Cow genome map


           Conread name:
           rpigcf0_000927.y1
        

               Conread position:
               1-433
               

               Cow position:
               
               

               Alignm length:
               447
               

               Alignm identity:
               307
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               19, 64
               

               Conread position:
               3-178
               

               Cow position:
               
               

               Alignm length:
               179
               

               Alignm identity:
               130
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               107, 50
               

               Conread position:
               3-229
               

               Cow position:
               
               

               Alignm length:
               230
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               50, 61
               

               Conread position:
               3-572
               

               Cow position:
               
               

               Alignm length:
               581
               

               Alignm identity:
               396
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               231, 46
               

               Conread position:
               3-572
               

               Cow position:
               
               

               Alignm length:
               579
               

               Alignm identity:
               433
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 46
               

               Conread position:
               5-357
               

               Cow position:
               
               

               Alignm length:
               363
               

               Alignm identity:
               250
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               50, 59
               

               Conread position:
               6-178
               

               Cow position:
               
               

               Alignm length:
               176
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               104, 41
               

               Conread position:
               12-335
               

               Cow position:
               
               

               Alignm length:
               338
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 43
               

               Conread position:
               14-368
               

               Cow position:
               
               

               Alignm length:
               360
               

               Alignm identity:
               248
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               42, 52
               

               Conread position:
               19-443
               

               Cow position:
               
               

               Alignm length:
               436
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 31
               

               Conread position:
               51-519
               

               Cow position:
               
               

               Alignm length:
               487
               

               Alignm identity:
               319
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               60, 13
               

               Conread position:
               61-376
               

               Cow position:
               
               

               Alignm length:
               329
               

               Alignm identity:
               224
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               49, 78
               

               Conread position:
               71-328
               

               Cow position:
               
               

               Alignm length:
               263
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               42, 48
               

               Conread position:
               71-513
               

               Cow position:
               
               

               Alignm length:
               449
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 101
               

               Conread position:
               72-332
               

               Cow position:
               
               

               Alignm length:
               273
               

               Alignm identity:
               192
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               156, 41
               

               Conread position:
               72-368
               

               Cow position:
               
               

               Alignm length:
               299
               

               Alignm identity:
               205
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               36, 120
               

               Conread position:
               72-458
               

               Cow position:
               
               

               Alignm length:
               400
               

               Alignm identity:
               269
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               38, 127
               

               Conread position:
               73-566
               

               Cow position:
               
               

               Alignm length:
               505
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 39
               

               Conread position:
               74-328
               

               Cow position:
               
               

               Alignm length:
               265
               

               Alignm identity:
               185
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               38, 65
               

               Conread position:
               137-480
               

               Cow position:
               
               

               Alignm length:
               352
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 191
               

               Conread position:
               137-519
               

               Cow position:
               
               

               Alignm length:
               396
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 230
               

               Conread position:
               150-532
               

               Cow position:
               
               

               Alignm length:
               393
               

               Alignm identity:
               255
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               45, 179
               

               Conread position:
               154-515
               

               Cow position:
               
               

               Alignm length:
               370
               

               Alignm identity:
               243
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               76, 54
               

               Conread position:
               161-450
               

               Cow position:
               
               

               Alignm length:
               309
               

               Alignm identity:
               226
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               67, 22
               

               Conread position:
               162-504
               

               Cow position:
               
               

               Alignm length:
               349
               

               Alignm identity:
               245
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               69, 33
               

               Conread position:
               162-529
               

               Cow position:
               
               

               Alignm length:
               379
               

               Alignm identity:
               255
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               69, 193
               

               Conread position:
               164-530
               

               Cow position:
               
               

               Alignm length:
               377
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 27
               

               Conread position:
               164-551
               

               Cow position:
               
               

               Alignm length:
               391
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 42
               

               Conread position:
               164-566
               

               Cow position:
               
               

               Alignm length:
               410
               

               Alignm identity:
               285
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               62, 42
               

               Conread position:
               166-499
               

               Cow position:
               
               

               Alignm length:
               337
               

               Alignm identity:
               232
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               65, 86
               

               Conread position:
               166-562
               

               Cow position:
               
               

               Alignm length:
               404
               

               Alignm identity:
               278
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               61, 24
               

               Conread position:
               167-444
               

               Cow position:
               
               

               Alignm length:
               292
               

               Alignm identity:
               211
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               168-572
               

               Cow position:
               
               

               Alignm length:
               411
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 55
               

               Conread position:
               169-572
               

               Cow position:
               
               

               Alignm length:
               414
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 40
               

               Conread position:
               170-568
               

               Cow position:
               
               

               Alignm length:
               401
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               235, 64
               

               Conread position:
               171-458
               

               Cow position:
               
               

               Alignm length:
               302
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 243
               

               Conread position:
               172-522
               

               Cow position:
               
               

               Alignm length:
               355
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 43
               

               Conread position:
               172-571
               

               Cow position:
               
               

               Alignm length:
               406
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 90
               

               Conread position:
               174-437
               

               Cow position:
               
               

