Cow genome map
| Conread name: | rpigcf0_000927.y1 |
| Conread position: | 3-203 |
| Cow position: | chr10:45104393-45104581 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 3-270 |
| Cow position: | chr10:65968874-65969140 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 105, 49 |
| Conread position: | 3-377 |
| Cow position: | chr10:50315523-50315895 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 260 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 110, 50 |
| Conread position: | 3-502 |
| Cow position: | chr10:41985333-41984838 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 121 |
| Conread position: | 3-566 |
| Cow position: | chr10:51779474-51778925 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 51 |
| Conread position: | 3-570 |
| Cow position: | chr10:11275221-11275763 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 59 |
| Conread position: | 4-440 |
| Cow position: | chr10:668440-668868 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 298 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 51, 60 |
| Conread position: | 5-212 |
| Cow position: | chr10:17705459-17705660 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 132, 49 |
| Conread position: | 5-360 |
| Cow position: | chr10:42459794-42459428 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 61 |
| Conread position: | 5-375 |
| Cow position: | chr10:55098141-55097767 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 62 |
| Conread position: | 5-441 |
| Cow position: | chr10:53058099-53057681 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 310 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 50, 59 |
| Conread position: | 5-508 |
| Cow position: | chr10:14909122-14909620 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 59 |
| Conread position: | 5-572 |
| Cow position: | chr10:28949662-28950183 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 36 |
| Conread position: | 6-519 |
| Cow position: | chr10:30450526-30449998 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 58 |
| Conread position: | 12-530 |
| Cow position: | chr10:22906220-22905687 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 236 |
| Conread position: | 14-170 |
| Cow position: | chr10:19591482-19591330 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 41, 52 |
| Conread position: | 19-174 |
| Cow position: | chr10:6542354-6542512 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 25, 20 |
| Conread position: | 19-376 |
| Cow position: | chr10:49169495-49169130 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 36, 45 |
| Conread position: | 20-318 |
| Cow position: | chr10:53178863-53179159 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 35, 44 |
| Conread position: | 20-376 |
| Cow position: | chr10:6567803-6568156 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 246 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 206, 39 |
| Conread position: | 20-442 |
| Cow position: | chr10:32093381-32093794 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 277 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 35, 42 |
| Conread position: | 20-443 |
| Cow position: | chr10:21709326-21708912 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 291 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 93, 35 |
| Conread position: | 70-379 |
| Cow position: | chr10:22048854-22049186 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 54, 43 |
| Conread position: | 71-377 |
| Cow position: | chr10:15499067-15498734 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 42, 295 |
| Conread position: | 72-341 |
| Cow position: | chr10:40567582-40567848 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 37, 67 |
| Conread position: | 75-379 |
| Cow position: | chr10:35857436-35857129 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 215 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 149, 38 |
| Conread position: | 108-572 |
| Cow position: | chr10:1351586-1352048 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 12 |
| Conread position: | 141-376 |
| Cow position: | chr10:28176712-28176469 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 27, 46 |
| Conread position: | 160-571 |
| Cow position: | chr10:24077956-24077529 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 46 |
| Conread position: | 164-519 |
| Cow position: | chr10:23949216-23948854 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 40, 146 |
| Conread position: | 165-527 |
| Cow position: | chr10:65072404-65072043 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 247 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 66, 101 |
| Conread position: | 167-526 |
| Cow position: | chr10:8077444-8077089 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 251 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 40, 225 |
| Conread position: | 168-516 |
| Cow position: | chr10:15115325-15115677 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 59, 38 |
| Conread position: | 169-460 |
| Cow position: | chr10:30224393-30224693 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 58, 180 |
| Conread position: | 171-552 |
| Cow position: | chr10:17887553-17887933 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 273 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 58, 86 |
| Conread position: | 171-571 |
| Cow position: | chr10:22843395-22843801 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 35 |
| Conread position: | 171-572 |
| Cow position: | chr10:69250241-69250624 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 130 |
| Conread position: | 175-477 |
| Cow position: | chr10:49679761-49680059 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 56, 174 |
| Conread position: | 180-571 |
| Cow position: | chr10:4994834-4994453 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 29 |
| Conread position: | 181-508 |
| Cow position: | chr10:38155179-38155510 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 22, 149 |
| Conread position: | 181-521 |
| Cow position: | chr10:48255501-48255157 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 50, 141 |
| Conread position: | 181-534 |
| Cow position: | chr10:19704780-19704434 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 244 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 50, 88 |
| Conread position: | 181-572 |
| Cow position: | chr10:12876063-12875699 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 25 |
| Conread position: | 182-488 |
| Cow position: | chr10:68979298-68979607 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 225 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 52, 93 |
| Conread position: | 183-572 |
| Cow position: | chr10:41637374-41637763 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 178 |
| Conread position: | 189-566 |
| Cow position: | chr10:58827575-58827201 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 266 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 11, 154 |
| Conread position: | 191-505 |
| Cow position: | chr10:14787804-14787498 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 145, 35 |
| Conread position: | 191-548 |
| Cow position: | chr10:68204358-68204003 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 55 |
| Conread position: | 192-572 |
| Cow position: | chr10:48313321-48312958 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 281 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 33, 17 |
| Conread position: | 193-509 |
| Cow position: | chr10:31855063-31855392 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 235 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 38, 217 |
| Conread position: | 193-527 |
| Cow position: | chr10:57405201-57404861 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 247 |
| Conread position: | 196-542 |
| Cow position: | chr10:49771728-49772069 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 245 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 17, 31 |
| Conread position: | 199-517 |
| Cow position: | chr10:25257327-25257653 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 131 |
| Conread position: | 200-539 |
| Cow position: | chr10:32065863-32066204 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 239 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 28, 65 |
| Conread position: | 227-522 |
| Cow position: | chr10:16669590-16669298 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 217 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 40, 93 |
| Conread position: | 252-532 |
| Cow position: | chr10:52342528-52342803 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 20, 53 |
| Conread position: | 253-566 |
| Cow position: | chr10:33605500-33605178 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 8, 162 |
| Conread position: | 255-566 |
| Cow position: | chr10:66182215-66181906 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 17, 97 |
| Conread position: | 259-506 |
| Cow position: | chr10:28104008-28103772 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 292-505 |
| Cow position: | chr10:19127072-19126856 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 52, 175 |
| Conread position: | 308-567 |
| Cow position: | chr10:36304003-36303739 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 40, 101 |
| Conread position: | 315-540 |
| Cow position: | chr10:52815096-52815323 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 38 |
| Conread position: | 334-572 |
| Cow position: | chr10:22455073-22455305 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 187 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 18, 64 |
| Conread position: | 344-570 |
| Cow position: | chr10:31219886-31220109 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 177 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 40, 9 |
| Conread position: | 348-572 |
| Cow position: | chr10:14392309-14392533 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 29, 65 |
| Conread position: | 398-570 |
| Cow position: | chr10:28566304-28566134 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 401-572 |
| Cow position: | chr10:15618825-15618658 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 145 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 412-556 |
| Cow position: | chr10:2267594-2267454 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 412-556 |
| Cow position: | chr10:41395422-41395561 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 412-572 |
| Cow position: | chr10:48193722-48193564 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 422-571 |
| Cow position: | chr10:43061143-43061000 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 133, 14 |
| Conread position: | 427-571 |
| Cow position: | chr10:67126106-67126241 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 435-572 |
| Cow position: | chr10:3317842-3317977 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 40, 12 |
| Conread position: | 443-572 |
| Cow position: | chr10:58707590-58707712 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 17, 0 |
Show alignments to all cow chromosomes.