Cow genome map
| Conread name: | rpigcb_9121.y1 |
| Conread position: | 275-516 |
| Cow position: | chr20:31324021-31323782 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 176 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 81, 24 |
| Conread position: | 341-491 |
| Cow position: | chr20:14283090-14282939 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 54, 131 |
| Conread position: | 341-523 |
| Cow position: | chr20:16291858-16291682 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 54, 131 |
| Conread position: | 341-523 |
| Cow position: | chr20:18831708-18831887 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 54, 124 |
| Conread position: | 345-468 |
| Cow position: | chr20:11920566-11920689 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 50, 73 |
| Conread position: | 345-491 |
| Cow position: | chr20:39415916-39415769 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 49, 122 |
| Conread position: | 345-497 |
| Cow position: | chr20:30744556-30744708 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 50, 7 |
| Conread position: | 345-510 |
| Cow position: | chr20:2742972-2743137 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 50, 10 |
| Conread position: | 345-522 |
| Cow position: | chr20:34097787-34097968 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 151 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 50, 132 |
| Conread position: | 345-523 |
| Cow position: | chr20:354735-354908 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 50, 90 |
| Conread position: | 345-523 |
| Cow position: | chr20:5814732-5814557 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 50, 90 |
| Conread position: | 345-523 |
| Cow position: | chr20:6248435-6248615 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 50, 127 |
| Conread position: | 345-523 |
| Cow position: | chr20:16097007-16096829 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 51, 127 |
| Conread position: | 345-523 |
| Cow position: | chr20:20124868-20125042 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 50, 88 |
| Conread position: | 346-461 |
| Cow position: | chr20:8021291-8021174 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 346-462 |
| Cow position: | chr20:14755675-14755792 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 50, 113 |
| Conread position: | 346-464 |
| Cow position: | chr20:2148028-2148147 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 346-464 |
| Cow position: | chr20:24002766-24002646 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 346-465 |
| Cow position: | chr20:37358021-37357902 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 49, 107 |
| Conread position: | 346-467 |
| Cow position: | chr20:7622818-7622939 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 49, 60 |
| Conread position: | 346-468 |
| Cow position: | chr20:31845120-31845244 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 96 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 346-478 |
| Cow position: | chr20:29990283-29990415 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 49, 73 |
| Conread position: | 346-491 |
| Cow position: | chr20:34202800-34202653 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 346-492 |
| Cow position: | chr20:14490411-14490269 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 49, 81 |
| Conread position: | 346-495 |
| Cow position: | chr20:23590584-23590732 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 49, 107 |
| Conread position: | 346-502 |
| Cow position: | chr20:10245888-10246045 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 49, 126 |
| Conread position: | 346-503 |
| Cow position: | chr20:14917450-14917293 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 49, 126 |
| Conread position: | 346-505 |
| Cow position: | chr20:33532468-33532307 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 346-508 |
| Cow position: | chr20:35727765-35727931 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 49, 126 |
| Conread position: | 346-510 |
| Cow position: | chr20:14739657-14739819 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 49, 33 |
| Conread position: | 346-514 |
| Cow position: | chr20:1824463-1824635 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 49, 128 |
| Conread position: | 346-514 |
| Cow position: | chr20:24712006-24711833 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 49, 122 |
| Conread position: | 346-515 |
| Cow position: | chr20:5950478-5950645 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 49, 126 |
| Conread position: | 346-519 |
| Cow position: | chr20:32847510-32847334 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 50, 128 |
| Conread position: | 346-520 |
| Cow position: | chr20:34251507-34251688 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 49, 127 |
| Conread position: | 346-521 |
| Cow position: | chr20:11135588-11135772 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 49, 134 |
| Conread position: | 346-521 |
| Cow position: | chr20:40158065-40157891 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 49, 126 |
| Conread position: | 346-522 |
| Cow position: | chr20:6054344-6054526 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 49, 126 |
| Conread position: | 346-522 |
| Cow position: | chr20:11008335-11008158 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 49, 126 |
| Conread position: | 346-522 |
| Cow position: | chr20:13983520-13983344 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 52, 17 |
| Conread position: | 346-522 |
| Cow position: | chr20:33434995-33435177 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 55, 37 |
| Conread position: | 346-523 |
| Cow position: | chr20:13876546-13876716 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 49, 76 |
