Cow genome map

Conread name: rpigcf0_000927.y1

Conread position: 3-272
Cow position: chr2:55470506-55470251 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 186
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 36, 21

Conread position: 3-354
Cow position: chr2:31264908-31264565 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 50

Conread position: 3-458
Cow position: chr2:6820725-6820269 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 320
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 50, 61

Conread position: 3-566
Cow position: chr2:30388981-30389508 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 56

Conread position: 3-568
Cow position: chr2:42897556-42896995 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 61

Conread position: 4-572
Cow position: chr2:53717406-53716840 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 50

Conread position: 5-333
Cow position: chr2:29802533-29802210 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 234
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 109, 54

Conread position: 5-379
Cow position: chr2:6720428-6720799 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 59

Conread position: 5-513
Cow position: chr2:50606112-50606622 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 59

Conread position: 5-521
Cow position: chr2:53497295-53496821 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 343
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 105, 46

Conread position: 5-527
Cow position: chr2:38376485-38376999 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 350
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 15, 56

Conread position: 6-332
Cow position: chr2:34646757-34647074 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 226
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 49, 58

Conread position: 6-420
Cow position: chr2:14349373-14349775 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 280
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 49, 58

Conread position: 12-178
Cow position: chr2:50561880-50562041 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 129
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 37, 50

Conread position: 12-458
Cow position: chr2:469251-469677 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 305
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 188, 47

Conread position: 19-300
Cow position: chr2:39831809-39832094 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 203
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 34, 47

Conread position: 20-369
Cow position: chr2:41157546-41157906 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 245
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 90, 34

Conread position: 54-410
Cow position: chr2:32408871-32408509 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 253
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 59, 177

Conread position: 61-525
Cow position: chr2:71495015-71495493 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 68

Conread position: 64-529
Cow position: chr2:35359439-35359896 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 80

Conread position: 71-379
Cow position: chr2:70746436-70746748 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 214
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 39, 68

Conread position: 71-458
Cow position: chr2:45469656-45470036 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 278
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 154, 36

Conread position: 71-458
Cow position: chr2:53000163-53000543 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 278
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 43, 18

Conread position: 82-376
Cow position: chr2:7534110-7533822 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 208
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 32, 57

Conread position: 137-527
Cow position: chr2:42309852-42309458 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 281
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 45, 98

Conread position: 158-534
Cow position: chr2:29382949-29382575 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 256
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 114, 57

Conread position: 164-511
Cow position: chr2:14465821-14465476 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 61

Conread position: 164-566
Cow position: chr2:22035381-22035764 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 274
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 67, 23

Conread position: 166-572
Cow position: chr2:6292375-6292771 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 14

Conread position: 168-503
Cow position: chr2:44170290-44170634 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 219
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 66, 181

Conread position: 169-372
Cow position: chr2:45575261-45575053 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 148
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 62, 180

Conread position: 172-507
Cow position: chr2:3295388-3295733 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 90

Conread position: 172-572
Cow position: chr2:27318599-27318995 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 282
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 29, 162

Conread position: 173-572
Cow position: chr2:33826186-33825793 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 274
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 34, 59

Conread position: 174-481
Cow position: chr2:46271754-46271446 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 212
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 54, 138

Conread position: 174-566
Cow position: chr2:10295842-10296230 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 109

Conread position: 174-571
Cow position: chr2:72598544-72598946 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 101

Conread position: 175-572
Cow position: chr2:19749354-19749746 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 54

Conread position: 176-543
Cow position: chr2:2375-2015 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 30

Conread position: 176-562
Cow position: chr2:31910282-31909896 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 172

Conread position: 176-572
Cow position: chr2:2721878-2722245 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 265
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 41, 47

Conread position: 176-572
Cow position: chr2:63288407-63288011 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 30

Conread position: 180-572
Cow position: chr2:50379347-50379747 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 285
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 51, 200

Conread position: 181-510
Cow position: chr2:82311459-82311117 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 230
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 50, 244

Conread position: 181-515
Cow position: chr2:79075954-79075626 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 10

Conread position: 181-534
Cow position: chr2:425569-425918 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 244
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 45, 12

Conread position: 181-539
Cow position: chr2:54890068-54890428 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 143

Conread position: 181-543
Cow position: chr2:27145617-27145253 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 159

Conread position: 181-543
Cow position: chr2:71120786-71121139 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 25

Conread position: 181-566
Cow position: chr2:21704163-21703791 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 264
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 50, 25

