Cow genome map

Conread name: rpigcb_9121.y1

Conread position: 275-484
Cow position: chr12:9439297-9439506 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 160
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 33, 21

Conread position: 307-523
Cow position: chr12:44732966-44733185 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 161
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 37, 11

Conread position: 340-491
Cow position: chr12:38154981-38155133 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 115
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 55, 132

Conread position: 341-461
Cow position: chr12:24397076-24397196 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 101
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 54, 14

Conread position: 341-498
Cow position: chr12:29966191-29966038 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 124
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 36, 31

Conread position: 341-516
Cow position: chr12:5635364-5635535 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 136
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 48, 136

Conread position: 341-521
Cow position: chr12:13988458-13988280 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 133
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 54, 127

Conread position: 341-523
Cow position: chr12:4596553-4596372 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 147
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 36, 31

Conread position: 341-523
Cow position: chr12:31948201-31948025 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 143
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 54, 41

Conread position: 344-471
Cow position: chr12:29200308-29200439 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 102
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 51, 0

Conread position: 345-444
Cow position: chr12:30042810-30042709 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 85
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 50, 0

Conread position: 345-455
Cow position: chr12:25417486-25417597 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 90
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 56, 0

Conread position: 345-459
Cow position: chr12:18938953-18938837 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 92
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 47, 0

Conread position: 345-466
Cow position: chr12:22323189-22323313 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 51, 0

Conread position: 345-468
Cow position: chr12:11109839-11109714 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 101
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 50, 0

Conread position: 345-470
Cow position: chr12:39149967-39150094 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 50, 0

Conread position: 345-479
Cow position: chr12:25355671-25355804 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 50, 111

Conread position: 345-480
Cow position: chr12:25441726-25441589 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 107
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 56, 128

Conread position: 345-497
Cow position: chr12:37993647-37993800 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 123
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 50, 127

Conread position: 345-522
Cow position: chr12:2286666-2286493 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 130
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 50, 101

Conread position: 345-522
Cow position: chr12:24222436-24222611 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 133
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 50, 127

Conread position: 345-522
Cow position: chr12:38126439-38126619 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 135
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 51, 123

Conread position: 345-523
Cow position: chr12:3950261-3950440 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 142
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 51, 15

Conread position: 345-523
Cow position: chr12:21780246-21780071 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 147
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 51, 10

Conread position: 345-523
Cow position: chr12:42254751-42254574 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 140
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 51, 15

Conread position: 346-459
Cow position: chr12:45782310-45782195 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 92
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 346-462
Cow position: chr12:3057170-3057053 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 49, 15

Conread position: 346-463
Cow position: chr12:25596719-25596603 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 96
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 50, 0

Conread position: 346-472
Cow position: chr12:3586202-3586074 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 102
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 49, 0

Conread position: 346-478
Cow position: chr12:22859547-22859417 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 106
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 49, 80

Conread position: 346-481
Cow position: chr12:43854977-43854843 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 114
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 49, 90

Conread position: 346-488
Cow position: chr12:3675445-3675586 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 117
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 49, 37

Conread position: 346-489
Cow position: chr12:1701721-1701865 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 49, 131

Conread position: 346-492
Cow position: chr12:15389157-15389008 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 117
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 17, 124

Conread position: 346-493
Cow position: chr12:26147086-26147235 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 118
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 49, 0

Conread position: 346-496
Cow position: chr12:10895469-10895620 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 116
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 49, 122

Conread position: 346-498
Cow position: chr12:7457461-7457612 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 126
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 49, 106

Conread position: 346-498
Cow position: chr12:15163223-15163071 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 121
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 49, 101

Conread position: 346-501
Cow position: chr12:13911489-13911653 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 126
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 49, 134

Conread position: 346-502
Cow position: chr12:28256971-28257127 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 14, 127

Conread position: 346-503
Cow position: chr12:15495983-15495825 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 49, 128

Conread position: 346-504
Cow position: chr12:7920326-7920168 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 130
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 49, 126

Conread position: 346-508
Cow position: chr12:4866901-4866737 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 133
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 49, 126

Conread position: 346-516
Cow position: chr12:15173907-15173738 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 133
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 49, 126

Conread position: 346-516
Cow position: chr12:27037366-27037537 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 127
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 49, 126

Conread position: 346-520
Cow position: chr12:23446804-23446630 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 136
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 49, 96

Conread position: 346-520
Cow position: chr12:34333193-34333019 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 127
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 49, 15

Conread position: 346-521
Cow position: chr12:3623778-3623603 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 136
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 49, 126

Conread position: 346-521
Cow position: chr12:15050541-15050708 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 139
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 55, 48

Conread position: 346-522
Cow position: chr12:7110281-7110108 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 140
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 49, 126

Conread position: 346-522
Cow position: chr12:7978121-7977943 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 139
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 49, 89

