Cow genome map
| Conread name: | rpigcf0_000927.y1 |
| Conread position: | 3-534 |
| Cow position: | chr12:31217997-31218522 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 51 |
| Conread position: | 5-370 |
| Cow position: | chr12:15231827-15232190 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 50, 69 |
| Conread position: | 5-443 |
| Cow position: | chr12:25455639-25456094 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 317 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 50, 62 |
| Conread position: | 6-527 |
| Cow position: | chr12:18769547-18769012 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 34 |
| Conread position: | 19-438 |
| Cow position: | chr12:11539597-11539193 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 289 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 184, 29 |
| Conread position: | 21-432 |
| Cow position: | chr12:12939375-12938955 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 34 |
| Conread position: | 71-438 |
| Cow position: | chr12:25619785-25619401 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 135 |
| Conread position: | 73-562 |
| Cow position: | chr12:25364960-25364498 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 330 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 41, 79 |
| Conread position: | 160-566 |
| Cow position: | chr12:10028579-10028974 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 287 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 41, 208 |
| Conread position: | 167-514 |
| Cow position: | chr12:13965076-13964742 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 49, 155 |
| Conread position: | 170-376 |
| Cow position: | chr12:41083763-41083975 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 58, 47 |
| Conread position: | 172-572 |
| Cow position: | chr12:12983170-12982764 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 289 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 62, 5 |
| Conread position: | 176-509 |
| Cow position: | chr12:48211171-48210861 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 237 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 33, 87 |
| Conread position: | 179-529 |
| Cow position: | chr12:5539260-5538907 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 261 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 34, 108 |
| Conread position: | 181-572 |
| Cow position: | chr12:10162247-10161861 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 105 |
| Conread position: | 181-572 |
| Cow position: | chr12:22473671-22474069 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 53 |
| Conread position: | 183-568 |
| Cow position: | chr12:34484213-34483826 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 264 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 47, 30 |
| Conread position: | 185-443 |
| Cow position: | chr12:32399908-32400177 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 49, 28 |
| Conread position: | 186-523 |
| Cow position: | chr12:43104242-43104566 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 45, 89 |
| Conread position: | 191-572 |
| Cow position: | chr12:25513624-25513981 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 275 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 211, 43 |
| Conread position: | 211-566 |
| Cow position: | chr12:3632460-3632839 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 258 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 18, 209 |
| Conread position: | 216-545 |
| Cow position: | chr12:27938657-27939003 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 238 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 44, 276 |
| Conread position: | 247-458 |
| Cow position: | chr12:37394482-37394714 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 252-572 |
| Cow position: | chr12:32221442-32221765 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 97, 157 |
| Conread position: | 261-543 |
| Cow position: | chr12:21064988-21064697 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 207 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 15, 77 |
| Conread position: | 261-572 |
| Cow position: | chr12:18544434-18544733 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 12, 26 |
| Conread position: | 269-507 |
| Cow position: | chr12:8626130-8625887 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 81, 164 |
| Conread position: | 293-571 |
| Cow position: | chr12:16327322-16327595 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 91, 12 |
| Conread position: | 311-572 |
| Cow position: | chr12:10688092-10687834 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 38, 135 |
| Conread position: | 315-567 |
| Cow position: | chr12:12711383-12711126 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 196 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 35, 91 |
| Conread position: | 325-572 |
| Cow position: | chr12:23498003-23498231 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 25, 57 |
| Conread position: | 355-572 |
| Cow position: | chr12:26311198-26310992 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 32, 16 |
| Conread position: | 370-572 |
| Cow position: | chr12:37339911-37340111 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 10, 26 |
| Conread position: | 376-570 |
| Cow position: | chr12:23892437-23892624 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 399-572 |
| Cow position: | chr12:29760708-29760538 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 146 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 400-543 |
| Cow position: | chr12:11306657-11306514 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 401-572 |
| Cow position: | chr12:33277844-33278008 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 404-572 |
| Cow position: | chr12:27423196-27423357 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 412-568 |
| Cow position: | chr12:22026875-22027026 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
Show alignments to all cow chromosomes.