Cow genome map

Conread name: rpigcf0_000927.y1

Conread position: 3-320
Cow position: chr29:254656-254972 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 220
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 107, 46

Conread position: 3-328
Cow position: chr29:4755428-4755116 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 222
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 137, 50

Conread position: 3-335
Cow position: chr29:18521451-18521125 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 52

Conread position: 3-512
Cow position: chr29:38247151-38246661 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 47

Conread position: 3-572
Cow position: chr29:2589309-2588755 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 65

Conread position: 4-545
Cow position: chr29:13634732-13634186 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 360
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 5, 61

Conread position: 5-319
Cow position: chr29:29615322-29614990 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 228
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 108, 48

Conread position: 5-513
Cow position: chr29:16662645-16663174 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 262

Conread position: 6-328
Cow position: chr29:2367206-2366883 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 230
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 43, 58

Conread position: 12-566
Cow position: chr29:2885888-2885322 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 48

Conread position: 13-569
Cow position: chr29:42268259-42268832 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 46

Conread position: 14-207
Cow position: chr29:10154177-10153990 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 147
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 39, 50

Conread position: 19-379
Cow position: chr29:19338570-19338935 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 262
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 95, 36

Conread position: 21-545
Cow position: chr29:477675-478221 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 29

Conread position: 29-527
Cow position: chr29:25088355-25088837 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 331
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 81, 25

Conread position: 45-178
Cow position: chr29:18694831-18694967 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 103
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 68, 0

Conread position: 64-544
Cow position: chr29:30812379-30812861 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 76

Conread position: 71-319
Cow position: chr29:12956664-12956424 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 179
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 43, 68

Conread position: 71-319
Cow position: chr29:27123697-27123459 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 176
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 155, 41

Conread position: 71-328
Cow position: chr29:7051590-7051853 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 191
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 42, 71

Conread position: 75-376
Cow position: chr29:43009452-43009137 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 211
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 38, 86

Conread position: 146-572
Cow position: chr29:6472027-6472446 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 293
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 83, 60

Conread position: 156-566
Cow position: chr29:17965677-17966096 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 200

Conread position: 168-572
Cow position: chr29:18338814-18338405 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 245

Conread position: 170-534
Cow position: chr29:18963474-18963835 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 252
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 61, 176

Conread position: 170-566
Cow position: chr29:32809194-32809571 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 286
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 64, 39

Conread position: 172-376
Cow position: chr29:29056919-29057124 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 147
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 18, 63

Conread position: 172-516
Cow position: chr29:19907092-19907439 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 229
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 59, 70

Conread position: 174-523
Cow position: chr29:43963783-43963441 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 247
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 57, 154

Conread position: 175-566
Cow position: chr29:18880647-18880286 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 265
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 32, 69

Conread position: 176-541
Cow position: chr29:19931097-19931439 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 256
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 174, 53

Conread position: 176-572
Cow position: chr29:133932-134312 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 280
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 26, 150

Conread position: 182-515
Cow position: chr29:7750128-7749806 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 241
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 51, 24

Conread position: 182-572
Cow position: chr29:13040806-13040400 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 342

Conread position: 183-485
Cow position: chr29:15758183-15758483 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 213
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 48, 147

Conread position: 187-572
Cow position: chr29:16359364-16359759 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 57

Conread position: 188-555
Cow position: chr29:34757782-34758143 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 136

Conread position: 191-522
Cow position: chr29:37961222-37960886 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 230
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 36, 26

Conread position: 200-567
Cow position: chr29:17339535-17339172 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 148

Conread position: 202-572
Cow position: chr29:31488633-31489000 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 67

Conread position: 203-572
Cow position: chr29:22455027-22454688 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 262
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 59, 31

Conread position: 210-517
Cow position: chr29:7959741-7959440 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 201
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 21, 113

Conread position: 212-571
Cow position: chr29:14034551-14034194 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 171

Conread position: 226-572
Cow position: chr29:8906313-8906669 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 329

Conread position: 227-570
Cow position: chr29:2481540-2481203 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 47

Conread position: 274-562
Cow position: chr29:9512714-9513001 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 105

Conread position: 279-570
Cow position: chr29:35036578-35036864 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 212
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 70, 233

Conread position: 313-571
Cow position: chr29:14032358-14032107 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 173
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 16, 65

Conread position: 314-572
Cow position: chr29:798518-798257 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 181
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 36, 16

Conread position: 323-502
Cow position: chr29:13653124-13653306 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 136
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 9, 16

Conread position: 403-572
Cow position: chr29:30921709-30921551 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 129
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 94, 69

Conread position: 407-572
Cow position: chr29:37207739-37207900 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 126
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 120, 0

Conread position: 418-571
Cow position: chr29:21198662-21198513 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 122
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 93, 0

Show alignments to all cow chromosomes.