Cow genome map
| Conread name: | rpigcf0_000927.y1 |
| Conread position: | 1-572 |
| Cow position: | chr20:27978092-27977526 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 49 |
| Conread position: | 3-324 |
| Cow position: | chr20:19667581-19667900 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 231, 47 |
| Conread position: | 4-572 |
| Cow position: | chr20:25293206-25293779 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 56 |
| Conread position: | 5-358 |
| Cow position: | chr20:4672571-4672918 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 50, 59 |
| Conread position: | 5-458 |
| Cow position: | chr20:14735301-14735740 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 58 |
| Conread position: | 5-535 |
| Cow position: | chr20:13465140-13465653 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 61 |
| Conread position: | 7-482 |
| Cow position: | chr20:10850871-10850426 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 329 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 48, 7 |
| Conread position: | 15-571 |
| Cow position: | chr20:31564328-31563791 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 44 |
| Conread position: | 19-534 |
| Cow position: | chr20:10759833-10759326 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 45 |
| Conread position: | 20-376 |
| Cow position: | chr20:12420983-12420630 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 257 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 33, 44 |
| Conread position: | 20-379 |
| Cow position: | chr20:7442498-7442135 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 122 |
| Conread position: | 27-521 |
| Cow position: | chr20:5576422-5576909 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 336 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 27, 37 |
| Conread position: | 61-315 |
| Cow position: | chr20:5408090-5407828 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 196 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 42, 146 |
| Conread position: | 71-383 |
| Cow position: | chr20:15078959-15078638 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 38, 63 |
| Conread position: | 73-527 |
| Cow position: | chr20:39405448-39405900 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 66 |
| Conread position: | 89-572 |
| Cow position: | chr20:4359967-4359498 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 342 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 16, 135 |
| Conread position: | 94-566 |
| Cow position: | chr20:20557961-20557460 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 292 |
| Conread position: | 137-520 |
| Cow position: | chr20:20471534-20471917 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 102 |
| Conread position: | 154-484 |
| Cow position: | chr20:15148251-15147918 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 171 |
| Conread position: | 158-572 |
| Cow position: | chr20:35897284-35897705 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 393 |
| Conread position: | 165-376 |
| Cow position: | chr20:18618412-18618623 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 66, 41 |
| Conread position: | 166-514 |
| Cow position: | chr20:8869501-8869157 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 19, 14 |
| Conread position: | 166-571 |
| Cow position: | chr20:12808772-12809182 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 14 |
| Conread position: | 167-572 |
| Cow position: | chr20:22920385-22919990 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 81 |
| Conread position: | 168-381 |
| Cow position: | chr20:34202423-34202644 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 81, 63 |
| Conread position: | 168-571 |
| Cow position: | chr20:19238654-19238250 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 15 |
| Conread position: | 168-572 |
| Cow position: | chr20:32153287-32153691 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 28 |
| Conread position: | 169-550 |
| Cow position: | chr20:3426934-3427291 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 113 |
| Conread position: | 170-537 |
| Cow position: | chr20:32578142-32577771 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 74 |
| Conread position: | 170-571 |
| Cow position: | chr20:17831624-17832006 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 50 |
| Conread position: | 170-572 |
| Cow position: | chr20:27843429-27843831 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 187 |
| Conread position: | 172-534 |
| Cow position: | chr20:17669962-17670329 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 185 |
| Conread position: | 172-566 |
| Cow position: | chr20:13821802-13821402 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 42 |
| Conread position: | 174-443 |
| Cow position: | chr20:19363580-19363306 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 54, 81 |
| Conread position: | 180-510 |
| Cow position: | chr20:7600989-7600657 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 19 |
| Conread position: | 181-508 |
| Cow position: | chr20:38123676-38124009 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 223 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 50, 28 |
| Conread position: | 181-530 |
| Cow position: | chr20:7803358-7803020 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 25 |
| Conread position: | 183-568 |
| Cow position: | chr20:7539442-7539043 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 235 |
| Conread position: | 185-572 |
| Cow position: | chr20:20351196-20350807 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 222 |
| Conread position: | 189-530 |
| Cow position: | chr20:10687574-10687906 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 40, 155 |
| Conread position: | 227-507 |
| Cow position: | chr20:2608661-2608932 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 68, 9 |
| Conread position: | 236-545 |
| Cow position: | chr20:2683379-2683680 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 239-572 |
| Cow position: | chr20:35384602-35384922 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 50, 92 |
| Conread position: | 248-534 |
| Cow position: | chr20:8261766-8262062 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 201 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 24, 102 |
| Conread position: | 252-533 |
| Cow position: | chr20:16585775-16585485 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 218 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 20, 154 |
| Conread position: | 254-572 |
| Cow position: | chr20:17474922-17474601 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 54 |
| Conread position: | 255-572 |
| Cow position: | chr20:26084109-26083800 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 14 |
| Conread position: | 264-572 |
| Cow position: | chr20:13658967-13658662 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 225 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 113, 80 |
| Conread position: | 369-572 |
| Cow position: | chr20:23422410-23422217 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 400-567 |
| Cow position: | chr20:12122051-12121890 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 403-536 |
| Cow position: | chr20:35693710-35693843 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 6, 59 |
| Conread position: | 404-570 |
| Cow position: | chr20:24279987-24280153 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 90, 141 |
| Conread position: | 409-572 |
| Cow position: | chr20:4851182-4851339 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 412-572 |
| Cow position: | chr20:35249563-35249407 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 86, 31 |
| Conread position: | 413-538 |
| Cow position: | chr20:2858370-2858495 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 420-536 |
| Cow position: | chr20:18828970-18829084 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 92 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 429-572 |
| Cow position: | chr20:4615760-4615620 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 102, 0 |
Show alignments to all cow chromosomes.