               Alignm length:
               273
               

               Alignm identity:
               177
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               73, 172
               

               Conread position:
               174-503
               

               Cow position:
               
               

               Alignm length:
               347
               

               Alignm identity:
               232
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               57, 153
               

               Conread position:
               176-530
               

               Cow position:
               
               

               Alignm length:
               359
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 160
               

               Conread position:
               181-534
               

               Cow position:
               
               

               Alignm length:
               364
               

               Alignm identity:
               250
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               50, 166
               

               Conread position:
               181-536
               

               Cow position:
               
               

               Alignm length:
               383
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 24
               

               Conread position:
               181-568
               

               Cow position:
               
               

               Alignm length:
               394
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 32
               

               Conread position:
               181-572
               

               Cow position:
               
               

               Alignm length:
               408
               

               Alignm identity:
               273
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               50, 74
               

               Conread position:
               182-515
               

               Cow position:
               
               

               Alignm length:
               345
               

               Alignm identity:
               234
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               49, 124
               

               Conread position:
               182-572
               

               Cow position:
               
               

               Alignm length:
               403
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 147
               

               Conread position:
               183-437
               

               Cow position:
               
               

               Alignm length:
               270
               

               Alignm identity:
               193
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               48, 23
               

               Conread position:
               183-572
               

               Cow position:
               
               

               Alignm length:
               411
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 26
               

               Conread position:
               185-572
               

               Cow position:
               
               

               Alignm length:
               398
               

               Alignm identity:
               275
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               45, 92
               

               Conread position:
               185-572
               

               Cow position:
               
               

               Alignm length:
               406
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               165, 58
               

               Conread position:
               188-551
               

               Cow position:
               
               

               Alignm length:
               371
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 18
               

               Conread position:
               188-572
               

               Cow position:
               
               

               Alignm length:
               393
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 36
               

               Conread position:
               196-567
               

               Cow position:
               
               

               Alignm length:
               398
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 116
               

               Conread position:
               198-529
               

               Cow position:
               
               

               Alignm length:
               337
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 36
               

               Conread position:
               199-543
               

               Cow position:
               
               

               Alignm length:
               360
               

               Alignm identity:
               244
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               32, 289
               

               Conread position:
               201-543
               

               Cow position:
               
               

               Alignm length:
               347
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 124
               

               Conread position:
               203-543
               

               Cow position:
               
               

               Alignm length:
               347
               

               Alignm identity:
               240
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               28, 121
               

               Conread position:
               221-572
               

               Cow position:
               
               

               Alignm length:
               358
               

               Alignm identity:
               254
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               76, 52
               

               Conread position:
               242-572
               

               Cow position:
               
               

               Alignm length:
               342
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 105
               

               Conread position:
               252-497
               

               Cow position:
               
               

               Alignm length:
               263
               

               Alignm identity:
               195
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               101, 74
               

               Conread position:
               257-516
               

               Cow position:
               
               

               Alignm length:
               262
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               14, 36
               

               Conread position:
               263-543
               

               Cow position:
               
               

               Alignm length:
               282
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 117
               

               Conread position:
               269-495
               

               Cow position:
               
               

               Alignm length:
               234
               

               Alignm identity:
               168
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               15, 165
               

               Conread position:
               292-527
               

               Cow position:
               
               

               Alignm length:
               240
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               82, 29
               

               Conread position:
               292-566
               

               Cow position:
               
               

               Alignm length:
               284
               

               Alignm identity:
               201
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               87, 38
               

               Conread position:
               292-566
               

               Cow position:
               
               

               Alignm length:
               279
               

               Alignm identity:
               201
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               89, 42
               

               Conread position:
               293-516
               

               Cow position:
               
               

               Alignm length:
               225
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               97, 52
               

               Conread position:
               306-540
               

               Cow position:
               
               

               Alignm length:
               240
               

               Alignm identity:
               181
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               65, 38
               

               Conread position:
               331-572
               

               Cow position:
               
               

               Alignm length:
               250
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               18, 168
               

               Conread position:
               346-542
               

               Cow position:
               
               

               Alignm length:
               201
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               6, 144
               

               Conread position:
               385-561
               

               Cow position:
               
               

               Alignm length:
               177
               

               Alignm identity:
               127
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               158, 0
               

               Conread position:
               395-562
               

               Cow position:
               
               

               Alignm length:
               168
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               119, 0
               

               Conread position:
               401-572
               

               Cow position:
               
               

               Alignm length:
               173
               

               Alignm identity:
               134
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               151, 107
               

               Conread position:
               402-514
               

               Cow position:
               
               

               Alignm length:
               113
               

               Alignm identity:
               93
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               96, 0
               

               Conread position:
               407-566
               

               Cow position:
               
               

               Alignm length:
               160
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               136, 0
               

               Conread position:
               412-566
               

               Cow position:
               
               

               Alignm length:
               155
               

               Alignm identity:
               111
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               131, 0
               

               Conread position:
               414-572
               

               Cow position:
               
               

               Alignm length:
               159
               

               Alignm identity:
               131
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               131, 0
               
Show alignments to all cow chromosomes.