Cow genome map
| Conread name: | rpigcb_9121.y1 |
| Conread position: | 318-494 |
| Cow position: | chr25:30656499-30656675 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 28, 18 |
| Conread position: | 332-508 |
| Cow position: | chr25:18564620-18564444 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 63, 102 |
| Conread position: | 340-497 |
| Cow position: | chr25:33311200-33311359 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 55, 133 |
| Conread position: | 341-486 |
| Cow position: | chr25:15218257-15218115 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 54, 100 |
| Conread position: | 341-523 |
| Cow position: | chr25:18906010-18905829 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 54, 131 |
| Conread position: | 343-451 |
| Cow position: | chr25:7403218-7403328 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 345-449 |
| Cow position: | chr25:3983405-3983301 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 89 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 50, 67 |
| Conread position: | 345-487 |
| Cow position: | chr25:15294917-15294774 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 50, 127 |
| Conread position: | 345-498 |
| Cow position: | chr25:10217928-10218082 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 49, 127 |
| Conread position: | 345-520 |
| Cow position: | chr25:7726783-7726611 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 50, 129 |
| Conread position: | 345-523 |
| Cow position: | chr25:13325701-13325522 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 50, 123 |
| Conread position: | 345-523 |
| Cow position: | chr25:38421787-38421609 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 50, 127 |
| Conread position: | 346-454 |
| Cow position: | chr25:22373370-22373480 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 89 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 346-456 |
| Cow position: | chr25:27520638-27520750 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 90 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 346-460 |
| Cow position: | chr25:18646705-18646589 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 346-463 |
| Cow position: | chr25:23016140-23016021 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 346-463 |
| Cow position: | chr25:36369938-36369820 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 346-463 |
| Cow position: | chr25:36375629-36375511 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 346-465 |
| Cow position: | chr25:17724103-17724225 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 346-476 |
| Cow position: | chr25:31514301-31514170 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 49, 126 |
| Conread position: | 346-489 |
| Cow position: | chr25:5808065-5807919 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 346-494 |
| Cow position: | chr25:31230128-31230268 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 346-495 |
| Cow position: | chr25:6473967-6474117 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 49, 126 |
| Conread position: | 346-495 |
| Cow position: | chr25:26161089-26160935 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 49, 130 |
| Conread position: | 346-501 |
| Cow position: | chr25:9002791-9002637 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 12, 125 |
| Conread position: | 346-505 |
| Cow position: | chr25:35109149-35109309 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 53, 130 |
| Conread position: | 346-509 |
| Cow position: | chr25:5474110-5474275 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 49, 126 |
| Conread position: | 346-510 |
| Cow position: | chr25:40904710-40904873 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 46, 126 |
| Conread position: | 346-516 |
| Cow position: | chr25:17704864-17704694 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 49, 126 |
| Conread position: | 346-518 |
| Cow position: | chr25:21267107-21266938 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 89, 50 |
| Conread position: | 346-519 |
| Cow position: | chr25:17119862-17119691 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 49, 91 |
| Conread position: | 346-519 |
| Cow position: | chr25:26306084-26306259 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 49, 126 |
| Conread position: | 346-520 |
| Cow position: | chr25:36017653-36017482 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 49, 74 |
| Conread position: | 346-521 |
| Cow position: | chr25:20008253-20008079 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 49, 127 |
| Conread position: | 346-522 |
| Cow position: | chr25:12097954-12097782 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 8, 59 |
| Conread position: | 346-522 |
| Cow position: | chr25:14196981-14196804 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 55, 48 |
| Conread position: | 346-522 |
| Cow position: | chr25:17658731-17658552 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 49, 128 |
| Conread position: | 346-523 |
| Cow position: | chr25:432928-433106 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 49, 126 |
| Conread position: | 346-523 |
| Cow position: | chr25:1763207-1763033 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 49, 116 |
| Conread position: | 346-523 |
| Cow position: | chr25:17474393-17474570 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 49, 104 |
| Conread position: | 346-523 |
| Cow position: | chr25:18201809-18201982 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 48, 79 |
| Conread position: | 346-523 |
| Cow position: | chr25:35052502-35052678 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 49, 111 |
| Conread position: | 346-523 |
| Cow position: | chr25:36535300-36535493 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 49, 137 |
| Conread position: | 347-466 |
| Cow position: | chr25:33100694-33100574 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 46, 114 |
| Conread position: | 347-479 |
| Cow position: | chr25:10791696-10791828 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 54, 124 |
| Conread position: | 347-517 |
| Cow position: | chr25:26087640-26087467 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 47, 85 |
| Conread position: | 347-521 |
| Cow position: | chr25:8345885-8346057 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 49, 92 |
| Conread position: | 347-523 |
| Cow position: | chr25:26655026-26654853 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 48, 78 |
| Conread position: | 347-523 |
| Cow position: | chr25:30817008-30816829 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 149 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 48, 126 |
| Conread position: | 347-523 |
| Cow position: | chr25:33686566-33686738 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 48, 123 |
| Conread position: | 349-459 |
| Cow position: | chr25:7546626-7546514 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 94 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 349-487 |
| Cow position: | chr25:11780391-11780256 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 45, 79 |
| Conread position: | 349-522 |
| Cow position: | chr25:12305393-12305220 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 46, 119 |
| Conread position: | 350-523 |
| Cow position: | chr25:22730944-22730772 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 45, 56 |
| Conread position: | 351-470 |
| Cow position: | chr25:18491153-18491032 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 351-495 |
| Cow position: | chr25:4009208-4009063 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 44, 117 |
| Conread position: | 351-518 |
| Cow position: | chr25:22242078-22241917 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 45, 79 |
| Conread position: | 351-521 |
| Cow position: | chr25:13672518-13672339 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 44, 140 |
| Conread position: | 351-522 |
| Cow position: | chr25:10504226-10504394 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 44, 84 |
| Conread position: | 351-523 |
| Cow position: | chr25:28187830-28188003 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 44, 130 |
| Conread position: | 351-523 |
| Cow position: | chr25:30619178-30619007 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 44, 83 |
| Conread position: | 352-501 |
| Cow position: | chr25:31762494-31762644 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 44, 121 |
| Conread position: | 352-505 |
| Cow position: | chr25:7581313-7581469 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 43, 124 |
| Conread position: | 352-520 |
| Cow position: | chr25:36762219-36762051 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 43, 120 |
| Conread position: | 352-523 |
| Cow position: | chr25:14513229-14513055 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 43, 125 |
| Conread position: | 352-523 |
| Cow position: | chr25:26224915-26225082 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 43, 120 |
| Conread position: | 353-495 |
| Cow position: | chr25:34241991-34242135 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 42, 119 |
| Conread position: | 353-497 |
| Cow position: | chr25:35090456-35090605 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 71, 124 |
| Conread position: | 353-522 |
| Cow position: | chr25:1838354-1838182 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 43, 123 |
| Conread position: | 354-523 |
| Cow position: | chr25:21894773-21894943 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 41, 65 |
| Conread position: | 355-501 |
| Cow position: | chr25:36840507-36840360 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 41, 56 |
| Conread position: | 357-523 |
| Cow position: | chr25:8157402-8157563 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 44, 35 |
| Conread position: | 361-483 |
| Cow position: | chr25:13550954-13551084 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 34, 117 |
| Conread position: | 376-522 |
| Cow position: | chr25:15377416-15377268 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 26, 55 |
Show alignments to all cow chromosomes.