Cow genome map
| Conread name: | rpigcf0_000927.y1 | 
| Conread position: | 1-568 | 
| Cow position: | chr3:42489745-42489189 (view UCSC Genome Browser custom track) | 
| Alignm length: | 579 | 
| Alignm identity: | 418 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 52, 63 | 
| Conread position: | 3-331 | 
| Cow position: | chr3:16886341-16886002 (view UCSC Genome Browser custom track) | 
| Alignm length: | 350 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 3.99931e-42 | 
| Alignm gaps (pig, cow): | 109, 60 | 
| Conread position: | 3-519 | 
| Cow position: | chr3:66649872-66649370 (view UCSC Genome Browser custom track) | 
| Alignm length: | 528 | 
| Alignm identity: | 342 | 
| Alignm E-value: | 1e-38 | 
| Alignm gaps (pig, cow): | 107, 43 | 
| Conread position: | 3-562 | 
| Cow position: | chr3:44254863-44254330 (view UCSC Genome Browser custom track) | 
| Alignm length: | 571 | 
| Alignm identity: | 380 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 111, 51 | 
| Conread position: | 3-572 | 
| Cow position: | chr3:84152887-84153432 (view UCSC Genome Browser custom track) | 
| Alignm length: | 573 | 
| Alignm identity: | 401 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 228, 51 | 
| Conread position: | 4-533 | 
| Cow position: | chr3:33468924-33468412 (view UCSC Genome Browser custom track) | 
| Alignm length: | 537 | 
| Alignm identity: | 374 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 190, 18 | 
| Conread position: | 5-240 | 
| Cow position: | chr3:6882876-6883109 (view UCSC Genome Browser custom track) | 
| Alignm length: | 243 | 
| Alignm identity: | 167 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 105, 45 | 
| Conread position: | 5-317 | 
| Cow position: | chr3:26532238-26531947 (view UCSC Genome Browser custom track) | 
| Alignm length: | 314 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 132, 24 | 
| Conread position: | 6-474 | 
| Cow position: | chr3:18459118-18458638 (view UCSC Genome Browser custom track) | 
| Alignm length: | 487 | 
| Alignm identity: | 334 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 43, 68 | 
| Conread position: | 9-515 | 
| Cow position: | chr3:42914003-42914490 (view UCSC Genome Browser custom track) | 
| Alignm length: | 522 | 
| Alignm identity: | 362 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 104, 10 | 
| Conread position: | 12-371 | 
| Cow position: | chr3:65581453-65581097 (view UCSC Genome Browser custom track) | 
| Alignm length: | 371 | 
| Alignm identity: | 269 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 41, 50 | 
| Conread position: | 12-458 | 
| Cow position: | chr3:45342708-45343153 (view UCSC Genome Browser custom track) | 
| Alignm length: | 463 | 
| Alignm identity: | 306 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 101, 13 | 
| Conread position: | 13-527 | 
| Cow position: | chr3:33327275-33327782 (view UCSC Genome Browser custom track) | 
| Alignm length: | 533 | 
| Alignm identity: | 364 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 7, 40 | 
| Conread position: | 14-376 | 
| Cow position: | chr3:32869704-32870071 (view UCSC Genome Browser custom track) | 
| Alignm length: | 378 | 
| Alignm identity: | 282 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 36, 50 | 
| Conread position: | 14-514 | 
| Cow position: | chr3:43007840-43007348 (view UCSC Genome Browser custom track) | 
| Alignm length: | 514 | 
| Alignm identity: | 372 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 17, 36 | 
| Conread position: | 16-369 | 
| Cow position: | chr3:39970310-39969952 (view UCSC Genome Browser custom track) | 
| Alignm length: | 368 | 
| Alignm identity: | 249 | 
| Alignm E-value: | 7e-36 | 
| Alignm gaps (pig, cow): | 34, 44 | 
| Conread position: | 19-328 | 
| Cow position: | chr3:20405183-20405471 (view UCSC Genome Browser custom track) | 
| Alignm length: | 313 | 
| Alignm identity: | 214 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 207, 40 | 
| Conread position: | 61-376 | 
| Cow position: | chr3:48275422-48275756 (view UCSC Genome Browser custom track) | 
