 39

Conread position: 100-456
Cow position: chr3:33692126-33691750 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 70

Conread position: 105-456
Cow position: chr3:34116439-34116073 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 52

Conread position: 106-554
Cow position: chr3:20475439-20475911 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 109-554
Cow position: chr3:41019385-41018907 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 109-562
Cow position: chr3:77726389-77726848 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 236

Conread position: 116-554
Cow position: chr3:65084870-65085337 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 331

Conread position: 122-554
Cow position: chr3:47986383-47986843 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 65

Conread position: 127-557
Cow position: chr3:25056636-25057087 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 226

Conread position: 127-566
Cow position: chr3:36671674-36671203 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 462

Conread position: 130-426
Cow position: chr3:46899728-46900039 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 226
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 24, 201

Conread position: 130-553
Cow position: chr3:27454983-27454534 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 131-554
Cow position: chr3:35918515-35918962 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 434

Conread position: 131-554
Cow position: chr3:36121126-36121579 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 131-554
Cow position: chr3:49930786-49931239 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 131-566
Cow position: chr3:6442020-6442483 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 46

Conread position: 136-554
Cow position: chr3:49732839-49732396 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 164

Conread position: 136-562
Cow position: chr3:12676685-12676229 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 234

Conread position: 139-554
Cow position: chr3:42508250-42507810 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 303

Conread position: 139-562
Cow position: chr3:31396333-31396778 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 103

Conread position: 140-569
Cow position: chr3:6785279-6785735 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 0

Conread position: 142-562
Cow position: chr3:19215878-19216311 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 245

Conread position: 142-567
Cow position: chr3:21000127-20999656 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 454

Conread position: 146-553
Cow position: chr3:12667675-12668103 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 19

Conread position: 146-569
Cow position: chr3:23497789-23497340 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 439

Conread position: 147-567
Cow position: chr3:4039961-4039514 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 27

Conread position: 148-553
Cow position: chr3:7773029-7772632 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 49

Conread position: 148-554
Cow position: chr3:14212361-14212794 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 0

Conread position: 148-566
Cow position: chr3:35619528-35619967 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 211

Conread position: 155-562
Cow position: chr3:30351253-30351686 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 412

Conread position: 155-566
Cow position: chr3:14863862-14864297 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 191

Conread position: 158-554
Cow position: chr3:35109207-35109630 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 0

Conread position: 162-549
Cow position: chr3:12673383-12672980 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 16

Conread position: 162-563
Cow position: chr3:33125270-33124842 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 0

Conread position: 163-477
Cow position: chr3:4191951-4191610 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 0

Conread position: 163-495
Cow position: chr3:69962868-69962501 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 88

Conread position: 163-555
Cow position: chr3:19718273-19717864 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 197

Conread position: 167-562
Cow position: chr3:18575618-18575215 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 277
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 55, 99

Conread position: 170-507
Cow position: chr3:2432660-2432298 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 0

Conread position: 170-562
Cow position: chr3:73451321-73450903 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 413

Conread position: 170-569
Cow position: chr3:53646313-53645916 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 258
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 145, 55

Conread position: 171-554
Cow position: chr3:55245537-55245947 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 0

Conread position: 177-524
Cow position: chr3:3300635-3301015 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 177-553
Cow position: chr3:8391384-8391758 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 67

Conread position: 177-566
Cow position: chr3:54863621-54863206 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 39

Conread position: 178-487
Cow position: chr3:2627184-2627500 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 102

Conread position: 178-554
Cow position: chr3:45675777-45675374 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 0

Conread position: 178-554
Cow position: chr3:79668108-79668514 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 0

Conread position: 178-562
Cow position: chr3:37983364-37982955 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 55

Conread position: 179-566
Cow position: chr3:59602803-59603216 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 404

Conread position: 180-552
Cow position: chr3:56160814-56160423 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 151

Conread position: 180-562
Cow position: chr3:49387655-49388060 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 151

Conread position: 187-557
Cow position: chr3:62794067-62793675 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 188-562
Cow position: chr3:52257504-52257114 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 0

Conread position: 191-562
Cow position: chr3:49416834-49416436 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 393

