Cow genome map
| Conread name: | rpigcf0_000927.y1 |
| Conread position: | 3-319 |
| Cow position: | chr21:24674405-24674704 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 52, 61 |
| Conread position: | 4-318 |
| Cow position: | chr21:38908204-38908523 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 236 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 133, 49 |
| Conread position: | 5-221 |
| Cow position: | chr21:31661724-31661932 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 108, 7 |
| Conread position: | 5-377 |
| Cow position: | chr21:21000389-21000027 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 44 |
| Conread position: | 12-167 |
| Cow position: | chr21:38628047-38628201 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 38, 52 |
| Conread position: | 13-229 |
| Cow position: | chr21:29785820-29786039 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 43, 53 |
| Conread position: | 18-443 |
| Cow position: | chr21:2786119-2785699 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 287 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 15, 42 |
| Conread position: | 19-508 |
| Cow position: | chr21:35061743-35062225 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 45 |
| Conread position: | 20-443 |
| Cow position: | chr21:3047340-3047754 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 35 |
| Conread position: | 20-461 |
| Cow position: | chr21:6051159-6051596 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 300 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 88, 39 |
| Conread position: | 29-566 |
| Cow position: | chr21:4276921-4276401 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 34 |
| Conread position: | 61-196 |
| Cow position: | chr21:10045947-10046091 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 74-571 |
| Cow position: | chr21:22722783-22722256 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 343 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 40, 141 |
| Conread position: | 125-571 |
| Cow position: | chr21:45447329-45447792 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 316 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 75, 12 |
| Conread position: | 146-543 |
| Cow position: | chr21:26614882-26614484 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 63 |
| Conread position: | 152-431 |
| Cow position: | chr21:29248063-29247794 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 79, 57 |
| Conread position: | 159-534 |
| Cow position: | chr21:26742798-26742436 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 12 |
| Conread position: | 162-572 |
| Cow position: | chr21:6619185-6618791 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 37 |
| Conread position: | 165-534 |
| Cow position: | chr21:23785824-23786198 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 45 |
| Conread position: | 165-566 |
| Cow position: | chr21:38482721-38483116 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 284 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 73, 44 |
| Conread position: | 166-572 |
| Cow position: | chr21:1991105-1991483 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 168-515 |
| Cow position: | chr21:20575662-20575326 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 228 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 219, 26 |
| Conread position: | 168-571 |
| Cow position: | chr21:16166836-16166439 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 95 |
| Conread position: | 170-526 |
| Cow position: | chr21:23500022-23499668 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 37 |
| Conread position: | 170-526 |
| Cow position: | chr21:31662259-31662627 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 61, 150 |
| Conread position: | 171-494 |
| Cow position: | chr21:37322490-37322180 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 235 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 53, 38 |
| Conread position: | 174-566 |
| Cow position: | chr21:30897222-30897608 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 32 |
| Conread position: | 174-572 |
| Cow position: | chr21:24945093-24944691 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 108 |
| Conread position: | 176-515 |
| Cow position: | chr21:3921138-3920817 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 55, 23 |
| Conread position: | 176-567 |
| Cow position: | chr21:5596951-5597352 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 179 |
| Conread position: | 181-484 |
| Cow position: | chr21:25286319-25286635 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 25, 35 |
| Conread position: | 181-534 |
| Cow position: | chr21:24698299-24698647 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 240 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 22, 142 |
| Conread position: | 181-542 |
| Cow position: | chr21:26097600-26097229 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 46, 25 |
| Conread position: | 181-566 |
| Cow position: | chr21:44804451-44804065 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 274 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 26, 111 |
| Conread position: | 181-570 |
| Cow position: | chr21:39765659-39766029 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 274 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 47, 105 |
| Conread position: | 181-572 |
| Cow position: | chr21:37282119-37282503 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 165 |
| Conread position: | 181-572 |
| Cow position: | chr21:37941877-37941481 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 171 |
| Conread position: | 184-572 |
| Cow position: | chr21:39075896-39075506 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 22 |
| Conread position: | 191-507 |
| Cow position: | chr21:30192366-30192034 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 197-534 |
| Cow position: | chr21:27344577-27344239 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 128 |
| Conread position: | 210-567 |
| Cow position: | chr21:16981722-16982083 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 68 |
| Conread position: | 233-566 |
| Cow position: | chr21:33391927-33392257 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 102 |
| Conread position: | 254-568 |
| Cow position: | chr21:37355567-37355879 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 17, 92 |
| Conread position: | 257-535 |
| Cow position: | chr21:34141300-34141001 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 226 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 15, 69 |
| Conread position: | 266-448 |
| Cow position: | chr21:17672741-17672564 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 113, 55 |
| Conread position: | 266-525 |
| Cow position: | chr21:32904257-32903996 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 84, 54 |
| Conread position: | 292-572 |
| Cow position: | chr21:33292636-33292919 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 29 |
| Conread position: | 295-534 |
| Cow position: | chr21:31661932-31662170 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 79, 108 |
| Conread position: | 318-539 |
| Cow position: | chr21:8273608-8273394 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 337-545 |
| Cow position: | chr21:31597125-31597335 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 44, 11 |
| Conread position: | 359-566 |
| Cow position: | chr21:26522624-26522820 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 48, 14 |
| Conread position: | 376-572 |
| Cow position: | chr21:9040878-9041070 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 395-572 |
| Cow position: | chr21:15543921-15543750 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 11, 43 |
| Conread position: | 400-572 |
| Cow position: | chr21:23398990-23399158 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 405-533 |
| Cow position: | chr21:41041452-41041580 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 406-572 |
| Cow position: | chr21:24972565-24972403 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 407-572 |
| Cow position: | chr21:25018908-25019067 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 409-572 |
| Cow position: | chr21:33974538-33974695 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 426-525 |
| Cow position: | chr21:47165657-47165559 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 85 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 427-572 |
| Cow position: | chr21:17672271-17672129 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 134, 45 |
| Conread position: | 436-572 |
| Cow position: | chr21:12077420-12077553 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 84, 0 |
Show alignments to all cow chromosomes.