Cow genome map

Conread name: rpigcf0_000927.y1

Conread position: 1-568
Cow position: chr3:42489745-42489189 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 63

Conread position: 3-331
Cow position: chr3:16886341-16886002 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 250
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 109, 60

Conread position: 3-519
Cow position: chr3:66649872-66649370 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 342
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 107, 43

Conread position: 3-562
Cow position: chr3:44254863-44254330 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 51

Conread position: 3-572
Cow position: chr3:84152887-84153432 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 51

Conread position: 4-533
Cow position: chr3:33468924-33468412 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 18

Conread position: 5-240
Cow position: chr3:6882876-6883109 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 167
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 105, 45

Conread position: 5-317
Cow position: chr3:26532238-26531947 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 210
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 132, 24

Conread position: 6-474
Cow position: chr3:18459118-18458638 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 68

Conread position: 9-515
Cow position: chr3:42914003-42914490 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 10

Conread position: 12-371
Cow position: chr3:65581453-65581097 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 50

Conread position: 12-458
Cow position: chr3:45342708-45343153 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 306
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 101, 13

Conread position: 13-527
Cow position: chr3:33327275-33327782 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 40

Conread position: 14-376
Cow position: chr3:32869704-32870071 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 50

Conread position: 14-514
Cow position: chr3:43007840-43007348 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 36

Conread position: 16-369
Cow position: chr3:39970310-39969952 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 249
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 34, 44

Conread position: 19-328
Cow position: chr3:20405183-20405471 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 214
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 207, 40

Conread position: 61-376
Cow position: chr3:48275422-48275756 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 217
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 48, 0

Conread position: 71-379
Cow position: chr3:58383596-58383892 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 219
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 156, 41

Conread position: 73-572
Cow position: chr3:73417140-73417631 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 66

Conread position: 89-379
Cow position: chr3:78946204-78945909 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 216
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 25, 88

Conread position: 119-442
Cow position: chr3:27274202-27274519 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 210
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 233, 37

Conread position: 137-505
Cow position: chr3:58130679-58131047 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 192

Conread position: 137-572
Cow position: chr3:77467611-77468064 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 322

Conread position: 144-521
Cow position: chr3:74699709-74699314 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 280

Conread position: 148-568
Cow position: chr3:42594967-42594540 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 59

Conread position: 149-508
Cow position: chr3:23092297-23091921 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 258
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 53, 274

Conread position: 154-572
Cow position: chr3:27347605-27347216 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 296
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 31, 12

Conread position: 155-484
Cow position: chr3:56637363-56637695 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 233
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 76, 173

Conread position: 158-566
Cow position: chr3:73236470-73236876 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 287
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 84, 46

Conread position: 160-562
Cow position: chr3:51598086-51598477 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 46

Conread position: 164-505
Cow position: chr3:78546387-78546063 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 24

Conread position: 164-527
Cow position: chr3:66708365-66707994 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 252
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 63, 12

Conread position: 164-572
Cow position: chr3:52722291-52721893 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 126

Conread position: 167-534
Cow position: chr3:8753173-8753535 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 39

Conread position: 168-515
Cow position: chr3:58954010-58954347 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 241
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 63, 38

Conread position: 170-555
Cow position: chr3:20471646-20471261 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 270
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 61, 17

Conread position: 170-572
Cow position: chr3:40345112-40345525 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 281
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 38, 93

Conread position: 172-572
Cow position: chr3:67044381-67043983 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 34

Conread position: 173-518
Cow position: chr3:68291281-68291621 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 252
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 58, 82

Conread position: 174-534
Cow position: chr3:37186552-37186905 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 237
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 57, 35

Conread position: 174-572
Cow position: chr3:16115289-16115693 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 300
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 57, 18

Conread position: 176-519
Cow position: chr3:53588672-53588319 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 251
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 55, 85

Conread position: 176-534
Cow position: chr3:5420148-5419785 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 253
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 51, 168

Conread position: 176-542
Cow position: chr3:39554599-39554246 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 258
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 55, 30

Conread position: 176-550
Cow position: chr3:24531553-24531915 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 30

Conread position: 176-572
Cow position: chr3:58206733-58206334 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 174

Conread position: 177-572
Cow position: chr3:55460782-55460383 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 193

Conread position: 180-566
Cow position: chr3:77448795-77449168 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 266
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 12, 81