Conread position: 191-566
Cow position: chr3:40004465-40004095 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 135

Conread position: 193-562
Cow position: chr3:14438969-14438577 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 139

Conread position: 194-435
Cow position: chr3:36571158-36571415 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 194
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 71, 94

Conread position: 198-567
Cow position: chr3:22352638-22353029 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 381

Conread position: 200-562
Cow position: chr3:46752872-46753257 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 371

Conread position: 201-554
Cow position: chr3:37487018-37486646 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 260
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 64, 116

Conread position: 204-427
Cow position: chr3:36402851-36403093 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 180
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 53, 0

Conread position: 206-562
Cow position: chr3:15082905-15082532 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 262
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 58, 111

Conread position: 210-499
Cow position: chr3:10412283-10412594 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 213
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 15, 298

Conread position: 214-554
Cow position: chr3:26722776-26722408 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 216-554
Cow position: chr3:16657828-16657470 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 252
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 61, 0

Conread position: 217-562
Cow position: chr3:5886926-5887294 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 160

Conread position: 217-566
Cow position: chr3:26919770-26920133 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 250
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 58, 347

Conread position: 221-554
Cow position: chr3:42186513-42186872 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 280

Conread position: 221-557
Cow position: chr3:75997841-75997482 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 235-554
Cow position: chr3:64655278-64655608 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 283

Conread position: 238-562
Cow position: chr3:8605834-8605503 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 49

Conread position: 239-554
Cow position: chr3:2117518-2117849 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 0

Conread position: 246-562
Cow position: chr3:75772056-75771724 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 311

Conread position: 250-554
Cow position: chr3:60185088-60184764 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 58

Conread position: 251-562
Cow position: chr3:31050917-31050610 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 224
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 126, 24

Conread position: 252-562
Cow position: chr3:51235407-51235093 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 7

Conread position: 253-441
Cow position: chr3:57996644-57996842 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 157
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 132, 0

Conread position: 253-524
Cow position: chr3:30622959-30623248 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 0

Conread position: 253-524
Cow position: chr3:64024946-64024657 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 0

Conread position: 253-529
Cow position: chr3:13248934-13248646 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 286

Conread position: 253-540
Cow position: chr3:173592-173894 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 31

Conread position: 253-554
Cow position: chr3:579260-579576 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 0

Conread position: 253-554
Cow position: chr3:12665223-12665541 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 0

Conread position: 253-554
Cow position: chr3:34015497-34015815 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 0

Conread position: 253-554
Cow position: chr3:36416825-36417143 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 0

Conread position: 253-562
Cow position: chr3:42424408-42424089 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 224
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 116, 66

Conread position: 253-562
Cow position: chr3:59864568-59864890 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 82

Conread position: 254-445
Cow position: chr3:51547847-51548047 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 156
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 131, 5

Conread position: 254-553
Cow position: chr3:42500157-42500465 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 215
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 57, 106

Conread position: 257-520
Cow position: chr3:22272593-22272315 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 207
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 12, 72

Conread position: 259-522
Cow position: chr3:17059363-17059096 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 184
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 16, 52

Conread position: 259-554
Cow position: chr3:21779686-21779374 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 261-496
Cow position: chr3:30333763-30334007 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 180
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 124, 31

Conread position: 261-524
Cow position: chr3:13117959-13117688 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 60

Conread position: 261-553
Cow position: chr3:19794998-19794689 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 0

Conread position: 261-554
Cow position: chr3:34464461-34464769 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 261-554
Cow position: chr3:55461563-55461260 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 207
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 116, 228

Conread position: 262-519
Cow position: chr3:79595730-79596001 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 16

Conread position: 262-562
Cow position: chr3:68043411-68043094 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 219
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 22, 165

Conread position: 263-554
Cow position: chr3:35043255-35043563 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 265-534
Cow position: chr3:58129188-58129475 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 192
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 56, 0

Conread position: 265-554
Cow position: chr3:46682931-46683236 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 278

Conread position: 265-566
Cow position: chr3:2852139-2851831 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 227
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 125, 91

Conread position: 266-554
Cow position: chr3:53787947-53788251 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 292