| Conread position: | 346-523 |
| Cow position: | chr20:14564216-14564042 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 49, 126 |
| Conread position: | 346-523 |
| Cow position: | chr20:17251882-17251704 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 149 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 49, 106 |
| Conread position: | 346-523 |
| Cow position: | chr20:19237240-19237066 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 49, 123 |
| Conread position: | 346-523 |
| Cow position: | chr20:19751472-19751296 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 49, 126 |
| Conread position: | 346-523 |
| Cow position: | chr20:20739122-20739298 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 49, 108 |
| Conread position: | 346-523 |
| Cow position: | chr20:20967486-20967307 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 153 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 126 |
| Conread position: | 346-523 |
| Cow position: | chr20:21345598-21345416 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 49, 128 |
| Conread position: | 346-523 |
| Cow position: | chr20:21372473-21372295 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 49, 127 |
| Conread position: | 346-523 |
| Cow position: | chr20:29805494-29805673 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 49, 125 |
| Conread position: | 347-462 |
| Cow position: | chr20:19201695-19201578 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 347-479 |
| Cow position: | chr20:36312344-36312477 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 49, 125 |
| Conread position: | 347-522 |
| Cow position: | chr20:35741932-35741755 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 48, 125 |
| Conread position: | 348-471 |
| Cow position: | chr20:18763297-18763180 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 348-471 |
| Cow position: | chr20:21291823-21291698 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 348-509 |
| Cow position: | chr20:20898427-20898589 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 47, 120 |
| Conread position: | 348-516 |
| Cow position: | chr20:4945091-4945253 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 47, 70 |
| Conread position: | 349-496 |
| Cow position: | chr20:1139606-1139753 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 43, 70 |
| Conread position: | 349-523 |
| Cow position: | chr20:22959186-22959355 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 148 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 46, 123 |
| Conread position: | 350-517 |
| Cow position: | chr20:5365087-5364922 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 45, 85 |
| Conread position: | 350-522 |
| Cow position: | chr20:9537293-9537126 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 45, 76 |
| Conread position: | 351-467 |
| Cow position: | chr20:2316265-2316383 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 351-497 |
| Cow position: | chr20:40127183-40127331 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 44, 124 |
| Conread position: | 351-523 |
| Cow position: | chr20:4332294-4332119 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 44, 125 |
| Conread position: | 351-523 |
| Cow position: | chr20:6096335-6096505 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 44, 121 |
| Conread position: | 351-523 |
| Cow position: | chr20:29845210-29845038 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 44, 22 |
| Conread position: | 352-488 |
| Cow position: | chr20:7417008-7417145 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 41, 120 |
| Conread position: | 352-493 |
| Cow position: | chr20:15565670-15565810 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 43, 61 |
| Conread position: | 352-495 |
| Cow position: | chr20:15589202-15589056 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 43, 124 |
| Conread position: | 352-496 |
| Cow position: | chr20:4227497-4227355 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 40, 79 |
| Conread position: | 352-496 |
| Cow position: | chr20:40782120-40781975 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 43, 120 |
| Conread position: | 352-516 |
| Cow position: | chr20:361031-361189 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 43, 68 |
| Conread position: | 352-516 |
| Cow position: | chr20:14879948-14879782 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 43, 122 |
| Conread position: | 352-522 |
| Cow position: | chr20:16941129-16941301 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 43, 97 |
| Conread position: | 352-523 |
| Cow position: | chr20:12126145-12126316 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 43, 122 |
| Conread position: | 352-523 |
| Cow position: | chr20:28594446-28594271 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 42, 74 |
| Conread position: | 353-522 |
| Cow position: | chr20:6372405-6372571 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 48, 60 |
| Conread position: | 353-523 |
| Cow position: | chr20:6240363-6240533 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 43, 119 |
| Conread position: | 355-516 |
| Cow position: | chr20:40446485-40446326 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 40, 101 |
| Conread position: | 360-520 |
| Cow position: | chr20:36040626-36040463 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 35, 113 |
| Conread position: | 388-495 |
| Cow position: | chr20:23781019-23780911 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 8, 85 |
| Conread position: | 394-521 |
| Cow position: | chr20:22313044-22313172 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 9, 78 |
Show alignments to all cow chromosomes.