| Alignm length: | 335 | 
| Alignm identity: | 217 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 48, 0 | 
| Conread position: | 71-379 | 
| Cow position: | chr3:58383596-58383892 (view UCSC Genome Browser custom track) | 
| Alignm length: | 313 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 156, 41 | 
| Conread position: | 73-572 | 
| Cow position: | chr3:73417140-73417631 (view UCSC Genome Browser custom track) | 
| Alignm length: | 511 | 
| Alignm identity: | 371 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 41, 66 | 
| Conread position: | 89-379 | 
| Cow position: | chr3:78946204-78945909 (view UCSC Genome Browser custom track) | 
| Alignm length: | 305 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 25, 88 | 
| Conread position: | 119-442 | 
| Cow position: | chr3:27274202-27274519 (view UCSC Genome Browser custom track) | 
| Alignm length: | 327 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 233, 37 | 
| Conread position: | 137-505 | 
| Cow position: | chr3:58130679-58131047 (view UCSC Genome Browser custom track) | 
| Alignm length: | 379 | 
| Alignm identity: | 271 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 192 | 
| Conread position: | 137-572 | 
| Cow position: | chr3:77467611-77468064 (view UCSC Genome Browser custom track) | 
| Alignm length: | 457 | 
| Alignm identity: | 332 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 50, 322 | 
| Conread position: | 144-521 | 
| Cow position: | chr3:74699709-74699314 (view UCSC Genome Browser custom track) | 
| Alignm length: | 397 | 
| Alignm identity: | 274 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 90, 280 | 
| Conread position: | 148-568 | 
| Cow position: | chr3:42594967-42594540 (view UCSC Genome Browser custom track) | 
| Alignm length: | 432 | 
| Alignm identity: | 317 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 11, 59 | 
| Conread position: | 149-508 | 
| Cow position: | chr3:23092297-23091921 (view UCSC Genome Browser custom track) | 
| Alignm length: | 380 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 1e-38 | 
| Alignm gaps (pig, cow): | 53, 274 | 
| Conread position: | 154-572 | 
| Cow position: | chr3:27347605-27347216 (view UCSC Genome Browser custom track) | 
| Alignm length: | 424 | 
| Alignm identity: | 296 | 
| Alignm E-value: | 3.99931e-42 | 
| Alignm gaps (pig, cow): | 31, 12 | 
| Conread position: | 155-484 | 
| Cow position: | chr3:56637363-56637695 (view UCSC Genome Browser custom track) | 
| Alignm length: | 338 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 76, 173 | 
| Conread position: | 158-566 | 
| Cow position: | chr3:73236470-73236876 (view UCSC Genome Browser custom track) | 
| Alignm length: | 420 | 
| Alignm identity: | 287 | 
| Alignm E-value: | 5.60519e-45 | 
| Alignm gaps (pig, cow): | 84, 46 | 
| Conread position: | 160-562 | 
| Cow position: | chr3:51598086-51598477 (view UCSC Genome Browser custom track) | 
| Alignm length: | 409 | 
| Alignm identity: | 283 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 71, 46 | 
| Conread position: | 164-505 | 
| Cow position: | chr3:78546387-78546063 (view UCSC Genome Browser custom track) | 
| Alignm length: | 348 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 67, 24 | 
| Conread position: | 164-527 | 
| Cow position: | chr3:66708365-66707994 (view UCSC Genome Browser custom track) | 
| Alignm length: | 374 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 1.00053e-42 | 
| Alignm gaps (pig, cow): | 63, 12 | 
| Conread position: | 164-572 | 
| Cow position: | chr3:52722291-52721893 (view UCSC Genome Browser custom track) | 
| Alignm length: | 413 | 
| Alignm identity: | 282 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 65, 126 | 
| Conread position: | 167-534 | 
| Cow position: | chr3:8753173-8753535 (view UCSC Genome Browser custom track) | 
| Alignm length: | 378 | 
| Alignm identity: | 273 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 64, 39 | 
| Conread position: | 168-515 | 
| Cow position: | chr3:58954010-58954347 (view UCSC Genome Browser custom track) | 