Conread position: 267-540
Cow position: chr3:37451200-37451491 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 210
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 113, 0

Conread position: 276-566
Cow position: chr3:70322564-70322260 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 220
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 82, 295

Conread position: 277-592
Cow position: chr3:64282207-64281876 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 234
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 7, 89

Conread position: 279-554
Cow position: chr3:41207454-41207162 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 0

Conread position: 283-566
Cow position: chr3:35056097-35056392 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 52

Conread position: 284-562
Cow position: chr3:77366567-77366296 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 53

Conread position: 285-554
Cow position: chr3:26891608-26891894 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 0

Conread position: 285-569
Cow position: chr3:26660842-26660548 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 202
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 72, 129

Conread position: 286-432
Cow position: chr3:45698546-45698686 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 113
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 94, 0

Conread position: 289-451
Cow position: chr3:70336552-70336396 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 126
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 45, 0

Conread position: 289-554
Cow position: chr3:65536236-65536518 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 208
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 96, 0

Conread position: 289-554
Cow position: chr3:69271723-69272005 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 0

Conread position: 292-562
Cow position: chr3:7677618-7677901 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 206
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 86, 32

Conread position: 292-562
Cow position: chr3:52651816-52651544 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 206
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 149, 86

Conread position: 292-563
Cow position: chr3:37599861-37600142 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 44

Conread position: 292-564
Cow position: chr3:33633894-33633628 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 194
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 155, 74

Conread position: 292-566
Cow position: chr3:66977794-66978074 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 210
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 93, 32

Conread position: 294-553
Cow position: chr3:17460351-17460619 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 203
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 74, 29

Conread position: 295-555
Cow position: chr3:15988067-15988344 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 198
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 83, 0

Conread position: 295-562
Cow position: chr3:22235371-22235088 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 214
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 43, 24

Conread position: 295-562
Cow position: chr3:33254731-33254452 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 17

Conread position: 297-521
Cow position: chr3:4017636-4017872 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 170
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 89, 40

Conread position: 298-554
Cow position: chr3:70215302-70215575 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 0

Conread position: 301-554
Cow position: chr3:14028119-14028389 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 202
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 84, 0

Conread position: 301-562
Cow position: chr3:14922786-14923063 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 203
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 84, 257

Conread position: 302-540
Cow position: chr3:46006239-46006482 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 178
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 116, 10

Conread position: 304-563
Cow position: chr3:24432518-24432794 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 204
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 81, 0

Conread position: 305-563
Cow position: chr3:29391984-29391709 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 205
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 41, 0

Conread position: 307-569
Cow position: chr3:58766283-58766562 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 192
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 71, 0

Conread position: 308-554
Cow position: chr3:28471494-28471753 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 193
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 77, 211

Conread position: 308-562
Cow position: chr3:25753395-25753663 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 199
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 70, 266

Conread position: 308-569
Cow position: chr3:14724260-14724532 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 205
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 72, 126

Conread position: 311-554
Cow position: chr3:1299241-1299481 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 175
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 136, 64

Conread position: 311-554
Cow position: chr3:39921801-39921542 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 193
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 75, 53

Conread position: 317-554
Cow position: chr3:40205553-40205806 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 190
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 66, 246

Conread position: 318-566
Cow position: chr3:22220293-22220554 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 192
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 67, 18

Conread position: 324-562
Cow position: chr3:60932426-60932676 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 193
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 59, 12

Conread position: 324-563
Cow position: chr3:14613189-14613439 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 186
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 61, 244

Conread position: 324-569
Cow position: chr3:68500616-68500879 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 188
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 61, 0

Conread position: 325-538
Cow position: chr3:77472826-77472602 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 168
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 58, 24

Conread position: 327-554
Cow position: chr3:59118619-59118375 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 175
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 58, 0

Conread position: 327-562
Cow position: chr3:76136478-76136732 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 196
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 58, 242

Conread position: 328-554
Cow position: chr3:16620595-16620352 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 174
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 57, 0

Conread position: 330-554
Cow position: chr3:12931929-12932170 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 177
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 55, 0

Conread position: 341-554
Cow position: chr3:28765238-28765008 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 161
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 44, 0

