Cow genome map
| Conread name: | rpigcf0_000927.y1 |
| Conread position: | 1-445 |
| Cow position: | chr22:34886227-34886660 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 52 |
| Conread position: | 3-404 |
| Cow position: | chr22:3837646-3837258 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 47 |
| Conread position: | 3-524 |
| Cow position: | chr22:13210195-13210710 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 60 |
| Conread position: | 3-541 |
| Cow position: | chr22:42777749-42778293 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 58 |
| Conread position: | 4-539 |
| Cow position: | chr22:41927763-41927251 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 356 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 227, 20 |
| Conread position: | 4-568 |
| Cow position: | chr22:14820988-14820437 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 133 |
| Conread position: | 5-135 |
| Cow position: | chr22:26056988-26057113 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 108, 57 |
| Conread position: | 5-328 |
| Cow position: | chr22:9110986-9111317 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 108, 48 |
| Conread position: | 5-354 |
| Cow position: | chr22:10065310-10064976 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 50, 61 |
| Conread position: | 5-537 |
| Cow position: | chr22:29575258-29574750 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 48 |
| Conread position: | 7-545 |
| Cow position: | chr22:42946469-42945935 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 362 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 43, 17 |
| Conread position: | 9-318 |
| Cow position: | chr22:39600849-39601153 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 46, 55 |
| Conread position: | 11-178 |
| Cow position: | chr22:9286858-9286696 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 102, 31 |
| Conread position: | 14-265 |
| Cow position: | chr22:15929372-15929116 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 8, 51 |
| Conread position: | 20-322 |
| Cow position: | chr22:11805530-11805248 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 88, 35 |
| Conread position: | 20-530 |
| Cow position: | chr22:27223716-27224224 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 44 |
| Conread position: | 20-534 |
| Cow position: | chr22:29441666-29441165 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 44 |
| Conread position: | 61-370 |
| Cow position: | chr22:36761251-36761563 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 49, 235 |
| Conread position: | 61-512 |
| Cow position: | chr22:30963749-30964207 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 301 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 53, 179 |
| Conread position: | 64-313 |
| Cow position: | chr22:12892954-12892689 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 70-317 |
| Cow position: | chr22:19139831-19139566 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 71-371 |
| Cow position: | chr22:31513453-31513148 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 32, 70 |
| Conread position: | 71-403 |
| Cow position: | chr22:15428809-15428477 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 42, 71 |
| Conread position: | 71-503 |
| Cow position: | chr22:19775795-19775361 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 132 |
| Conread position: | 117-443 |
| Cow position: | chr22:845586-845913 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 233 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 109, 59 |
| Conread position: | 130-572 |
| Cow position: | chr22:19295601-19296041 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 199 |
| Conread position: | 140-456 |
| Cow position: | chr22:16263725-16264038 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 143 |
| Conread position: | 143-508 |
| Cow position: | chr22:22997184-22997552 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 62, 33 |
| Conread position: | 146-570 |
| Cow position: | chr22:25457533-25457977 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 67 |
| Conread position: | 158-532 |
| Cow position: | chr22:39294023-39293645 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 33 |
| Conread position: | 164-540 |
| Cow position: | chr22:13249783-13250147 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 270 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 66, 27 |
| Conread position: | 166-508 |
| Cow position: | chr22:7302117-7301760 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 42, 244 |
| Conread position: | 172-572 |
| Cow position: | chr22:23798984-23798578 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 45 |
| Conread position: | 174-405 |
| Cow position: | chr22:1610020-1609785 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 53, 116 |
| Conread position: | 174-527 |
| Cow position: | chr22:17569937-17570298 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 53, 32 |
| Conread position: | 176-372 |
| Cow position: | chr22:24066497-24066297 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 52, 30 |
| Conread position: | 176-542 |
| Cow position: | chr22:29549491-29549119 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 180 |
| Conread position: | 177-543 |
| Cow position: | chr22:41407456-41407116 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 248 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 141, 32 |
| Conread position: | 181-567 |
| Cow position: | chr22:610186-609803 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 62 |
| Conread position: | 181-568 |
| Cow position: | chr22:39303263-39302868 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 62 |
| Conread position: | 182-556 |
| Cow position: | chr22:30655062-30655441 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 103 |
| Conread position: | 182-572 |
| Cow position: | chr22:40805641-40806014 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 265 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 46, 74 |
| Conread position: | 182-572 |
| Cow position: | chr22:43044420-43044034 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 27 |
| Conread position: | 188-526 |
| Cow position: | chr22:41388868-41389200 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 149, 46 |
| Conread position: | 191-485 |
| Cow position: | chr22:11746153-11745852 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 36, 24 |
| Conread position: | 191-571 |
| Cow position: | chr22:28755745-28755367 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 280 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 40, 15 |
| Conread position: | 196-427 |
| Cow position: | chr22:39452346-39452597 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 35, 217 |
| Conread position: | 221-571 |
| Cow position: | chr22:15876957-15876633 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 241 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 10, 104 |
| Conread position: | 222-566 |
| Cow position: | chr22:24905828-24905491 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 9, 67 |
| Conread position: | 235-572 |
| Cow position: | chr22:15496317-15496638 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 247 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 36, 90 |
| Conread position: | 248-572 |
| Cow position: | chr22:7281027-7281351 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 18 |
| Conread position: | 267-562 |
| Cow position: | chr22:31735482-31735776 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 58, 12 |
| Conread position: | 274-558 |
| Cow position: | chr22:139465-139178 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 52, 134 |
| Conread position: | 280-572 |
| Cow position: | chr22:15696021-15696291 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 44, 59 |
| Conread position: | 292-566 |
| Cow position: | chr22:42977905-42978182 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 43, 9 |
| Conread position: | 328-530 |
| Cow position: | chr22:34087464-34087257 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 378-572 |
| Cow position: | chr22:14508640-14508450 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 43, 15 |
| Conread position: | 395-571 |
| Cow position: | chr22:24335534-24335360 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 144 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 148, 0 |
| Conread position: | 401-522 |
| Cow position: | chr22:11133428-11133306 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 402-541 |
| Cow position: | chr22:25405019-25404881 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 11, 46 |
| Conread position: | 402-572 |
| Cow position: | chr22:45496543-45496711 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 61, 119 |
| Conread position: | 414-566 |
| Cow position: | chr22:23679729-23679874 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 430-571 |
| Cow position: | chr22:45291504-45291639 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 50, 0 |
Show alignments to all cow chromosomes.