Cow genome map
| Conread name: | rpigcf0_000927.y1 |
| Conread position: | 1-441 |
| Cow position: | chr18:40892833-40893255 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 295 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 54, 65 |
| Conread position: | 3-405 |
| Cow position: | chr18:45577063-45576666 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 9 |
| Conread position: | 3-572 |
| Cow position: | chr18:16258389-16258965 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 50 |
| Conread position: | 4-540 |
| Cow position: | chr18:11368214-11367675 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 46 |
| Conread position: | 5-376 |
| Cow position: | chr18:51538116-51537748 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 258 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 50, 59 |
| Conread position: | 14-521 |
| Cow position: | chr18:4578920-4578429 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 36 |
| Conread position: | 16-572 |
| Cow position: | chr18:29224224-29224802 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 46 |
| Conread position: | 19-539 |
| Cow position: | chr18:9805961-9806496 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 22 |
| Conread position: | 20-540 |
| Cow position: | chr18:10101044-10101565 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 27 |
| Conread position: | 61-374 |
| Cow position: | chr18:45572698-45573024 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 49, 11 |
| Conread position: | 71-224 |
| Cow position: | chr18:10115062-10115212 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 42, 68 |
| Conread position: | 71-324 |
| Cow position: | chr18:48392460-48392721 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 39, 107 |
| Conread position: | 71-379 |
| Cow position: | chr18:11680315-11680641 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 287 |
| Conread position: | 71-521 |
| Cow position: | chr18:25971029-25970577 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 305 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 42, 71 |
| Conread position: | 72-471 |
| Cow position: | chr18:36477778-36478211 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 264 |
| Conread position: | 108-572 |
| Cow position: | chr18:8169808-8170286 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 28 |
| Conread position: | 137-479 |
| Cow position: | chr18:329604-329257 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 32, 110 |
| Conread position: | 137-506 |
| Cow position: | chr18:42060746-42061120 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 218 |
| Conread position: | 168-372 |
| Cow position: | chr18:48407490-48407701 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 59, 181 |
| Conread position: | 168-458 |
| Cow position: | chr18:40694677-40694961 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 66, 77 |
| Conread position: | 168-509 |
| Cow position: | chr18:25003176-25002842 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 32, 110 |
| Conread position: | 170-507 |
| Cow position: | chr18:34052284-34051946 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 36 |
| Conread position: | 170-532 |
| Cow position: | chr18:22065660-22065277 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 44 |
| Conread position: | 172-561 |
| Cow position: | chr18:31997186-31997548 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 266 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 59, 85 |
| Conread position: | 174-571 |
| Cow position: | chr18:32860355-32860759 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 32 |
| Conread position: | 174-572 |
| Cow position: | chr18:23317396-23317002 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 97 |
| Conread position: | 176-439 |
| Cow position: | chr18:42455311-42455051 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 174, 51 |
| Conread position: | 176-517 |
| Cow position: | chr18:37334822-37335159 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 241 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 55, 30 |
| Conread position: | 181-497 |
| Cow position: | chr18:32281005-32281296 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 18, 109 |
| Conread position: | 182-506 |
| Cow position: | chr18:54166390-54166066 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 47, 24 |
| Conread position: | 182-572 |
| Cow position: | chr18:28085290-28085679 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 36 |
| Conread position: | 183-480 |
| Cow position: | chr18:23652897-23652603 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 43, 21 |
| Conread position: | 183-531 |
| Cow position: | chr18:35472221-35471860 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 304 |
| Conread position: | 183-543 |
| Cow position: | chr18:48549707-48550069 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 257 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 7, 147 |
| Conread position: | 188-522 |
| Cow position: | chr18:22434208-22433872 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 74 |
| Conread position: | 191-515 |
| Cow position: | chr18:17228243-17227913 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 43, 18 |
| Conread position: | 200-566 |
| Cow position: | chr18:36187799-36187442 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 42, 34 |
| Conread position: | 210-572 |
| Cow position: | chr18:54031449-54031808 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 130 |
| Conread position: | 227-507 |
| Cow position: | chr18:34021153-34021433 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 118 |
| Conread position: | 227-540 |
| Cow position: | chr18:29474246-29474546 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 210 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 154, 55 |
| Conread position: | 248-556 |
| Cow position: | chr18:54275315-54275621 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 218 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 38, 95 |
| Conread position: | 279-543 |
| Cow position: | chr18:9078379-9078121 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 102, 21 |
| Conread position: | 314-572 |
| Cow position: | chr18:21291162-21290899 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 189 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 40, 63 |
| Conread position: | 315-572 |
| Cow position: | chr18:23669420-23669160 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 233 |
| Conread position: | 356-572 |
| Cow position: | chr18:31393487-31393697 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 114, 52 |
| Conread position: | 360-527 |
| Cow position: | chr18:213642-213473 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 25, 44 |
| Conread position: | 361-560 |
| Cow position: | chr18:25847106-25846909 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 19, 33 |
| Conread position: | 399-522 |
| Cow position: | chr18:1062070-1061946 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 399-572 |
| Cow position: | chr18:39475318-39475152 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 5, 73 |
Show alignments to all cow chromosomes.