Conread position: 346-522
Cow position: chr12:18103528-18103703 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 144
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 49, 106

Conread position: 346-522
Cow position: chr12:26749868-26750051 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 145
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 49, 126

Conread position: 346-522
Cow position: chr12:41159671-41159498 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 137
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 49, 80

Conread position: 346-523
Cow position: chr12:1773577-1773758 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 137
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 49, 126

Conread position: 346-523
Cow position: chr12:5609428-5609604 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 140
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 43, 86

Conread position: 346-523
Cow position: chr12:7000521-7000697 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 137
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 41, 49

Conread position: 346-523
Cow position: chr12:11587858-11587680 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 145
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 49, 126

Conread position: 346-523
Cow position: chr12:11836318-11836138 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 50, 128

Conread position: 346-523
Cow position: chr12:19866326-19866149 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 136
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 49, 129

Conread position: 346-523
Cow position: chr12:23916926-23916750 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 144
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 49, 89

Conread position: 346-523
Cow position: chr12:23939301-23939130 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 137
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 144, 37

Conread position: 346-523
Cow position: chr12:29675058-29675232 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 139
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 50, 125

Conread position: 346-523
Cow position: chr12:31959963-31959794 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 131
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 49, 95

Conread position: 346-523
Cow position: chr12:42282752-42282926 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 137
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 48, 76

Conread position: 347-476
Cow position: chr12:26868731-26868860 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 105
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 48, 83

Conread position: 347-489
Cow position: chr12:43354045-43354183 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 48, 14

Conread position: 347-494
Cow position: chr12:10834050-10834189 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 119
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 48, 72

Conread position: 347-497
Cow position: chr12:40157942-40158090 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 48, 62

Conread position: 347-508
Cow position: chr12:9514444-9514282 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 123
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 48, 121

Conread position: 347-520
Cow position: chr12:42286054-42285878 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 134
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 14, 127

Conread position: 348-469
Cow position: chr12:42143241-42143119 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 101
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 47, 87

Conread position: 348-523
Cow position: chr12:4162273-4162460 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 141
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 47, 132

Conread position: 349-461
Cow position: chr12:16386376-16386490 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 91
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 46, 0

Conread position: 349-516
Cow position: chr12:35368723-35368555 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 144
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 46, 123

Conread position: 351-494
Cow position: chr12:42181050-42181194 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 119
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 44, 121

Conread position: 351-502
Cow position: chr12:4793276-4793124 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 122
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 45, 121

Conread position: 351-512
Cow position: chr12:45090273-45090430 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 121
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 45, 64

Conread position: 351-515
Cow position: chr12:3879901-3880066 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 130
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 44, 121

Conread position: 351-519
Cow position: chr12:41474168-41473998 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 128
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 39, 133

Conread position: 351-522
Cow position: chr12:15700159-15699980 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 139
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 45, 125

Conread position: 351-522
Cow position: chr12:25188267-25188094 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 132
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 48, 125

Conread position: 351-523
Cow position: chr12:9914868-9914696 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 139
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 44, 121

Conread position: 351-523
Cow position: chr12:37008628-37008797 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 128
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 45, 77

Conread position: 352-501
Cow position: chr12:14223059-14222910 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 118
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 43, 116

Conread position: 352-505
Cow position: chr12:36790734-36790889 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 122
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 43, 120

Conread position: 352-519
Cow position: chr12:25320992-25320833 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 131
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 25, 21

Conread position: 352-521
Cow position: chr12:31269232-31269059 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 135
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 43, 120

Conread position: 352-523
Cow position: chr12:5714704-5714535 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 132
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 43, 15

Conread position: 352-523
Cow position: chr12:36500869-36501039 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 134
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 43, 117

Conread position: 353-522
Cow position: chr12:4720024-4719853 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 138
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 43, 115

Conread position: 354-523
Cow position: chr12:40200773-40200610 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 136
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 41, 76

Conread position: 355-461
Cow position: chr12:44559925-44559817 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 91
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 40, 0

Conread position: 355-487
Cow position: chr12:44542341-44542206 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 108
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 49, 42

Conread position: 355-507
Cow position: chr12:18765898-18766049 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 120
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 40, 117

Conread position: 355-520
Cow position: chr12:27563302-27563469 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 134
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 40, 117

Conread position: 355-523
Cow position: chr12:22882130-22881961 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 128
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 40, 21

Conread position: 355-523
Cow position: chr12:25280427-25280597 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 41, 117

Conread position: 355-523
Cow position: chr12:34161488-34161323 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 132
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 40, 102

Conread position: 356-502
Cow position: chr12:29483812-29483959 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 39, 116

Conread position: 356-516
Cow position: chr12:4135151-4134991 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 131
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 39, 116

Conread position: 356-520
Cow position: chr12:7960510-7960674 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 120
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 99, 46

Show alignments to all cow chromosomes.