Cow genome map
| Conread name: | rpigcf0_000927.y1 |
| Conread position: | 3-178 |
| Cow position: | chr16:36911519-36911348 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 111, 36 |
| Conread position: | 3-319 |
| Cow position: | chr16:47558691-47559005 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 110, 38 |
| Conread position: | 3-396 |
| Cow position: | chr16:28695713-28695351 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 283 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 48, 61 |
| Conread position: | 3-519 |
| Cow position: | chr16:17003330-17003818 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 336 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 228, 47 |
| Conread position: | 5-158 |
| Cow position: | chr16:40271655-40271810 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 47, 7 |
| Conread position: | 5-164 |
| Cow position: | chr16:45654436-45654281 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 50, 59 |
| Conread position: | 5-504 |
| Cow position: | chr16:9235898-9235406 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 59 |
| Conread position: | 6-508 |
| Cow position: | chr16:23024934-23025420 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 58 |
| Conread position: | 12-469 |
| Cow position: | chr16:13601478-13601041 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 313 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 43, 52 |
| Conread position: | 12-500 |
| Cow position: | chr16:17605893-17606369 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 43 |
| Conread position: | 12-571 |
| Cow position: | chr16:50872576-50872026 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 385 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 216, 41 |
| Conread position: | 14-178 |
| Cow position: | chr16:8000593-8000753 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 14-572 |
| Cow position: | chr16:23035716-23035160 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 37 |
| Conread position: | 20-458 |
| Cow position: | chr16:11619343-11619778 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 298 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 90, 7 |
| Conread position: | 30-509 |
| Cow position: | chr16:55579741-55580206 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 316 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 23, 34 |
| Conread position: | 56-458 |
| Cow position: | chr16:46105279-46105674 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 273 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 52, 138 |
| Conread position: | 71-376 |
| Cow position: | chr16:22842412-22842112 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 39, 68 |
| Conread position: | 71-516 |
| Cow position: | chr16:15960658-15960203 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 298 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 41, 79 |
| Conread position: | 71-527 |
| Cow position: | chr16:52218714-52219168 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 317 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 42, 214 |
| Conread position: | 131-572 |
| Cow position: | chr16:52814468-52814037 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 49 |
| Conread position: | 137-551 |
| Cow position: | chr16:12909932-12909522 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 283 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 62, 49 |
| Conread position: | 141-568 |
| Cow position: | chr16:36911325-36910908 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 125 |
| Conread position: | 148-519 |
| Cow position: | chr16:4979529-4979892 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 267 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 78, 61 |
| Conread position: | 152-567 |
| Cow position: | chr16:19445504-19445910 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 32 |
| Conread position: | 152-572 |
| Cow position: | chr16:22786329-22785903 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 56 |
| Conread position: | 162-572 |
| Cow position: | chr16:15508691-15509071 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 74 |
| Conread position: | 167-456 |
| Cow position: | chr16:3633847-3634143 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 60, 108 |
| Conread position: | 167-508 |
| Cow position: | chr16:44116-44452 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 58, 39 |
| Conread position: | 169-572 |
| Cow position: | chr16:43851088-43850689 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 40 |
| Conread position: | 170-514 |
| Cow position: | chr16:54294747-54295079 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 30, 174 |
| Conread position: | 172-527 |
| Cow position: | chr16:18557529-18557166 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 33, 186 |
| Conread position: | 172-543 |
| Cow position: | chr16:5593187-5593547 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 259 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 120, 77 |
| Conread position: | 172-566 |
| Cow position: | chr16:5477610-5477225 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 34 |
| Conread position: | 174-530 |
| Cow position: | chr16:37442389-37442014 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 122 |
| Conread position: | 174-566 |
| Cow position: | chr16:47728762-47729158 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 360 |
| Conread position: | 176-494 |
| Cow position: | chr16:14441632-14441960 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 30 |
| Conread position: | 176-556 |
| Cow position: | chr16:4987689-4988051 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 30 |
| Conread position: | 176-566 |
| Cow position: | chr16:26654927-26655308 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 277 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 55, 30 |
| Conread position: | 177-458 |
