Cow genome map

Conread name: rpigcf0_000927.y1

Conread position: 1-484
Cow position:
Alignm length: 493
Alignm identity: 323
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 230, 66

Conread position: 1-556
Cow position:
Alignm length: 566
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 53

Conread position: 2-283
Cow position:
Alignm length: 287
Alignm identity: 195
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 15, 29

Conread position: 3-314
Cow position:
Alignm length: 323
Alignm identity: 219
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 46, 60

Conread position: 3-327
Cow position:
Alignm length: 330
Alignm identity: 218
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 108, 50

Conread position: 3-450
Cow position:
Alignm length: 466
Alignm identity: 320
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 52, 10

Conread position: 3-542
Cow position:
Alignm length: 545
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 36

Conread position: 3-564
Cow position:
Alignm length: 582
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 47

Conread position: 3-566
Cow position:
Alignm length: 596
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 47

Conread position: 3-572
Cow position:
Alignm length: 583
Alignm identity: 384
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 52, 61

Conread position: 5-513
Cow position:
Alignm length: 526
Alignm identity: 352
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 14, 62

Conread position: 5-514
Cow position:
Alignm length: 532
Alignm identity: 332
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 50, 59

Conread position: 5-526
Cow position:
Alignm length: 554
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 50

Conread position: 7-458
Cow position:
Alignm length: 472
Alignm identity: 319
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 103, 42

Conread position: 12-359
Cow position:
Alignm length: 363
Alignm identity: 253
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 43, 52

Conread position: 12-520
Cow position:
Alignm length: 535
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 41

Conread position: 12-572
Cow position:
Alignm length: 580
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 29

Conread position: 12-572
Cow position:
Alignm length: 569
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 42

Conread position: 13-517
Cow position:
Alignm length: 526
Alignm identity: 341
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 42, 51

Conread position: 15-371
Cow position:
Alignm length: 364
Alignm identity: 248
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 96, 48

Conread position: 15-538
Cow position:
Alignm length: 536
Alignm identity: 345
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 225, 44

Conread position: 20-357
Cow position:
Alignm length: 341
Alignm identity: 224
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 35, 44

Conread position: 20-572
Cow position:
Alignm length: 570
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 32

Conread position: 26-443
Cow position:
Alignm length: 438
Alignm identity: 295
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 30, 38

Conread position: 29-331
Cow position:
Alignm length: 312
Alignm identity: 212
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 80, 36

Conread position: 71-317
Cow position:
Alignm length: 255
Alignm identity: 180
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 45, 68

Conread position: 71-534
Cow position:
Alignm length: 476
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 69

Conread position: 72-571
Cow position:
Alignm length: 529
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 106

Conread position: 73-527
Cow position:
Alignm length: 473
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 168

Conread position: 76-534
Cow position:
Alignm length: 473
Alignm identity: 309
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 34, 61

Conread position: 116-532
Cow position:
Alignm length: 429
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 21

Conread position: 144-567
Cow position:
Alignm length: 432
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 180

Conread position: 146-482
Cow position:
Alignm length: 346
Alignm identity: 239
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 34, 151

Conread position: 160-572
Cow position:
Alignm length: 420
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 49

Conread position: 165-572
Cow position:
Alignm length: 417
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 41

Conread position: 166-505
Cow position:
Alignm length: 348
Alignm identity: 238
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 65, 43

Conread position: 166-572
Cow position:
Alignm length: 417
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 17

Conread position: 167-503
Cow position:
Alignm length: 344
Alignm identity: 237
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 64, 38

Conread position: 168-526
Cow position:
Alignm length: 374
Alignm identity: 248
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 67, 21

Conread position: 168-528
Cow position:
Alignm length: 366
Alignm identity: 255
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 81, 62

Conread position: 168-556
Cow position:
Alignm length: 400
Alignm identity: 272
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 67, 160

Conread position: 170-482
Cow position:
Alignm length: 317
Alignm identity: 226
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 103, 36

Conread position: 172-513
Cow position:
Alignm length: 347
Alignm identity: 231
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 59, 97

Conread position: 173-530
Cow position:
Alignm length: 364
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 33

Conread position: 174-485
Cow position:
Alignm length: 328
Alignm identity: 224
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 57, 32

Conread position: 174-527
Cow position:
Alignm length: 361
Alignm identity: 233
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 100, 12

Conread position: 174-530
Cow position:
Alignm length: 378
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 19

Conread position: 174-543
Cow position:
Alignm length: 384
Alignm identity: 261
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 18, 65

Conread position: 174-572
Cow position:
Alignm length: 414
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 149

Conread position: 174-572
Cow position:
Alignm length: 404
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 207

Conread position: 175-517
Cow position:
Alignm length: 361
Alignm identity: 245
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 56, 38

Conread position: 175-542
Cow position:
Alignm length: 378
Alignm identity: 254
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 56, 34

Conread position: 176-508
Cow position:
Alignm length: 345
Alignm identity: 228
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 52, 93

Conread position: 176-572
Cow position:
Alignm length: 406
Alignm identity: 282
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 74, 30

Conread position: 176-572
Cow position:
Alignm length: 400
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 37

Conread position: 177-498
Cow position:
Alignm length: 322
Alignm identity: 218
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 29, 0

Conread position: 180-508
Cow position:
Alignm length: 337
Alignm identity: 226
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 25, 146

Conread position: 181-523
Cow position:
Alignm length: 354
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 10

Conread position: 181-534
Cow position:
Alignm length: 361
Alignm identity: 246
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 54, 25

Conread position: 181-543
Cow position:
Alignm length: 375
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 145

Conread position: 181-566
Cow position:
Alignm length: 391
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 25

Conread position: 181-571
Cow position:
Alignm length: 400
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 10

