Cow genome map
| Conread name: | rpigcf0_000927.y1 |
| Conread position: | 1-433 |
| Cow position: | chr15:14322550-14322972 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 307 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 19, 64 |
| Conread position: | 3-178 |
| Cow position: | chr15:3538842-3539014 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 107, 50 |
| Conread position: | 3-229 |
| Cow position: | chr15:5913113-5912903 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 50, 61 |
| Conread position: | 3-572 |
| Cow position: | chr15:11289576-11289024 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 46 |
| Conread position: | 3-572 |
| Cow position: | chr15:21801654-21802219 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 46 |
| Conread position: | 5-357 |
| Cow position: | chr15:31086042-31085699 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 50, 59 |
| Conread position: | 6-178 |
| Cow position: | chr15:16515785-16515954 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 104, 41 |
| Conread position: | 12-335 |
| Cow position: | chr15:19725235-19725563 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 43 |
| Conread position: | 14-368 |
| Cow position: | chr15:9642931-9642586 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 248 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 42, 52 |
| Conread position: | 19-443 |
| Cow position: | chr15:32287255-32287678 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 31 |
| Conread position: | 51-519 |
| Cow position: | chr15:1298217-1297738 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 319 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 60, 13 |
| Conread position: | 61-376 |
| Cow position: | chr15:9062134-9062454 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 49, 78 |
| Conread position: | 71-328 |
| Cow position: | chr15:24098109-24098368 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 42, 48 |
| Conread position: | 71-513 |
| Cow position: | chr15:26754666-26755081 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 101 |
| Conread position: | 72-332 |
| Cow position: | chr15:29004072-29004338 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 192 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 156, 41 |
| Conread position: | 72-368 |
| Cow position: | chr15:24994074-24994363 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 36, 120 |
| Conread position: | 72-458 |
| Cow position: | chr15:36781878-36782264 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 269 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 38, 127 |
| Conread position: | 73-566 |
| Cow position: | chr15:4623915-4623439 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 39 |
| Conread position: | 74-328 |
| Cow position: | chr15:10487449-10487707 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 38, 65 |
| Conread position: | 137-480 |
| Cow position: | chr15:19192557-19192902 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 191 |
| Conread position: | 137-519 |
| Cow position: | chr15:6491202-6491592 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 230 |
| Conread position: | 150-532 |
| Cow position: | chr15:19214400-19214029 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 255 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 45, 179 |
| Conread position: | 154-515 |
| Cow position: | chr15:13691020-13691376 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 243 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 76, 54 |
| Conread position: | 161-450 |
| Cow position: | chr15:36043484-36043181 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 226 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 67, 22 |
| Conread position: | 162-504 |
| Cow position: | chr15:34255386-34255711 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 69, 33 |
| Conread position: | 162-529 |
| Cow position: | chr15:31616642-31617016 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 255 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 69, 193 |
| Conread position: | 164-530 |
| Cow position: | chr15:25825502-25825862 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 27 |
| Conread position: | 164-551 |
| Cow position: | chr15:37985201-37985570 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 42 |
| Conread position: | 164-566 |
| Cow position: | chr15:1670414-1670802 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 285 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 62, 42 |
| Conread position: | 166-499 |
| Cow position: | chr15:34176104-34176428 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 65, 86 |
| Conread position: | 166-562 |
| Cow position: | chr15:6565102-6565478 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 278 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 61, 24 |
| Conread position: | 167-444 |
| Cow position: | chr15:37632518-37632809 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 211 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 168-572 |
| Cow position: | chr15:23265201-23265590 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 55 |
| Conread position: | 169-572 |
| Cow position: | chr15:44797880-44797478 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 40 |
| Conread position: | 170-568 |
| Cow position: | chr15:3832500-3832115 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 64 |
| Conread position: | 171-458 |
| Cow position: | chr15:35041517-35041817 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 243 |
| Conread position: | 172-522 |
| Cow position: | chr15:18715581-18715235 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 43 |
| Conread position: | 172-571 |
| Cow position: | chr15:40065348-40065739 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 90 |
