Cow genome map
| Conread name: | rpigcf0_000927.y1 |
| Conread position: | 3-513 |
| Cow position: | chr24:39608019-39607514 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 51 |
| Conread position: | 3-572 |
| Cow position: | chr24:17763693-17763147 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 50 |
| Conread position: | 3-572 |
| Cow position: | chr24:25245609-25246151 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 59 |
| Conread position: | 5-374 |
| Cow position: | chr24:30545306-30544948 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 266 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 51, 59 |
| Conread position: | 5-519 |
| Cow position: | chr24:32759212-32758697 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 59 |
| Conread position: | 5-572 |
| Cow position: | chr24:37386785-37386235 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 36 |
| Conread position: | 7-528 |
| Cow position: | chr24:25229502-25228990 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 50 |
| Conread position: | 12-353 |
| Cow position: | chr24:36730054-36730397 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 239 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 43, 52 |
| Conread position: | 16-520 |
| Cow position: | chr24:42943566-42943053 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 30 |
| Conread position: | 20-406 |
| Cow position: | chr24:8814421-8814048 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 255 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 90, 30 |
| Conread position: | 61-224 |
| Cow position: | chr24:24457937-24457764 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 61-369 |
| Cow position: | chr24:40257869-40257570 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 216 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 165, 77 |
| Conread position: | 71-359 |
| Cow position: | chr24:27096292-27096587 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 39, 206 |
| Conread position: | 71-527 |
| Cow position: | chr24:6508159-6507698 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 143 |
| Conread position: | 164-483 |
| Cow position: | chr24:28029000-28028679 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 234 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 66, 49 |
| Conread position: | 166-572 |
| Cow position: | chr24:28067477-28067856 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 275 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 102, 49 |
| Conread position: | 167-566 |
| Cow position: | chr24:26846570-26846149 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 273 |
| Conread position: | 167-572 |
| Cow position: | chr24:35836530-35836131 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 170 |
| Conread position: | 167-572 |
| Cow position: | chr24:38643344-38643728 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 39 |
| Conread position: | 168-539 |
| Cow position: | chr24:34369297-34368923 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 41 |
| Conread position: | 170-572 |
| Cow position: | chr24:30900516-30900114 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 19 |
| Conread position: | 171-515 |
| Cow position: | chr24:7030441-7030090 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 60, 28 |
| Conread position: | 172-513 |
| Cow position: | chr24:8021289-8021609 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 33, 17 |
| Conread position: | 172-566 |
| Cow position: | chr24:32668989-32669362 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 287 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 39, 158 |
| Conread position: | 174-375 |
| Cow position: | chr24:7001354-7001145 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 30, 175 |
| Conread position: | 174-527 |
| Cow position: | chr24:1272154-1271817 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 53, 116 |
| Conread position: | 186-499 |
| Cow position: | chr24:16476134-16476451 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 232 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 45, 20 |
| Conread position: | 190-482 |
| Cow position: | chr24:14913801-14913517 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 34, 16 |
| Conread position: | 191-482 |
| Cow position: | chr24:17999593-17999868 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 231, 123 |
| Conread position: | 199-571 |
| Cow position: | chr24:15473700-15474059 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 48 |
| Conread position: | 210-562 |
| Cow position: | chr24:30695948-30695593 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 16, 84 |
| Conread position: | 230-543 |
| Cow position: | chr24:12572295-12572618 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 223 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 23, 195 |
| Conread position: | 261-526 |
| Cow position: | chr24:27054211-27054483 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 12, 155 |
| Conread position: | 269-540 |
| Cow position: | chr24:37480501-37480239 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 124, 51 |
| Conread position: | 272-534 |
| Cow position: | chr24:35827557-35827816 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 102, 50 |
| Conread position: | 292-521 |
| Cow position: | chr24:40041005-40040777 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 58, 21 |
| Conread position: | 305-572 |
| Cow position: | chr24:6177250-6177512 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 48 |
| Conread position: | 311-511 |
| Cow position: | chr24:41405462-41405256 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 311-572 |
| Cow position: | chr24:16476574-16476831 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 50, 33 |
| Conread position: | 326-561 |
| Cow position: | chr24:28440460-28440697 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 10, 88 |
| Conread position: | 326-572 |
| Cow position: | chr24:19627200-19627446 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 51, 102 |
| Conread position: | 351-562 |
| Cow position: | chr24:19644566-19644778 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 22, 53 |
| Conread position: | 351-572 |
| Cow position: | chr24:42817160-42817376 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 170 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 355-568 |
| Cow position: | chr24:36173054-36173275 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 55, 117 |
| Conread position: | 393-530 |
| Cow position: | chr24:7038701-7038839 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 17, 101 |
| Conread position: | 401-572 |
| Cow position: | chr24:6665495-6665326 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 401-572 |
| Cow position: | chr24:36853272-36853438 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 402-572 |
| Cow position: | chr24:43351150-43350981 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 7, 142 |
| Conread position: | 422-572 |
| Cow position: | chr24:43492534-43492392 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 5, 0 |
Show alignments to all cow chromosomes.