Conread position: 181-572
Cow position:
Alignm length: 408
Alignm identity: 279
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 42, 25

Conread position: 181-572
Cow position:
Alignm length: 405
Alignm identity: 270
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 45, 25

Conread position: 182-477
Cow position:
Alignm length: 310
Alignm identity: 222
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 7, 37

Conread position: 182-562
Cow position:
Alignm length: 384
Alignm identity: 257
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 47, 90

Conread position: 183-572
Cow position:
Alignm length: 398
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 166

Conread position: 183-572
Cow position:
Alignm length: 395
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 23

Conread position: 184-543
Cow position:
Alignm length: 384
Alignm identity: 265
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 47, 22

Conread position: 185-565
Cow position:
Alignm length: 392
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 82

Conread position: 186-505
Cow position:
Alignm length: 323
Alignm identity: 221
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 45, 81

Conread position: 188-500
Cow position:
Alignm length: 325
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 139

Conread position: 188-508
Cow position:
Alignm length: 329
Alignm identity: 219
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 43, 195

Conread position: 189-513
Cow position:
Alignm length: 329
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 157

Conread position: 190-508
Cow position:
Alignm length: 328
Alignm identity: 215
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 44, 110

Conread position: 191-458
Cow position:
Alignm length: 275
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 138

Conread position: 191-513
Cow position:
Alignm length: 327
Alignm identity: 227
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 76, 27

Conread position: 191-572
Cow position:
Alignm length: 391
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 134

Conread position: 195-529
Cow position:
Alignm length: 342
Alignm identity: 233
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 36, 11

Conread position: 199-526
Cow position:
Alignm length: 333
Alignm identity: 225
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 32, 108

Conread position: 201-572
Cow position:
Alignm length: 375
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 149

Conread position: 202-565
Cow position:
Alignm length: 368
Alignm identity: 243
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 29, 138

Conread position: 202-570
Cow position:
Alignm length: 380
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 18

Conread position: 203-534
Cow position:
Alignm length: 346
Alignm identity: 238
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 28, 209

Conread position: 203-566
Cow position:
Alignm length: 364
Alignm identity: 255
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 21, 0

Conread position: 209-517
Cow position:
Alignm length: 320
Alignm identity: 222
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 22, 115

Conread position: 227-511
Cow position:
Alignm length: 295
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 94

Conread position: 233-572
Cow position:
Alignm length: 349
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 28

Conread position: 234-571
Cow position:
Alignm length: 344
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 52

Conread position: 237-519
Cow position:
Alignm length: 289
Alignm identity: 192
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 10, 85

Conread position: 245-500
Cow position:
Alignm length: 259
Alignm identity: 179
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 74, 21

Conread position: 248-527
Cow position:
Alignm length: 295
Alignm identity: 202
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 56, 44

Conread position: 255-458
Cow position:
Alignm length: 209
Alignm identity: 147
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 97, 89

Conread position: 255-566
Cow position:
Alignm length: 320
Alignm identity: 232
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 61, 42

Conread position: 256-458
Cow position:
Alignm length: 207
Alignm identity: 144
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 122, 88

Conread position: 257-443
Cow position:
Alignm length: 196
Alignm identity: 140
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 15, 85

Conread position: 257-565
Cow position:
Alignm length: 318
Alignm identity: 230
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 93, 79

Conread position: 261-534
Cow position:
Alignm length: 280
Alignm identity: 181
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 92, 251

Conread position: 295-568
Cow position:
Alignm length: 282
Alignm identity: 201
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 18, 172

Conread position: 302-566
Cow position:
Alignm length: 266
Alignm identity: 177
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 141, 51

Conread position: 309-572
Cow position:
Alignm length: 265
Alignm identity: 191
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 23, 30

Conread position: 315-531
Cow position:
Alignm length: 224
Alignm identity: 169
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 35, 161

Conread position: 315-572
Cow position:
Alignm length: 262
Alignm identity: 178
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 43, 84

Conread position: 322-536
Cow position:
Alignm length: 217
Alignm identity: 164
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 89, 22

Conread position: 323-543
Cow position:
Alignm length: 225
Alignm identity: 165
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 27, 61

Conread position: 324-572
Cow position:
Alignm length: 251
Alignm identity: 141
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 27, 6

Conread position: 343-572
Cow position:
Alignm length: 232
Alignm identity: 162
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 11, 57

Conread position: 348-542
Cow position:
Alignm length: 199
Alignm identity: 149
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 28, 63

Conread position: 365-572
Cow position:
Alignm length: 214
Alignm identity: 162
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 12, 116

Conread position: 381-526
Cow position:
Alignm length: 147
Alignm identity: 109
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 100, 31

Conread position: 385-529
Cow position:
Alignm length: 145
Alignm identity: 108
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 16, 0

Conread position: 401-572
Cow position:
Alignm length: 175
Alignm identity: 138
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 63, 151

Conread position: 401-572
Cow position:
Alignm length: 175
Alignm identity: 137
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 63, 151

Conread position: 402-572
Cow position:
Alignm length: 172
Alignm identity: 137
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 150, 141

Conread position: 403-572
Cow position:
Alignm length: 171
Alignm identity: 137
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 6, 22

Conread position: 413-535
Cow position:
Alignm length: 123
Alignm identity: 100
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 413-572
Cow position:
Alignm length: 169
Alignm identity: 132
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 51, 133

Conread position: 421-571
Cow position:
Alignm length: 151
Alignm identity: 116
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 436-570
Cow position:
Alignm length: 135
Alignm identity: 104
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 81, 0

Conread position: 438-572
Cow position:
Alignm length: 135
Alignm identity: 109
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 82, 0

Show alignments to all cow chromosomes.