Cow genome map
| Conread name: | rpigcf0_000927.y1 |
| Conread position: | 1-376 |
| Cow position: | chr14:34163413-34163776 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 65 |
| Conread position: | 1-377 |
| Cow position: | chr14:9921526-9921149 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 112, 53 |
| Conread position: | 3-135 |
| Cow position: | chr14:39807014-39807142 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 50, 56 |
| Conread position: | 3-269 |
| Cow position: | chr14:42127699-42127442 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 3-324 |
| Cow position: | chr14:29576589-29576900 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 228 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 208, 43 |
| Conread position: | 3-372 |
| Cow position: | chr14:22909304-22909660 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 52, 21 |
| Conread position: | 3-441 |
| Cow position: | chr14:20746014-20745608 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 301 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 111, 50 |
| Conread position: | 3-572 |
| Cow position: | chr14:10157152-10156600 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 380 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 111, 56 |
| Conread position: | 5-319 |
| Cow position: | chr14:36080233-36080535 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 238 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 105, 54 |
| Conread position: | 5-379 |
| Cow position: | chr14:41128361-41127987 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 278 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 50, 40 |
| Conread position: | 12-538 |
| Cow position: | chr14:40737224-40737727 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 12 |
| Conread position: | 14-167 |
| Cow position: | chr14:24837295-24837446 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 8, 51 |
| Conread position: | 14-510 |
| Cow position: | chr14:6984508-6985000 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 51 |
| Conread position: | 14-534 |
| Cow position: | chr14:47043408-47043929 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 367 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 74, 49 |
| Conread position: | 14-566 |
| Cow position: | chr14:23527395-23526847 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 36 |
| Conread position: | 15-326 |
| Cow position: | chr14:25201662-25201358 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 224 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 99, 15 |
| Conread position: | 15-334 |
| Cow position: | chr14:45192995-45193308 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 221 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 211, 45 |
| Conread position: | 15-351 |
| Cow position: | chr14:18238589-18238265 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 245 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 40, 51 |
| Conread position: | 15-520 |
| Cow position: | chr14:43032270-43031748 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 49 |
| Conread position: | 19-333 |
| Cow position: | chr14:44878331-44878646 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 91, 8 |
| Conread position: | 20-443 |
| Cow position: | chr14:27312869-27312452 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 298 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 35, 44 |
| Conread position: | 29-570 |
| Cow position: | chr14:44772650-44772126 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 23 |
| Conread position: | 72-204 |
| Cow position: | chr14:23050291-23050417 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 74-527 |
| Cow position: | chr14:47974372-47973930 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 305 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 41, 65 |
| Conread position: | 106-539 |
| Cow position: | chr14:23107701-23107257 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 316 |
| Conread position: | 121-508 |
| Cow position: | chr14:26109001-26108596 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 199 |
| Conread position: | 125-543 |
| Cow position: | chr14:23230798-23231207 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 287 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 14, 186 |
| Conread position: | 142-572 |
| Cow position: | chr14:3588117-3588538 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 67 |
| Conread position: | 148-505 |
| Cow position: | chr14:19957581-19957941 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 256 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 83, 95 |
| Conread position: | 159-571 |
| Cow position: | chr14:35604993-35605410 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 264 |
| Conread position: | 164-528 |
| Cow position: | chr14:44482751-44483113 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 160 |
| Conread position: | 165-572 |
| Cow position: | chr14:9254997-9255403 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 41 |
| Conread position: | 165-572 |
| Cow position: | chr14:27578476-27578888 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 48 |
| Conread position: | 168-571 |
| Cow position: | chr14:21863721-21864128 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 38 |
| Conread position: | 169-376 |
| Cow position: | chr14:27848509-27848296 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 68, 181 |
| Conread position: | 170-510 |
| Cow position: | chr14:31785281-31784926 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 233 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 172-572 |
| Cow position: | chr14:12643451-12643853 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 34 |
| Conread position: | 172-572 |
| Cow position: | chr14:23729423-23729811 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 283 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 62, 11 |
| Conread position: | 174-534 |
| Cow position: | chr14:7647734-7648080 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 244 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 33, 117 |
| Conread position: | 175-449 |
| Cow position: | chr14:42260254-42260520 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 52, 153 |
| Conread position: | 175-572 |
| Cow position: | chr14:37983094-37983501 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 49 |
| Conread position: | 176-516 |
| Cow position: | chr14:4991293-4990958 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 73, 58 |
| Conread position: | 176-572 |
| Cow position: | chr14:39616607-39616992 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 285 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 31, 68 |
| Conread position: | 179-505 |
| Cow position: | chr14:26410799-26410472 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 51, 64 |
| Conread position: | 181-536 |
| Cow position: | chr14:46782098-46782459 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 25 |
| Conread position: | 182-521 |
| Cow position: | chr14:47604007-47604348 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 85, 110 |
| Conread position: | 182-567 |
| Cow position: | chr14:18984608-18984987 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 27 |
| Conread position: | 182-572 |
| Cow position: | chr14:45018203-45018596 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 52 |
| Conread position: | 184-539 |
| Cow position: | chr14:22046952-22046596 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 252 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 5, 23 |
| Conread position: | 186-572 |
| Cow position: | chr14:14834835-14835233 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 20 |
| Conread position: | 191-572 |
| Cow position: | chr14:3437277-3436891 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 124 |
| Conread position: | 191-572 |
| Cow position: | chr14:25362638-25362248 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 127 |
| Conread position: | 193-572 |
| Cow position: | chr14:27988932-27988557 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 16 |
| Conread position: | 212-569 |
| Cow position: | chr14:28007874-28007520 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 139 |
| Conread position: | 223-524 |
| Cow position: | chr14:14182593-14182293 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 113, 7 |
| Conread position: | 250-565 |
| Cow position: | chr14:32581157-32581468 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 51 |
| Conread position: | 255-506 |
| Cow position: | chr14:43865712-43865958 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 123, 93 |
| Conread position: | 266-521 |
| Cow position: | chr14:42694136-42693882 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 191 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 84, 55 |
| Conread position: | 282-572 |
| Cow position: | chr14:40244352-40244074 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 5 |
| Conread position: | 314-572 |
| Cow position: | chr14:25993815-25994056 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 38, 78 |
| Conread position: | 321-566 |
| Cow position: | chr14:40165034-40164783 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 12, 83 |
| Conread position: | 327-566 |
| Cow position: | chr14:24396260-24396028 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 24, 82 |
| Conread position: | 403-571 |
| Cow position: | chr14:2298846-2299012 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 407-565 |
| Cow position: | chr14:36108958-36108806 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 61, 53 |
| Conread position: | 412-562 |
| Cow position: | chr14:47880069-47880217 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 412-571 |
| Cow position: | chr14:38000582-38000425 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 413-572 |
| Cow position: | chr14:31810698-31810545 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 50, 111 |
| Conread position: | 422-572 |
| Cow position: | chr14:44886602-44886451 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 82, 124 |
| Conread position: | 424-521 |
| Cow position: | chr14:46306405-46306308 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 81 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 427-572 |
| Cow position: | chr14:41713063-41712920 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 116, 0 |
Show alignments to all cow chromosomes.