Cow genome map
| Conread name: | rpigcb_9121.y1 |
| Conread position: | 333-522 |
| Cow position: | chr23:21309275-21309464 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 63, 50 |
| Conread position: | 334-488 |
| Cow position: | chr23:14569366-14569519 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 61, 17 |
| Conread position: | 340-523 |
| Cow position: | chr23:35239481-35239295 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 55, 79 |
| Conread position: | 341-488 |
| Cow position: | chr23:16447559-16447705 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 54, 97 |
| Conread position: | 341-515 |
| Cow position: | chr23:4003776-4003595 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 52, 133 |
| Conread position: | 341-522 |
| Cow position: | chr23:1426856-1427036 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 53, 131 |
| Conread position: | 341-523 |
| Cow position: | chr23:306652-306466 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 54, 133 |
| Conread position: | 341-523 |
| Cow position: | chr23:307585-307399 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 54, 133 |
| Conread position: | 341-523 |
| Cow position: | chr23:4877490-4877304 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 54, 131 |
| Conread position: | 341-523 |
| Cow position: | chr23:5436513-5436697 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 54, 133 |
| Conread position: | 345-481 |
| Cow position: | chr23:32621411-32621272 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 50, 129 |
| Conread position: | 345-483 |
| Cow position: | chr23:24779417-24779556 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 50, 127 |
| Conread position: | 345-495 |
| Cow position: | chr23:28206723-28206572 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 50, 127 |
| Conread position: | 345-521 |
| Cow position: | chr23:2471128-2470945 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 50, 127 |
| Conread position: | 345-521 |
| Cow position: | chr23:40648605-40648784 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 16, 132 |
| Conread position: | 345-522 |
| Cow position: | chr23:187304-187126 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 50, 127 |
| Conread position: | 345-523 |
| Cow position: | chr23:3244343-3244519 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 50, 127 |
| Conread position: | 345-523 |
| Cow position: | chr23:33622024-33622205 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 49, 127 |
| Conread position: | 346-441 |
| Cow position: | chr23:38118082-38117985 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 83 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 346-455 |
| Cow position: | chr23:3979637-3979749 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 93 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 346-464 |
| Cow position: | chr23:5203808-5203927 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 346-466 |
| Cow position: | chr23:1798235-1798113 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 346-470 |
| Cow position: | chr23:1480764-1480641 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 49, 109 |
| Conread position: | 346-470 |
| Cow position: | chr23:3204903-3204777 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 346-479 |
| Cow position: | chr23:5686497-5686631 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 48, 126 |
| Conread position: | 346-486 |
| Cow position: | chr23:18739339-18739481 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 49, 127 |
| Conread position: | 346-488 |
| Cow position: | chr23:3835471-3835613 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 31, 27 |
| Conread position: | 346-488 |
| Cow position: | chr23:35656533-35656394 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 8, 82 |
| Conread position: | 346-495 |
| Cow position: | chr23:7174002-7173850 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 49, 58 |
| Conread position: | 346-496 |
| Cow position: | chr23:799544-799704 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 48, 136 |
| Conread position: | 346-496 |
| Cow position: | chr23:13137811-13137962 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 49, 122 |
| Conread position: | 346-496 |
| Cow position: | chr23:18037429-18037284 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 49, 103 |
| Conread position: | 346-500 |
| Cow position: | chr23:8698545-8698389 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 50, 126 |
| Conread position: | 346-501 |
| Cow position: | chr23:9226403-9226252 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 55, 39 |
| Conread position: | 346-503 |
| Cow position: | chr23:7574500-7574657 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 49, 113 |
| Conread position: | 346-507 |
| Cow position: | chr23:14895549-14895710 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 49, 126 |
| Conread position: | 346-508 |
| Cow position: | chr23:13673907-13674070 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 49, 126 |
| Conread position: | 346-512 |
| Cow position: | chr23:26283847-26283682 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 346-516 |
| Cow position: | chr23:38152-37976 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 49, 132 |
| Conread position: | 346-516 |
| Cow position: | chr23:18823114-18822944 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 48, 126 |
| Conread position: | 346-519 |
| Cow position: | chr23:4104520-4104355 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 49, 79 |
| Conread position: | 346-521 |
| Cow position: | chr23:18415931-18416097 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 346-522 |
