Cow genome map
| Conread name: | rpigcf0_000927.y1 |
| Conread position: | 1-324 |
| Cow position: | chr27:10670843-10671169 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 112, 52 |
| Conread position: | 1-376 |
| Cow position: | chr27:795173-794799 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 255 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 112, 53 |
| Conread position: | 3-276 |
| Cow position: | chr27:6641617-6641337 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 46 |
| Conread position: | 3-328 |
| Cow position: | chr27:10283948-10284268 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 228 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 204, 56 |
| Conread position: | 3-431 |
| Cow position: | chr27:12240658-12241081 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 50 |
| Conread position: | 3-571 |
| Cow position: | chr27:11672378-11671832 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 61 |
| Conread position: | 4-572 |
| Cow position: | chr27:25676621-25676046 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 20 |
| Conread position: | 5-379 |
| Cow position: | chr27:6523415-6523045 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 277 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 13, 60 |
| Conread position: | 5-474 |
| Cow position: | chr27:25471518-25471051 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 59 |
| Conread position: | 5-527 |
| Cow position: | chr27:21578213-21578715 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 44 |
| Conread position: | 14-177 |
| Cow position: | chr27:8048337-8048497 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 41, 50 |
| Conread position: | 20-370 |
| Cow position: | chr27:13638621-13638976 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 247 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 33, 43 |
| Conread position: | 56-318 |
| Cow position: | chr27:30374240-30374502 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 54, 83 |
| Conread position: | 56-458 |
| Cow position: | chr27:10306960-10307372 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 271 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 16, 124 |
| Conread position: | 70-406 |
| Cow position: | chr27:15201026-15200677 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 147 |
| Conread position: | 119-333 |
| Cow position: | chr27:31216897-31217113 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 106, 55 |
| Conread position: | 121-560 |
| Cow position: | chr27:19577947-19577503 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 88 |
| Conread position: | 156-530 |
| Cow position: | chr27:9159430-9159065 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 102 |
| Conread position: | 168-508 |
| Cow position: | chr27:11416666-11416330 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 226 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 32, 54 |
| Conread position: | 174-424 |
| Cow position: | chr27:11723687-11723947 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 57, 172 |
| Conread position: | 181-561 |
| Cow position: | chr27:9371710-9371338 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 257 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 49, 100 |
| Conread position: | 181-564 |
| Cow position: | chr27:27737721-27738103 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 25 |
| Conread position: | 182-500 |
| Cow position: | chr27:26653514-26653195 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 226 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 56, 149 |
| Conread position: | 183-536 |
| Cow position: | chr27:30698417-30698768 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 238 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 54, 22 |
| Conread position: | 183-572 |
| Cow position: | chr27:1141827-1142218 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 38 |
| Conread position: | 183-572 |
| Cow position: | chr27:30888692-30889076 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 23 |
| Conread position: | 185-523 |
| Cow position: | chr27:28293376-28293024 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 257 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 46, 24 |
| Conread position: | 202-534 |
| Cow position: | chr27:14937238-14937576 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 235 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 5, 74 |
| Conread position: | 203-508 |
| Cow position: | chr27:10997691-10997406 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 28, 65 |
| Conread position: | 232-566 |
| Cow position: | chr27:4007089-4007434 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 244 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 33, 93 |
| Conread position: | 245-527 |
| Cow position: | chr27:12243992-12244266 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 142, 35 |
| Conread position: | 254-528 |
| Cow position: | chr27:30447310-30447035 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 197 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 17, 86 |
| Conread position: | 255-484 |
| Cow position: | chr27:8587527-8587772 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 17, 185 |
| Conread position: | 261-387 |
| Cow position: | chr27:31262256-31262380 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 72, 78 |
| Conread position: | 263-572 |
| Cow position: | chr27:3934563-3934867 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 74 |
| Conread position: | 272-524 |
| Cow position: | chr27:18569575-18569330 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 279-551 |
| Cow position: | chr27:156317-156586 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 95, 35 |
| Conread position: | 313-570 |
| Cow position: | chr27:9261909-9261648 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 91 |
| Conread position: | 315-543 |
| Cow position: | chr27:5530827-5530594 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 89 |
| Conread position: | 403-572 |
| Cow position: | chr27:9184607-9184436 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 60, 28 |
| Conread position: | 405-543 |
| Cow position: | chr27:31237975-31238113 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 412-566 |
| Cow position: | chr27:16024079-16023928 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 74, 0 |
Show alignments to all cow chromosomes.