Cow genome map
| Conread name: | rpigcf0_000927.y1 |
| Conread position: | 2-341 |
| Cow position: | chr25:5568168-5567819 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 258 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 52, 62 |
| Conread position: | 3-473 |
| Cow position: | chr25:12757004-12756522 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 58 |
| Conread position: | 3-560 |
| Cow position: | chr25:24302661-24302123 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 58 |
| Conread position: | 6-526 |
| Cow position: | chr25:24406173-24405640 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 53 |
| Conread position: | 6-527 |
| Cow position: | chr25:20007716-20008228 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 342 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 21, 60 |
| Conread position: | 13-572 |
| Cow position: | chr25:34236977-34236439 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 53 |
| Conread position: | 14-527 |
| Cow position: | chr25:10012449-10011964 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 41 |
| Conread position: | 19-458 |
| Cow position: | chr25:35612723-35612287 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 298 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 91, 8 |
| Conread position: | 20-319 |
| Cow position: | chr25:27510650-27510349 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 90, 33 |
| Conread position: | 20-333 |
| Cow position: | chr25:18310382-18310704 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 226 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 89, 35 |
| Conread position: | 71-333 |
| Cow position: | chr25:24168274-24168002 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 42, 144 |
| Conread position: | 71-379 |
| Cow position: | chr25:4002429-4002748 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 212 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 43, 37 |
| Conread position: | 71-526 |
| Cow position: | chr25:34668870-34669336 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 315 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 40, 118 |
| Conread position: | 72-566 |
| Cow position: | chr25:26757087-26757578 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 343 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 170, 44 |
| Conread position: | 103-572 |
| Cow position: | chr25:18206632-18206165 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 35 |
| Conread position: | 114-564 |
| Cow position: | chr25:25866606-25867029 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 311 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 17, 52 |
| Conread position: | 166-402 |
| Cow position: | chr25:24227607-24227366 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 62, 177 |
| Conread position: | 172-526 |
| Cow position: | chr25:2126204-2126555 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 52, 174 |
| Conread position: | 176-513 |
| Cow position: | chr25:40957247-40956904 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 55, 30 |
| Conread position: | 181-376 |
| Cow position: | chr25:788013-788207 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 46, 54 |
| Conread position: | 182-543 |
| Cow position: | chr25:38357849-38358204 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 76 |
| Conread position: | 182-572 |
| Cow position: | chr25:16430279-16429908 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 24 |
| Conread position: | 187-514 |
| Cow position: | chr25:23739509-23739191 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 227 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 44, 135 |
| Conread position: | 187-515 |
| Cow position: | chr25:23672135-23671816 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 44, 135 |
| Conread position: | 191-572 |
| Cow position: | chr25:30035302-30035688 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 359 |
| Conread position: | 202-543 |
| Cow position: | chr25:28012854-28012540 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 246 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 29, 7 |
| Conread position: | 203-441 |
| Cow position: | chr25:14570135-14570384 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 28, 45 |
| Conread position: | 210-561 |
| Cow position: | chr25:32472181-32472529 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 241 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 15, 118 |
| Conread position: | 238-572 |
| Cow position: | chr25:13122975-13123306 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 112, 138 |
| Conread position: | 248-514 |
| Cow position: | chr25:33786272-33786006 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 26, 100 |
| Conread position: | 256-561 |
| Cow position: | chr25:9867101-9867391 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 125, 82 |
| Conread position: | 261-566 |
| Cow position: | chr25:13472063-13471770 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 217 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 148, 0 |
| Conread position: | 263-538 |
| Cow position: | chr25:23355745-23356019 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 55, 124 |
| Conread position: | 273-571 |
| Cow position: | chr25:10013577-10013295 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 217 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 77, 42 |
| Conread position: | 278-514 |
| Cow position: | chr25:22180159-22179927 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 74, 44 |
| Conread position: | 305-527 |
| Cow position: | chr25:16941207-16940983 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 47, 36 |
| Conread position: | 345-572 |
| Cow position: | chr25:14279174-14279403 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 36, 205 |
| Conread position: | 384-570 |
| Cow position: | chr25:18644123-18643938 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 38, 14 |
| Conread position: | 401-572 |
| Cow position: | chr25:17660227-17660395 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 402-572 |
| Cow position: | chr25:5567794-5567625 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 150, 141 |
| Conread position: | 416-572 |
| Cow position: | chr25:16240612-16240460 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 44, 0 |
Show alignments to all cow chromosomes.