Conread position: 341-554
Cow position: chr3:39231885-39232115 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 166
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 44, 0

Conread position: 344-554
Cow position: chr3:6024682-6024455 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 166
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 41, 0

Conread position: 344-557
Cow position: chr3:73763454-73763224 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 167
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 36, 0

Conread position: 345-569
Cow position: chr3:49976349-49976106 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 173
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 40, 186

Conread position: 364-554
Cow position: chr3:52045813-52045616 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 140
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 79, 0

Conread position: 378-555
Cow position: chr3:64293745-64293925 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 133
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 9, 0

Conread position: 378-566
Cow position: chr3:39878958-39878764 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 146
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 72, 185

Conread position: 384-567
Cow position: chr3:11411822-11411633 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 137
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 58, 170

Conread position: 386-540
Cow position: chr3:13291334-13291494 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 117
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 63, 0

Conread position: 386-540
Cow position: chr3:30329440-30329279 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 122
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 57, 0

Conread position: 386-540
Cow position: chr3:53525797-53525645 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 79, 0

Conread position: 386-550
Cow position: chr3:59607521-59607691 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 122
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 56, 0

Conread position: 386-554
Cow position: chr3:2507412-2507238 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 135
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 64, 0

Conread position: 386-554
Cow position: chr3:4135753-4135578 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 133
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 63, 0

Conread position: 386-554
Cow position: chr3:6170700-6170875 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 130
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 56, 0

Conread position: 386-554
Cow position: chr3:13360676-13360851 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 63, 0

Conread position: 386-554
Cow position: chr3:19958823-19958998 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 63, 0

Conread position: 386-554
Cow position: chr3:20074316-20074491 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 131
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 57, 0

Conread position: 386-554
Cow position: chr3:26974410-26974236 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 124
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 59, 0

Conread position: 386-554
Cow position: chr3:27547207-27547035 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 131
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 55, 145

Conread position: 386-554
Cow position: chr3:30752812-30752987 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 131
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 57, 0

Conread position: 386-554
Cow position: chr3:36594927-36595102 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 132
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 63, 0

Conread position: 386-554
Cow position: chr3:37040517-37040694 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 27, 0

Conread position: 386-554
Cow position: chr3:50217220-50217395 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 57, 0

Conread position: 386-554
Cow position: chr3:58336535-58336710 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 132
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 61, 0

Conread position: 386-554
Cow position: chr3:65178600-65178774 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 132
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 63, 0

Conread position: 386-554
Cow position: chr3:71245824-71245999 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 126
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 64, 0

Conread position: 386-555
Cow position: chr3:54876892-54877064 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 133
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 64, 114

Conread position: 386-562
Cow position: chr3:18184143-18184322 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 134
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 64, 174

Conread position: 386-562
Cow position: chr3:29281988-29282170 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 134
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 64, 177

Conread position: 386-563
Cow position: chr3:16156752-16156933 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 143
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 64, 154

Conread position: 386-569
Cow position: chr3:22918751-22918940 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 148
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 64, 177

Conread position: 386-569
Cow position: chr3:51256166-51256361 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 143
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 64, 0

Conread position: 387-562
Cow position: chr3:28675052-28675227 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 124
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 167, 47

Conread position: 387-575
Cow position: chr3:1831627-1831435 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 140
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 62, 92

Conread position: 388-562
Cow position: chr3:14452891-14453069 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 134
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 61, 46

Conread position: 388-563
Cow position: chr3:46349456-46349637 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 129
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 62, 50

Conread position: 388-569
Cow position: chr3:18460464-18460279 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 143
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 44, 125

Conread position: 393-551
Cow position: chr3:11018688-11018845 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 125
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 50, 0

Conread position: 396-554
Cow position: chr3:6884383-6884549 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 121
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 53, 0

Conread position: 396-562
Cow position: chr3:21100042-21100214 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 130
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 53, 170

Conread position: 396-566
Cow position: chr3:81375013-81374837 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 135
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 53, 170

Conread position: 411-553
Cow position: chr3:61278004-61278150 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 36, 0

Show alignments to all cow chromosomes.