| Cow position: | chr16:15677299-15677594 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 214 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 51, 211 |
| Conread position: | 181-503 |
| Cow position: | chr16:42709392-42709080 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 27, 130 |
| Conread position: | 181-504 |
| Cow position: | chr16:4443552-4443907 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 247 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 49, 301 |
| Conread position: | 181-543 |
| Cow position: | chr16:19633027-19632659 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 177 |
| Conread position: | 181-572 |
| Cow position: | chr16:14799994-14799606 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 28 |
| Conread position: | 182-572 |
| Cow position: | chr16:17867728-17867345 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 207 |
| Conread position: | 183-458 |
| Cow position: | chr16:56082613-56082336 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 14, 129 |
| Conread position: | 183-572 |
| Cow position: | chr16:19152445-19152841 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 202 |
| Conread position: | 188-520 |
| Cow position: | chr16:52577212-52577548 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 46, 144 |
| Conread position: | 191-485 |
| Cow position: | chr16:46524478-46524199 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 13, 86 |
| Conread position: | 191-540 |
| Cow position: | chr16:16056282-16055950 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 238 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 47, 57 |
| Conread position: | 191-543 |
| Cow position: | chr16:53547832-53547476 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 196 |
| Conread position: | 194-572 |
| Cow position: | chr16:12243796-12243423 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 135 |
| Conread position: | 209-515 |
| Cow position: | chr16:6265221-6264923 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 216 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 25, 114 |
| Conread position: | 210-532 |
| Cow position: | chr16:341045-341367 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 238 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 34, 119 |
| Conread position: | 227-467 |
| Cow position: | chr16:52487704-52487935 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 22, 13 |
| Conread position: | 230-566 |
| Cow position: | chr16:6309628-6309953 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 247 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 42, 88 |
| Conread position: | 245-572 |
| Cow position: | chr16:41680954-41680628 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 176 |
| Conread position: | 246-442 |
| Cow position: | chr16:25928388-25928186 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 26, 80 |
| Conread position: | 247-572 |
| Cow position: | chr16:15734393-15734712 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 20 |
| Conread position: | 248-526 |
| Cow position: | chr16:47385246-47384966 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 54, 123 |
| Conread position: | 252-527 |
| Cow position: | chr16:45692961-45693243 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 20, 235 |
| Conread position: | 255-559 |
| Cow position: | chr16:5132062-5131753 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 215 |
| Conread position: | 272-523 |
| Cow position: | chr16:8674035-8674283 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 91, 66 |
| Conread position: | 292-572 |
| Cow position: | chr16:4676874-4677165 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 203 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 34, 114 |
| Conread position: | 296-524 |
| Cow position: | chr16:49511447-49511680 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 91, 41 |
| Conread position: | 305-572 |
| Cow position: | chr16:55775289-55775553 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 76, 25 |
| Conread position: | 315-572 |
| Cow position: | chr16:13043711-13043961 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 48, 39 |
| Conread position: | 321-572 |
| Cow position: | chr16:30053580-30053830 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 53, 19 |
| Conread position: | 331-543 |
| Cow position: | chr16:4825963-4825754 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 19, 154 |
| Conread position: | 343-567 |
| Cow position: | chr16:29205130-29204905 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 7, 77 |
| Conread position: | 345-570 |
| Cow position: | chr16:45551748-45551971 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 32, 169 |
| Conread position: | 380-526 |
| Cow position: | chr16:23163622-23163479 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 402-571 |
| Cow position: | chr16:47781269-47781434 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 11, 106 |
| Conread position: | 410-566 |
| Cow position: | chr16:55674685-55674537 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 412-543 |
| Cow position: | chr16:52900906-52900776 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 417-572 |
| Cow position: | chr16:4295539-4295386 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 12, 22 |
| Conread position: | 425-572 |
| Cow position: | chr16:4856492-4856353 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 18, 60 |
| Conread position: | 431-572 |
| Cow position: | chr16:16559017-16558879 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 447-572 |
| Cow position: | chr16:20857377-20857500 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 96 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 464-572 |
| Cow position: | chr16:16118490-16118596 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 90 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 79, 0 |
Show alignments to all cow chromosomes.