Conread position: 181-572
Cow position: chr2:908191-908559 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 270
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 91, 28

Conread position: 182-515
Cow position: chr2:16123341-16123018 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 224
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 29, 62

Conread position: 183-424
Cow position: chr2:42643345-42643098 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 178
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 48, 30

Conread position: 183-534
Cow position: chr2:47744732-47745095 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 254
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 47, 23

Conread position: 184-499
Cow position: chr2:9043265-9043563 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 217
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 24, 87

Conread position: 184-571
Cow position: chr2:42925054-42925434 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 255
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 47, 33

Conread position: 185-572
Cow position: chr2:20301734-20302089 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 9

Conread position: 188-525
Cow position: chr2:15769736-15769411 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 242
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 12, 162

Conread position: 191-572
Cow position: chr2:35304525-35304905 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 150

Conread position: 193-527
Cow position: chr2:14219350-14219673 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 222
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 156, 13

Conread position: 195-505
Cow position: chr2:62563930-62563612 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 227
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 31, 11

Conread position: 195-513
Cow position: chr2:25056711-25057022 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 230
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 26, 128

Conread position: 198-572
Cow position: chr2:62674473-62674098 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 17

Conread position: 199-529
Cow position: chr2:50419053-50419382 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 215
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 29, 58

Conread position: 200-536
Cow position: chr2:32393184-32393520 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 42

Conread position: 207-572
Cow position: chr2:18250123-18249742 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 177

Conread position: 209-534
Cow position: chr2:70663788-70664121 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 228
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 22, 301

Conread position: 225-507
Cow position: chr2:37787371-37787076 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 212
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 24, 125

Conread position: 227-522
Cow position: chr2:31489881-31490156 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 198
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 213, 58

Conread position: 228-556
Cow position: chr2:39786820-39787149 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 221
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 113, 12

Conread position: 230-568
Cow position: chr2:24883751-24884092 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 245
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 17, 311

Conread position: 244-527
Cow position: chr2:57293466-57293183 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 196
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 5, 169

Conread position: 245-567
Cow position: chr2:65749479-65749790 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 99

Conread position: 246-572
Cow position: chr2:33791670-33791339 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 78

Conread position: 252-572
Cow position: chr2:46141325-46141025 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 0

Conread position: 263-572
Cow position: chr2:85055842-85056139 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 220
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 147, 76

Conread position: 269-556
Cow position: chr2:31419846-31420132 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 206
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 15, 208

Conread position: 270-572
Cow position: chr2:73615248-73614935 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 222
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 56, 70

Conread position: 293-572
Cow position: chr2:43345420-43345151 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 9

Conread position: 306-572
Cow position: chr2:74388241-74387988 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 199
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 39, 60

Conread position: 311-534
Cow position: chr2:77033559-77033787 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 157
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 39, 226

Conread position: 314-551
Cow position: chr2:52462365-52462137 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 169
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 36, 81

Conread position: 322-528
Cow position: chr2:15105502-15105711 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 151
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 17, 42

Conread position: 348-566
Cow position: chr2:39508383-39508604 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 158
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 29, 86

Conread position: 348-567
Cow position: chr2:21697816-21697596 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 160
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 29, 77

Conread position: 358-564
Cow position: chr2:50017650-50017449 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 154
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 29, 103

Conread position: 360-572
Cow position: chr2:77968568-77968361 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 161
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 27, 37

Conread position: 376-566
Cow position: chr2:11467695-11467512 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 134
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 36, 0

Conread position: 376-570
Cow position: chr2:51827710-51827521 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 142
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 42, 133

Conread position: 380-572
Cow position: chr2:69982368-69982553 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 148
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 23, 139

Conread position: 395-572
Cow position: chr2:64073514-64073686 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 139
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 89, 128

Conread position: 400-566
Cow position: chr2:6334165-6333999 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 122
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 16, 151

Conread position: 404-572
Cow position: chr2:41490622-41490786 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 138
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 92, 0

Conread position: 412-530
Cow position: chr2:3182647-3182529 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 99
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 416-567
Cow position: chr2:70837808-70837655 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 126, 0

Conread position: 426-566
Cow position: chr2:35447871-35447733 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 106
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 117, 0

Conread position: 427-568
Cow position: chr2:66435283-66435421 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 119
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 20, 0

Conread position: 434-572
Cow position: chr2:76055551-76055417 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 111
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 61, 0

Show alignments to all cow chromosomes.