Cow genome map

Conread name: rpigcf0_000927.y1

Conread position: 1-351
Cow position: chr19:23399197-23398852 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 262
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 110, 48

Conread position: 1-530
Cow position: chr19:19241660-19242185 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 227, 58

Conread position: 3-135
Cow position: chr19:33593598-33593469 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 106
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 92, 47

Conread position: 3-148
Cow position: chr19:38983596-38983737 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 50, 61

Conread position: 3-166
Cow position: chr19:38545287-38545446 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 122
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 110, 51

Conread position: 3-248
Cow position: chr19:14104019-14104252 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 176
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 46, 22

Conread position: 3-372
Cow position: chr19:38396699-38396347 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 257
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 111, 50

Conread position: 5-229
Cow position: chr19:15495215-15494983 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 172
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 108, 25

Conread position: 5-319
Cow position: chr19:34985999-34986319 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 239
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 105, 54

Conread position: 5-505
Cow position: chr19:4502789-4503285 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 328
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 220, 59

Conread position: 5-508
Cow position: chr19:5649096-5648596 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 51

Conread position: 5-568
Cow position: chr19:42706782-42706246 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 44

Conread position: 6-325
Cow position: chr19:55647208-55646902 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 225
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 225, 23

Conread position: 15-270
Cow position: chr19:46873097-46872850 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 182
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 19, 50

Conread position: 16-524
Cow position: chr19:43417979-43418491 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 362
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 34, 50

Conread position: 19-334
Cow position: chr19:22423406-22423090 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 225
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 36, 45

Conread position: 19-527
Cow position: chr19:36844826-36845335 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 338
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 91, 35

Conread position: 20-319
Cow position: chr19:52305318-52305028 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 34

Conread position: 21-508
Cow position: chr19:19925037-19924534 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 20

Conread position: 71-324
Cow position: chr19:40250644-40250895 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 184
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 155, 42

Conread position: 71-333
Cow position: chr19:55210830-55210576 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 190
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 43, 69

Conread position: 71-351
Cow position: chr19:42215726-42216015 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 198
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 42, 164

Conread position: 71-519
Cow position: chr19:43733387-43733811 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 301
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 42, 68

Conread position: 71-527
Cow position: chr19:19246426-19246860 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 310
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 44, 58

Conread position: 80-325
Cow position: chr19:28912507-28912765 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 183
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 40, 0

Conread position: 89-566
Cow position: chr19:42092571-42092097 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 331
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 25, 247

Conread position: 155-572
Cow position: chr19:33285556-33285173 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 281
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 95, 0

Conread position: 158-485
Cow position: chr19:47109755-47110085 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 239
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 73, 51

Conread position: 165-572
Cow position: chr19:426520-426139 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 26

Conread position: 167-556
Cow position: chr19:3084486-3084092 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 39

Conread position: 168-508
Cow position: chr19:36461804-36461461 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 40

Conread position: 168-526
Cow position: chr19:15711773-15712109 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 237
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 237, 41

Conread position: 168-543
Cow position: chr19:42465766-42465404 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 175

Conread position: 170-542
Cow position: chr19:38545721-38546082 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 247
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 13, 40

Conread position: 170-566
Cow position: chr19:31396166-31395775 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 36

Conread position: 172-566
Cow position: chr19:25048876-25048504 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 277
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 39, 130

Conread position: 172-572
Cow position: chr19:20699815-20700211 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 155

Conread position: 174-572
Cow position: chr19:40714888-40715269 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 280
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 57, 35

Conread position: 176-572
Cow position: chr19:30746132-30746537 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 30

Conread position: 181-504
Cow position: chr19:35782397-35782078 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 233
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 46, 34

Conread position: 181-506
Cow position: chr19:4599818-4600129 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 68

Conread position: 184-572
Cow position: chr19:36478633-36479025 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 143

Conread position: 193-572
Cow position: chr19:4609619-4609989 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 145

Conread position: 197-448
Cow position: chr19:30276697-30276942 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 185
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 34, 61

Conread position: 197-522
Cow position: chr19:30052249-30051912 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 78

Conread position: 206-562
Cow position: chr19:28326669-28326313 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 254
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 16, 50

Conread position: 210-572
Cow position: chr19:28800361-28800008 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 120

Conread position: 230-521
Cow position: chr19:20292300-20292012 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 193
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 137, 0

Conread position: 248-572
Cow position: chr19:3081902-3082208 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 241
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 21, 27

Conread position: 252-570
Cow position: chr19:30452965-30452641 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 61

Conread position: 292-572
Cow position: chr19:3585370-3585098 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 205
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 92, 45

Conread position: 325-572
Cow position: chr19:14534765-14534518 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 183
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 7, 123

Conread position: 346-571
Cow position: chr19:39250174-39250393 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 165
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 36, 7

Conread position: 385-566
Cow position: chr19:31287223-31287048 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 9, 0

Conread position: 395-511
Cow position: chr19:15039736-15039619 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 99, 0

Conread position: 401-568
Cow position: chr19:22993901-22994067 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 121
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 19, 143

Conread position: 421-572
Cow position: chr19:38396080-38395933 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 122
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 39, 0

Show alignments to all cow chromosomes.