Cow genome map
| Conread name: | rpigcb_9121.y1 |
| Conread position: | 275-496 |
| Cow position: | chr29:43252479-43252702 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 71, 194 |
| Conread position: | 334-488 |
| Cow position: | chr29:32655958-32656115 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 61, 140 |
| Conread position: | 334-511 |
| Cow position: | chr29:7955858-7956037 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 28, 138 |
| Conread position: | 341-523 |
| Cow position: | chr29:30441062-30440875 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 20, 47 |
| Conread position: | 342-523 |
| Cow position: | chr29:42630243-42630065 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 52, 31 |
| Conread position: | 345-459 |
| Cow position: | chr29:17436867-17436756 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 345-465 |
| Cow position: | chr29:18878360-18878482 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 345-478 |
| Cow position: | chr29:28420876-28420743 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 50, 91 |
| Conread position: | 345-494 |
| Cow position: | chr29:31934500-31934350 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 50, 127 |
| Conread position: | 345-511 |
| Cow position: | chr29:1933450-1933615 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 50, 127 |
| Conread position: | 345-519 |
| Cow position: | chr29:15947288-15947115 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 50, 127 |
| Conread position: | 345-520 |
| Cow position: | chr29:35677422-35677600 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 50, 127 |
| Conread position: | 345-522 |
| Cow position: | chr29:26334270-26334443 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 41, 52 |
| Conread position: | 345-522 |
| Cow position: | chr29:27911711-27911537 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 50, 97 |
| Conread position: | 345-522 |
| Cow position: | chr29:27926894-27926720 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 50, 97 |
| Conread position: | 345-522 |
| Cow position: | chr29:31092568-31092395 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 50, 43 |
| Conread position: | 345-523 |
| Cow position: | chr29:32656555-32656375 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 42, 128 |
| Conread position: | 346-451 |
| Cow position: | chr29:34675889-34675996 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 88 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 346-464 |
| Cow position: | chr29:19420493-19420613 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 346-466 |
| Cow position: | chr29:4441087-4441207 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 55, 7 |
| Conread position: | 346-468 |
| Cow position: | chr29:24051262-24051385 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 346-475 |
| Cow position: | chr29:24365779-24365907 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 49, 55 |
| Conread position: | 346-479 |
| Cow position: | chr29:34359701-34359834 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 49, 112 |
| Conread position: | 346-488 |
| Cow position: | chr29:8163709-8163850 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 49, 112 |
| Conread position: | 346-494 |
| Cow position: | chr29:35084104-35084251 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 49, 14 |
| Conread position: | 346-495 |
| Cow position: | chr29:16609868-16609718 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 49, 128 |
| Conread position: | 346-496 |
| Cow position: | chr29:31981952-31981800 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 8, 127 |
| Conread position: | 346-497 |
| Cow position: | chr29:24187945-24188097 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 49, 126 |
| Conread position: | 346-497 |
| Cow position: | chr29:42883837-42883989 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 78, 41 |
| Conread position: | 346-501 |
| Cow position: | chr29:22720523-22720688 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 49, 68 |
| Conread position: | 346-501 |
| Cow position: | chr29:38582088-38581938 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 49, 101 |
| Conread position: | 346-519 |
| Cow position: | chr29:2262875-2263045 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 50, 88 |
| Conread position: | 346-521 |
| Cow position: | chr29:2056181-2056004 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 49, 126 |
| Conread position: | 346-521 |
| Cow position: | chr29:7103678-7103501 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 49, 126 |
| Conread position: | 346-522 |
| Cow position: | chr29:8669473-8669310 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 346-523 |
| Cow position: | chr29:12025356-12025526 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 49, 71 |
| Conread position: | 346-523 |
| Cow position: | chr29:16657815-16657634 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 120, 27 |
| Conread position: | 346-523 |
| Cow position: | chr29:17297256-17297078 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 49, 126 |
| Conread position: | 346-523 |
| Cow position: | chr29:18403997-18404171 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 49, 78 |
| Conread position: | 346-523 |
| Cow position: | chr29:20167545-20167366 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 18, 127 |
| Conread position: | 346-523 |