| Conread position: | 174-437 |
| Cow position: | chr15:24044748-24045019 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 73, 172 |
| Conread position: | 174-503 |
| Cow position: | chr15:11675290-11675633 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 57, 153 |
| Conread position: | 176-530 |
| Cow position: | chr15:8629937-8630287 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 160 |
| Conread position: | 181-534 |
| Cow position: | chr15:15215363-15215003 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 250 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 50, 166 |
| Conread position: | 181-536 |
| Cow position: | chr15:36278632-36278258 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 24 |
| Conread position: | 181-568 |
| Cow position: | chr15:52204424-52204803 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 32 |
| Conread position: | 181-572 |
| Cow position: | chr15:27627479-27627880 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 273 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 50, 74 |
| Conread position: | 182-515 |
| Cow position: | chr15:23054596-23054276 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 49, 124 |
| Conread position: | 182-572 |
| Cow position: | chr15:22713488-22713877 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 147 |
| Conread position: | 183-437 |
| Cow position: | chr15:25110824-25111090 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 193 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 48, 23 |
| Conread position: | 183-572 |
| Cow position: | chr15:31918561-31918165 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 26 |
| Conread position: | 185-572 |
| Cow position: | chr15:6523996-6523629 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 275 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 45, 92 |
| Conread position: | 185-572 |
| Cow position: | chr15:9072094-9072498 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 58 |
| Conread position: | 188-551 |
| Cow position: | chr15:5442056-5442415 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 18 |
| Conread position: | 188-572 |
| Cow position: | chr15:10580824-10581208 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 36 |
| Conread position: | 196-567 |
| Cow position: | chr15:52463046-52462657 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 116 |
| Conread position: | 198-529 |
| Cow position: | chr15:3572101-3571769 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 36 |
| Conread position: | 199-543 |
| Cow position: | chr15:31655543-31655901 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 244 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 32, 289 |
| Conread position: | 201-543 |
| Cow position: | chr15:37470519-37470184 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 124 |
| Conread position: | 203-543 |
| Cow position: | chr15:50947172-50946838 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 28, 121 |
| Conread position: | 221-572 |
| Cow position: | chr15:52868300-52868635 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 254 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 76, 52 |
| Conread position: | 242-572 |
| Cow position: | chr15:5912953-5912620 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 105 |
| Conread position: | 252-497 |
| Cow position: | chr15:31934756-31935017 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 101, 74 |
| Conread position: | 257-516 |
| Cow position: | chr15:8413988-8414227 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 14, 36 |
| Conread position: | 263-543 |
| Cow position: | chr15:16946564-16946844 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 117 |
| Conread position: | 269-495 |
| Cow position: | chr15:27972563-27972331 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 15, 165 |
| Conread position: | 292-527 |
| Cow position: | chr15:24864044-24864273 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 82, 29 |
| Conread position: | 292-566 |
| Cow position: | chr15:42679956-42680228 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 87, 38 |
| Conread position: | 292-566 |
| Cow position: | chr15:43275067-43275335 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 89, 42 |
| Conread position: | 293-516 |
| Cow position: | chr15:8062169-8062384 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 97, 52 |
| Conread position: | 306-540 |
| Cow position: | chr15:1893132-1892898 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 181 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 65, 38 |
| Conread position: | 331-572 |
| Cow position: | chr15:53712398-53712644 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 18, 168 |
| Conread position: | 346-542 |
| Cow position: | chr15:50062650-50062849 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 6, 144 |
| Conread position: | 385-561 |
| Cow position: | chr15:9700927-9700753 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 158, 0 |
| Conread position: | 395-562 |
| Cow position: | chr15:14811560-14811401 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 401-572 |
| Cow position: | chr15:37492053-37491889 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 151, 107 |
| Conread position: | 402-514 |
| Cow position: | chr15:53728623-53728514 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 407-566 |
| Cow position: | chr15:39288426-39288269 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 412-566 |
| Cow position: | chr15:49200639-49200791 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 414-572 |
| Cow position: | chr15:25683340-25683496 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 131, 0 |
Show alignments to all cow chromosomes.