Conread position: 181-372
Cow position: chr3:17222421-17222227 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 149
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 46, 64

Conread position: 181-379
Cow position: chr3:17456546-17456342 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 147
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 46, 166

Conread position: 181-485
Cow position: chr3:48370854-48371165 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 168

Conread position: 181-521
Cow position: chr3:46094560-46094888 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 233
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 53, 39

Conread position: 181-541
Cow position: chr3:35511511-35511872 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 253
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 54, 36

Conread position: 181-553
Cow position: chr3:16622305-16621930 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 260
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 50, 32

Conread position: 181-564
Cow position: chr3:70754088-70754470 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 173

Conread position: 181-571
Cow position: chr3:23477958-23478342 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 166

Conread position: 182-376
Cow position: chr3:33633162-33632969 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 145
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 45, 7

Conread position: 182-432
Cow position: chr3:81473728-81473992 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 193
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 31, 122

Conread position: 182-571
Cow position: chr3:74849314-74848935 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 24

Conread position: 183-508
Cow position: chr3:41718116-41718446 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 239
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 42, 11

Conread position: 183-562
Cow position: chr3:55445092-55445471 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 14

Conread position: 187-534
Cow position: chr3:11422476-11422818 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 248
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 85, 158

Conread position: 189-469
Cow position: chr3:46013225-46012938 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 213
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 18, 150

Conread position: 191-543
Cow position: chr3:49337463-49337809 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 18

Conread position: 191-572
Cow position: chr3:32772965-32773318 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 269
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 40, 18

Conread position: 193-507
Cow position: chr3:80655191-80655495 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 133

Conread position: 197-572
Cow position: chr3:31287357-31286993 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 127

Conread position: 201-572
Cow position: chr3:3690980-3690612 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 60

Conread position: 201-572
Cow position: chr3:19689915-19689529 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 359

Conread position: 204-572
Cow position: chr3:18352088-18351746 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 257
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 25, 10

Conread position: 210-512
Cow position: chr3:49414672-49414391 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 210
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 24, 38

Conread position: 210-566
Cow position: chr3:80084424-80084068 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 59

Conread position: 215-572
Cow position: chr3:80929194-80928826 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 95

Conread position: 227-496
Cow position: chr3:18216994-18216723 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 188
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 45, 67

Conread position: 256-513
Cow position: chr3:46135092-46134841 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 180
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 125, 31

Conread position: 259-555
Cow position: chr3:2226897-2227180 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 211
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 119, 7

Conread position: 261-501
Cow position: chr3:82703334-82703575 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 178
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 75, 61

Conread position: 264-528
Cow position: chr3:56711835-56711565 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 0

Conread position: 279-567
Cow position: chr3:27634190-27633903 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 41

Conread position: 280-566
Cow position: chr3:64688383-64688092 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 206
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 67, 270

Conread position: 281-482
Cow position: chr3:42490643-42490435 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 166
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 66, 0

Conread position: 302-566
Cow position: chr3:18531501-18531755 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 181
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 27, 48

Conread position: 316-530
Cow position: chr3:6799118-6798889 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 163
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 34, 212

Conread position: 344-534
Cow position: chr3:9074455-9074267 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 135
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 43, 55

Conread position: 348-527
Cow position: chr3:14506021-14505842 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 129
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 36, 56

Conread position: 355-565
Cow position: chr3:43292161-43291959 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 149
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 38, 0

Conread position: 398-496
Cow position: chr3:24356485-24356582 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 85
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 56, 0

Conread position: 400-536
Cow position: chr3:75281626-75281491 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 115, 0

Conread position: 401-560
Cow position: chr3:77953568-77953406 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 127
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 60, 147

Conread position: 403-572
Cow position: chr3:45735089-45735254 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 134
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 46, 0

Conread position: 409-572
Cow position: chr3:32839992-32839834 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 127
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 40, 0

Conread position: 412-568
Cow position: chr3:64018678-64018832 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 120
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 131, 0

Conread position: 412-572
Cow position: chr3:77157287-77157443 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 127
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 131, 0

Conread position: 412-572
Cow position: chr3:83698018-83697858 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 152, 130

Conread position: 426-542
Cow position: chr3:42162010-42162126 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 92
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 436-572
Cow position: chr3:36538956-36538822 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 108
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 107, 0

Show alignments to all cow chromosomes.