| Cow position: | chr29:22175801-22175631 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 49, 126 |
| Conread position: | 346-523 |
| Cow position: | chr29:23874580-23874401 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 52, 122 |
| Conread position: | 346-523 |
| Cow position: | chr29:32894382-32894212 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 49, 6 |
| Conread position: | 346-523 |
| Cow position: | chr29:32926224-32926040 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 49, 124 |
| Conread position: | 346-523 |
| Cow position: | chr29:34744509-34744678 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 346-523 |
| Cow position: | chr29:37618426-37618245 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 48, 127 |
| Conread position: | 346-523 |
| Cow position: | chr29:40097082-40096907 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 49, 82 |
| Conread position: | 347-486 |
| Cow position: | chr29:1220012-1220152 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 48, 125 |
| Conread position: | 347-497 |
| Cow position: | chr29:21509970-21509820 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 48, 96 |
| Conread position: | 347-511 |
| Cow position: | chr29:12310127-12309962 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 48, 125 |
| Conread position: | 347-523 |
| Cow position: | chr29:21443219-21443397 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 48, 121 |
| Conread position: | 347-523 |
| Cow position: | chr29:22519008-22519186 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 48, 43 |
| Conread position: | 348-478 |
| Cow position: | chr29:4053222-4053353 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 47, 124 |
| Conread position: | 349-523 |
| Cow position: | chr29:36220651-36220470 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 46, 119 |
| Conread position: | 350-466 |
| Cow position: | chr29:629654-629536 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 350-509 |
| Cow position: | chr29:5520369-5520529 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 45, 122 |
| Conread position: | 350-520 |
| Cow position: | chr29:26017386-26017557 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 45, 124 |
| Conread position: | 350-522 |
| Cow position: | chr29:4120970-4120793 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 45, 122 |
| Conread position: | 350-523 |
| Cow position: | chr29:13867094-13867268 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 45, 124 |
| Conread position: | 350-523 |
| Cow position: | chr29:21196533-21196708 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 44, 146 |
| Conread position: | 350-523 |
| Cow position: | chr29:34745543-34745717 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 50, 113 |
| Conread position: | 351-465 |
| Cow position: | chr29:14576974-14576858 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 95 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 351-474 |
| Cow position: | chr29:19059968-19060092 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 44, 36 |
| Conread position: | 351-503 |
| Cow position: | chr29:40298905-40299058 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 43, 121 |
| Conread position: | 351-506 |
| Cow position: | chr29:36357241-36357087 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 44, 73 |
| Conread position: | 351-522 |
| Cow position: | chr29:13028555-13028382 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 44, 74 |
| Conread position: | 351-522 |
| Cow position: | chr29:22936386-22936215 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 43, 102 |
| Conread position: | 351-523 |
| Cow position: | chr29:25333346-25333520 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 44, 75 |
| Conread position: | 352-494 |
| Cow position: | chr29:44684212-44684074 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 43, 67 |
| Conread position: | 352-523 |
| Cow position: | chr29:23825787-23825612 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 43, 123 |
| Conread position: | 354-523 |
| Cow position: | chr29:22778061-22778233 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 46, 80 |
| Conread position: | 354-523 |
| Cow position: | chr29:31489431-31489265 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 41, 118 |
| Conread position: | 355-522 |
| Cow position: | chr29:16195951-16195787 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 40, 88 |
| Conread position: | 355-523 |
| Cow position: | chr29:4423328-4423496 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 40, 117 |
| Conread position: | 356-522 |
| Cow position: | chr29:749797-749965 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 21, 17 |
| Conread position: | 358-522 |
| Cow position: | chr29:7966354-7966184 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 39, 114 |
| Conread position: | 363-523 |
| Cow position: | chr29:12625873-12626035 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 34, 113 |
| Conread position: | 364-504 |
| Cow position: | chr29:8686432-8686291 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 35, 109 |
| Conread position: | 429-522 |
| Cow position: | chr29:12004727-12004816 (view UCSC Genome Browser custom track) |
| Alignm length: | 94 |
| Alignm identity: | 82 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 42, 0 |
Show alignments to all cow chromosomes.