| Cow position: | chr23:1656019-1655843 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 47, 126 |
| Conread position: | 346-522 |
| Cow position: | chr23:10553884-10554060 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 49, 126 |
| Conread position: | 346-523 |
| Cow position: | chr23:13946162-13945986 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 49, 82 |
| Conread position: | 346-523 |
| Cow position: | chr23:16582785-16582961 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 49, 126 |
| Conread position: | 346-523 |
| Cow position: | chr23:22396322-22396501 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 125, 71 |
| Conread position: | 346-523 |
| Cow position: | chr23:24479837-24480012 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 11, 51 |
| Conread position: | 346-523 |
| Cow position: | chr23:26794793-26794965 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 346-523 |
| Cow position: | chr23:29106951-29107125 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 49, 120 |
| Conread position: | 346-523 |
| Cow position: | chr23:38502983-38503160 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 92, 44 |
| Conread position: | 347-515 |
| Cow position: | chr23:4972889-4972720 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 49, 77 |
| Conread position: | 347-522 |
| Cow position: | chr23:5436880-5437049 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 47, 120 |
| Conread position: | 347-522 |
| Cow position: | chr23:34356764-34356592 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 49, 58 |
| Conread position: | 348-512 |
| Cow position: | chr23:1759369-1759205 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 47, 124 |
| Conread position: | 349-498 |
| Cow position: | chr23:28944947-28945097 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 45, 125 |
| Conread position: | 350-495 |
| Cow position: | chr23:57041-57189 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 45, 124 |
| Conread position: | 350-516 |
| Cow position: | chr23:18697905-18698068 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 45, 123 |
| Conread position: | 350-522 |
| Cow position: | chr23:20557724-20557897 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 45, 122 |
| Conread position: | 350-523 |
| Cow position: | chr23:1701292-1701118 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 45, 122 |
| Conread position: | 350-523 |
| Cow position: | chr23:19765474-19765303 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 45, 61 |
| Conread position: | 351-478 |
| Cow position: | chr23:12405701-12405829 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 45, 104 |
| Conread position: | 351-489 |
| Cow position: | chr23:3105004-3104866 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 44, 122 |
| Conread position: | 351-501 |
| Cow position: | chr23:1397919-1398071 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 44, 121 |
| Conread position: | 351-521 |
| Cow position: | chr23:5162549-5162377 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 44, 84 |
| Conread position: | 351-522 |
| Cow position: | chr23:16699922-16700090 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 44, 121 |
| Conread position: | 351-522 |
| Cow position: | chr23:18649951-18649789 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 351-523 |
| Cow position: | chr23:1254807-1254635 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 44, 121 |
| Conread position: | 351-523 |
| Cow position: | chr23:1742473-1742304 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 44, 69 |
| Conread position: | 352-504 |
| Cow position: | chr23:7554408-7554562 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 352-522 |
| Cow position: | chr23:4726910-4726736 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 43, 31 |
| Conread position: | 352-523 |
| Cow position: | chr23:1885054-1885224 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 44, 121 |
| Conread position: | 352-523 |
| Cow position: | chr23:6035549-6035383 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 51, 42 |
| Conread position: | 352-523 |
| Cow position: | chr23:24704409-24704229 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 43, 126 |
| Conread position: | 352-523 |
| Cow position: | chr23:38845718-38845553 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 43, 123 |
| Conread position: | 353-504 |
| Cow position: | chr23:23409850-23409699 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 43, 72 |
| Conread position: | 353-523 |
| Cow position: | chr23:12091240-12091411 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 43, 8 |
| Conread position: | 356-486 |
| Cow position: | chr23:4327586-4327717 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 39, 116 |
| Conread position: | 356-504 |
| Cow position: | chr23:25864583-25864734 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 40, 17 |
| Conread position: | 356-523 |
| Cow position: | chr23:40781444-40781271 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 38, 78 |
| Conread position: | 357-523 |
| Cow position: | chr23:360575-360743 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 38, 61 |
| Conread position: | 361-502 |
| Cow position: | chr23:11224965-11224823 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 35, 107 |
| Conread position: | 363-522 |
| Cow position: | chr23:36309528-36309369 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 33, 102 |
| Conread position: | 407-523 |
| Cow position: | chr23:3522812-3522698 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 96 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 26, 0 |
Show alignments to all cow chromosomes.