Cow genome map
| Conread name: | rpigcf0_000927.y1 |
| Conread position: | 3-272 |
| Cow position: | chr13:30034741-30034470 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 75, 51 |
| Conread position: | 3-565 |
| Cow position: | chr13:1839795-1839245 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 63 |
| Conread position: | 5-136 |
| Cow position: | chr13:48334444-48334571 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 49, 59 |
| Conread position: | 5-369 |
| Cow position: | chr13:40722301-40722654 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 50, 59 |
| Conread position: | 5-375 |
| Cow position: | chr13:43594702-43595069 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 113, 9 |
| Conread position: | 12-504 |
| Cow position: | chr13:10859565-10860045 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 37 |
| Conread position: | 14-441 |
| Cow position: | chr13:46284218-46284644 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 50 |
| Conread position: | 19-545 |
| Cow position: | chr13:16344077-16343562 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 358 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 36, 45 |
| Conread position: | 21-372 |
| Cow position: | chr13:52922474-52922135 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 34, 43 |
| Conread position: | 61-543 |
| Cow position: | chr13:4604649-4604162 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 86 |
| Conread position: | 64-351 |
| Cow position: | chr13:40789104-40789398 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 44, 76 |
| Conread position: | 71-405 |
| Cow position: | chr13:24822422-24822756 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 39, 56 |
| Conread position: | 71-516 |
| Cow position: | chr13:57745758-57746208 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 52 |
| Conread position: | 72-527 |
| Cow position: | chr13:15945846-15945369 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 324 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 41, 106 |
| Conread position: | 94-376 |
| Cow position: | chr13:14227249-14226970 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 20, 45 |
| Conread position: | 137-534 |
| Cow position: | chr13:6621315-6621709 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 190 |
| Conread position: | 137-567 |
| Cow position: | chr13:46636848-46637269 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 98 |
| Conread position: | 146-543 |
| Cow position: | chr13:22276897-22277309 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 33 |
| Conread position: | 158-520 |
| Cow position: | chr13:29631114-29630749 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 67 |
| Conread position: | 160-556 |
| Cow position: | chr13:16015067-16014672 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 264 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 67, 112 |
| Conread position: | 163-571 |
| Cow position: | chr13:60220321-60220705 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 270 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 184, 43 |
| Conread position: | 165-508 |
| Cow position: | chr13:49848172-49847829 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 229 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 66, 41 |
| Conread position: | 171-391 |
| Cow position: | chr13:44323152-44322925 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 36, 176 |
| Conread position: | 171-529 |
| Cow position: | chr13:4546603-4546250 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 240 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 53, 157 |
| Conread position: | 172-508 |
| Cow position: | chr13:32717623-32717958 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 27, 156 |
| Conread position: | 172-543 |
| Cow position: | chr13:37497510-37497855 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 37 |
| Conread position: | 172-572 |
| Cow position: | chr13:39487096-39487473 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 34 |
| Conread position: | 172-572 |
| Cow position: | chr13:45497015-45497405 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 122 |
| Conread position: | 172-572 |
| Cow position: | chr13:48626993-48626618 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 34 |
| Conread position: | 174-572 |
| Cow position: | chr13:24373650-24373268 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 157 |
| Conread position: | 176-508 |
| Cow position: | chr13:54080560-54080908 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 24, 40 |
| Conread position: | 176-572 |
| Cow position: | chr13:47590897-47591286 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 30 |
| Conread position: | 176-572 |
| Cow position: | chr13:47863455-47863863 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 377 |
| Conread position: | 181-508 |
| Cow position: | chr13:20180636-20180320 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 143, 49 |
| Conread position: | 181-511 |
| Cow position: | chr13:34333713-34334037 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 25 |
| Conread position: | 181-571 |
| Cow position: | chr13:55406426-55406812 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 97 |
| Conread position: | 181-572 |
| Cow position: | chr13:34931072-34931435 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 25 |
| Conread position: | 182-507 |
| Cow position: | chr13:6178108-6178440 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 49, 9 |
| Conread position: | 182-532 |
| Cow position: | chr13:11570925-11570586 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 49, 31 |
| Conread position: | 182-536 |
| Cow position: | chr13:1636239-1635885 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 65 |
| Conread position: | 182-559 |
| Cow position: | chr13:10932790-10932409 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 52, 160 |
| Conread position: | 182-566 |
| Cow position: | chr13:1846123-1845754 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 268 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 46, 7 |
| Conread position: | 183-465 |
| Cow position: | chr13:24404800-24404534 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 186-376 |
| Cow position: | chr13:24369819-24369621 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 25, 164 |
| Conread position: | 192-568 |
| Cow position: | chr13:43384406-43384779 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 136 |
| Conread position: | 193-555 |
| Cow position: | chr13:46458849-46458485 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 130 |
| Conread position: | 207-506 |
| Cow position: | chr13:56842682-56842981 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 214 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 10, 33 |
| Conread position: | 210-431 |
| Cow position: | chr13:18535096-18535324 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 21, 126 |
| Conread position: | 220-571 |
| Cow position: | chr13:1368215-1367863 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 85 |
| Conread position: | 243-455 |
| Cow position: | chr13:42071188-42070976 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 20, 44 |
| Conread position: | 245-526 |
| Cow position: | chr13:25698812-25699095 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 45, 80 |
| Conread position: | 256-572 |
| Cow position: | chr13:12324939-12325258 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 70 |
| Conread position: | 296-511 |
| Cow position: | chr13:46465087-46464870 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 54, 40 |
| Conread position: | 313-507 |
| Cow position: | chr13:30673810-30673613 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 37, 83 |
| Conread position: | 315-572 |
| Cow position: | chr13:8960475-8960228 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 18, 26 |
| Conread position: | 348-572 |
| Cow position: | chr13:25956588-25956368 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 33, 9 |
| Conread position: | 370-571 |
| Cow position: | chr13:46349458-46349654 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 403-513 |
| Cow position: | chr13:47280615-47280505 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 91 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 403-543 |
| Cow position: | chr13:38535399-38535259 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 405-572 |
| Cow position: | chr13:38362293-38362131 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 138, 0 |
Show alignments to all cow chromosomes.