Cow genome map
| Conread name: | rpigcf0_000927.y1 |
| Conread position: | 3-324 |
| Cow position: | chr23:11932817-11933143 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 182, 50 |
| Conread position: | 3-497 |
| Cow position: | chr23:644914-645397 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 35 |
| Conread position: | 3-550 |
| Cow position: | chr23:9725645-9725125 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 61 |
| Conread position: | 4-558 |
| Cow position: | chr23:21630813-21631343 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 50 |
| Conread position: | 5-187 |
| Cow position: | chr23:7221644-7221469 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 48, 61 |
| Conread position: | 5-507 |
| Cow position: | chr23:21394995-21394495 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 19 |
| Conread position: | 5-534 |
| Cow position: | chr23:28700580-28701092 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 348 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 106, 45 |
| Conread position: | 5-534 |
| Cow position: | chr23:29271703-29272220 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 61 |
| Conread position: | 8-566 |
| Cow position: | chr23:2436749-2436200 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 47 |
| Conread position: | 13-534 |
| Cow position: | chr23:3140446-3140955 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 357 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 40, 53 |
| Conread position: | 14-441 |
| Cow position: | chr23:26066709-26067127 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 272 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 132, 40 |
| Conread position: | 20-377 |
| Cow position: | chr23:1721388-1721034 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 35, 44 |
| Conread position: | 61-332 |
| Cow position: | chr23:8063176-8063458 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 52, 248 |
| Conread position: | 71-224 |
| Cow position: | chr23:2269654-2269501 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 42, 131 |
| Conread position: | 71-527 |
| Cow position: | chr23:9711944-9711496 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 310 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 39, 68 |
| Conread position: | 71-534 |
| Cow position: | chr23:17092852-17092392 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 311 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 39, 283 |
| Conread position: | 159-532 |
| Cow position: | chr23:30912569-30912203 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 250 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 72, 168 |
| Conread position: | 166-542 |
| Cow position: | chr23:5737994-5737607 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 258 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 61, 47 |
| Conread position: | 167-572 |
| Cow position: | chr23:2371116-2371506 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 45 |
| Conread position: | 168-478 |
| Cow position: | chr23:16610075-16609755 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 248 |
| Conread position: | 169-527 |
| Cow position: | chr23:35363037-35362679 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 239 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 63, 175 |
| Conread position: | 174-540 |
| Cow position: | chr23:10415285-10414911 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 149 |
| Conread position: | 176-443 |
| Cow position: | chr23:36129159-36128893 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 55, 92 |
| Conread position: | 176-572 |
| Cow position: | chr23:25408583-25408975 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 23 |
| Conread position: | 178-534 |
| Cow position: | chr23:792287-791929 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 261 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 24, 80 |
| Conread position: | 181-514 |
| Cow position: | chr23:23284894-23285209 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 128 |
| Conread position: | 181-519 |
| Cow position: | chr23:40526220-40525892 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 59, 30 |
| Conread position: | 181-521 |
| Cow position: | chr23:36217731-36217403 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 50, 114 |
| Conread position: | 181-539 |
| Cow position: | chr23:3715513-3715868 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 210 |
| Conread position: | 181-568 |
| Cow position: | chr23:7750937-7751335 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 281 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 91, 52 |
| Conread position: | 181-572 |
| Cow position: | chr23:16170447-16170850 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 25 |
| Conread position: | 188-503 |
| Cow position: | chr23:7063752-7063440 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 85 |
| Conread position: | 188-519 |
| Cow position: | chr23:40862094-40862437 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 43, 238 |
| Conread position: | 188-568 |
| Cow position: | chr23:7322042-7321675 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 18 |
| Conread position: | 189-467 |
| Cow position: | chr23:9546152-9546445 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 214 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 195-568 |
| Cow position: | chr23:11068983-11069349 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 128 |
| Conread position: | 202-527 |
| Cow position: | chr23:30307677-30308007 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 130 |
| Conread position: | 230-562 |
| Cow position: | chr23:20173004-20173318 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 236 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 42, 111 |
| Conread position: | 236-514 |
| Cow position: | chr23:1663493-1663764 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 44, 87 |
| Conread position: | 245-572 |
| Cow position: | chr23:39323672-39323990 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 233 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 27, 80 |
| Conread position: | 256-566 |
| Cow position: | chr23:10845066-10844759 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 216 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 94, 32 |
| Conread position: | 264-565 |
| Cow position: | chr23:7252902-7253198 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 82 |
| Conread position: | 269-502 |
| Cow position: | chr23:30128266-30128037 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 97, 52 |
| Conread position: | 269-563 |
| Cow position: | chr23:22524655-22524383 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 109, 30 |
| Conread position: | 271-572 |
| Cow position: | chr23:38026978-38026677 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 217 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 83, 140 |
| Conread position: | 291-543 |
| Cow position: | chr23:30745721-30745458 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 57, 14 |
| Conread position: | 359-572 |
| Cow position: | chr23:1083570-1083352 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 60, 22 |
| Conread position: | 376-572 |
| Cow position: | chr23:8737883-8737689 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 171, 0 |
| Conread position: | 395-572 |
| Cow position: | chr23:5265545-5265371 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 145 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 407-572 |
| Cow position: | chr23:25079200-25079044 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 436-572 |
| Cow position: | chr23:15054077-15054211 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 122, 10 |
| Conread position: | 443-572 |
| Cow position: | chr23:15694376-15694500 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 454-572 |
| Cow position: | chr23:23916611-23916728 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 37, 90 |
Show alignments to all cow chromosomes.