Cow genome map
| Conread name: | rpigcf0_000927.y1 |
| Conread position: | 1-572 |
| Cow position: | chr28:7606808-7607377 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 53 |
| Conread position: | 3-284 |
| Cow position: | chr28:19961490-19961771 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 113, 51 |
| Conread position: | 3-291 |
| Cow position: | chr28:3820588-3820308 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 125, 60 |
| Conread position: | 3-343 |
| Cow position: | chr28:31415858-31415512 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 62 |
| Conread position: | 3-431 |
| Cow position: | chr28:22081147-22081575 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 40 |
| Conread position: | 3-564 |
| Cow position: | chr28:30370385-30370924 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 374 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 225, 56 |
| Conread position: | 3-572 |
| Cow position: | chr28:20264978-20265546 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 21 |
| Conread position: | 6-534 |
| Cow position: | chr28:3770066-3769563 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 346 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 49, 58 |
| Conread position: | 12-156 |
| Cow position: | chr28:13935793-13935933 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 99, 38 |
| Conread position: | 12-520 |
| Cow position: | chr28:21569759-21570286 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 270 |
| Conread position: | 12-571 |
| Cow position: | chr28:11380452-11379896 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 47 |
| Conread position: | 19-376 |
| Cow position: | chr28:29074153-29073801 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 263 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 34, 44 |
| Conread position: | 20-376 |
| Cow position: | chr28:12049095-12048751 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 90, 34 |
| Conread position: | 21-534 |
| Cow position: | chr28:21873368-21873867 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 41 |
| Conread position: | 61-224 |
| Cow position: | chr28:14721186-14721024 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 49, 83 |
| Conread position: | 61-458 |
| Cow position: | chr28:23459765-23460180 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 274 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 49, 278 |
| Conread position: | 65-335 |
| Cow position: | chr28:19133417-19133695 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 7, 94 |
| Conread position: | 109-379 |
| Cow position: | chr28:4841710-4841444 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 117, 11 |
| Conread position: | 147-572 |
| Cow position: | chr28:2340251-2340681 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 36 |
| Conread position: | 162-515 |
| Cow position: | chr28:28438302-28438641 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 242 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 69, 100 |
| Conread position: | 166-444 |
| Cow position: | chr28:22351230-22351514 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 36, 146 |
| Conread position: | 166-566 |
| Cow position: | chr28:33697856-33698247 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 274 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 62, 43 |
| Conread position: | 172-547 |
| Cow position: | chr28:22317220-22317604 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 62, 34 |
| Conread position: | 173-458 |
| Cow position: | chr28:15934898-15934609 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 200 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 78, 33 |
| Conread position: | 176-519 |
| Cow position: | chr28:25563823-25564178 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 240 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 51, 343 |
| Conread position: | 181-507 |
| Cow position: | chr28:25306700-25307038 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 237 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 15, 191 |
| Conread position: | 181-515 |
| Cow position: | chr28:480669-480339 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 56, 31 |
| Conread position: | 181-564 |
| Cow position: | chr28:13936168-13936535 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 135 |
| Conread position: | 181-566 |
| Cow position: | chr28:34636430-34636804 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 107 |
| Conread position: | 183-572 |
| Cow position: | chr28:6486347-6486740 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 172 |
| Conread position: | 188-541 |
| Cow position: | chr28:13725921-13726279 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 18 |
| Conread position: | 193-517 |
| Cow position: | chr28:25826107-25825773 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 38, 296 |
| Conread position: | 193-572 |
| Cow position: | chr28:6277777-6277406 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 82 |
| Conread position: | 206-519 |
| Cow position: | chr28:10674464-10674766 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 21, 122 |
| Conread position: | 212-572 |
| Cow position: | chr28:22855087-22855434 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 115 |
| Conread position: | 214-572 |
| Cow position: | chr28:21939980-21940321 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 167 |
| Conread position: | 245-538 |
| Cow position: | chr28:7345352-7345643 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 31, 81 |
| Conread position: | 255-493 |
| Cow position: | chr28:23352397-23352643 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 10, 215 |
| Conread position: | 257-572 |
| Cow position: | chr28:26627312-26626998 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 231 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 94, 8 |
| Conread position: | 261-572 |
| Cow position: | chr28:22613762-22614059 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 120, 60 |
| Conread position: | 292-572 |
| Cow position: | chr28:22829797-22830069 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 71 |
| Conread position: | 322-566 |
| Cow position: | chr28:19961759-19962006 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 17, 226 |
| Conread position: | 344-572 |
| Cow position: | chr28:16466537-16466764 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 6, 195 |
| Conread position: | 345-566 |
| Cow position: | chr28:3068845-3069060 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 402-562 |
| Cow position: | chr28:19356291-19356441 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 412-572 |
| Cow position: | chr28:15915263-15915106 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 427-571 |
| Cow position: | chr28:34347248-34347109 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 428-572 |
| Cow position: | chr28:28630576-28630719 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 92, 115 |
Show alignments to all cow chromosomes.