| Alignm length: | 356 | 
| Alignm identity: | 241 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 63, 38 | 
| Conread position: | 170-555 | 
| Cow position: | chr3:20471646-20471261 (view UCSC Genome Browser custom track) | 
| Alignm length: | 397 | 
| Alignm identity: | 270 | 
| Alignm E-value: | 4.00001e-40 | 
| Alignm gaps (pig, cow): | 61, 17 | 
| Conread position: | 170-572 | 
| Cow position: | chr3:40345112-40345525 (view UCSC Genome Browser custom track) | 
| Alignm length: | 418 | 
| Alignm identity: | 281 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 38, 93 | 
| Conread position: | 172-572 | 
| Cow position: | chr3:67044381-67043983 (view UCSC Genome Browser custom track) | 
| Alignm length: | 407 | 
| Alignm identity: | 297 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 59, 34 | 
| Conread position: | 173-518 | 
| Cow position: | chr3:68291281-68291621 (view UCSC Genome Browser custom track) | 
| Alignm length: | 354 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 5.60519e-45 | 
| Alignm gaps (pig, cow): | 58, 82 | 
| Conread position: | 174-534 | 
| Cow position: | chr3:37186552-37186905 (view UCSC Genome Browser custom track) | 
| Alignm length: | 367 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 57, 35 | 
| Conread position: | 174-572 | 
| Cow position: | chr3:16115289-16115693 (view UCSC Genome Browser custom track) | 
| Alignm length: | 423 | 
| Alignm identity: | 300 | 
| Alignm E-value: | 1.96182e-44 | 
| Alignm gaps (pig, cow): | 57, 18 | 
| Conread position: | 176-519 | 
| Cow position: | chr3:53588672-53588319 (view UCSC Genome Browser custom track) | 
| Alignm length: | 358 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 1.96182e-44 | 
| Alignm gaps (pig, cow): | 55, 85 | 
| Conread position: | 176-534 | 
| Cow position: | chr3:5420148-5419785 (view UCSC Genome Browser custom track) | 
| Alignm length: | 371 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 51, 168 | 
| Conread position: | 176-542 | 
| Cow position: | chr3:39554599-39554246 (view UCSC Genome Browser custom track) | 
| Alignm length: | 372 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 5.60519e-45 | 
| Alignm gaps (pig, cow): | 55, 30 | 
| Conread position: | 176-550 | 
| Cow position: | chr3:24531553-24531915 (view UCSC Genome Browser custom track) | 
| Alignm length: | 382 | 
| Alignm identity: | 280 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 55, 30 | 
| Conread position: | 176-572 | 
| Cow position: | chr3:58206733-58206334 (view UCSC Genome Browser custom track) | 
| Alignm length: | 406 | 
| Alignm identity: | 282 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 174 | 
| Conread position: | 177-572 | 
| Cow position: | chr3:55460782-55460383 (view UCSC Genome Browser custom track) | 
| Alignm length: | 407 | 
| Alignm identity: | 307 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 52, 193 | 
| Conread position: | 180-566 | 
| Cow position: | chr3:77448795-77449168 (view UCSC Genome Browser custom track) | 
| Alignm length: | 390 | 
| Alignm identity: | 266 | 
| Alignm E-value: | 6.02558e-44 | 
| Alignm gaps (pig, cow): | 12, 81 | 
| Conread position: | 181-372 | 
| Cow position: | chr3:17222421-17222227 (view UCSC Genome Browser custom track) | 
| Alignm length: | 200 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 46, 64 | 
| Conread position: | 181-379 | 
| Cow position: | chr3:17456546-17456342 (view UCSC Genome Browser custom track) | 
| Alignm length: | 207 | 
| Alignm identity: | 147 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 46, 166 | 
| Conread position: | 181-485 | 
| Cow position: | chr3:48370854-48371165 (view UCSC Genome Browser custom track) | 
| Alignm length: | 317 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 56, 168 | 
| Conread position: | 181-521 | 
| Cow position: | chr3:46094560-46094888 (view UCSC Genome Browser custom track) | 
| Alignm length: | 349 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 53, 39 | 
| Conread position: | 181-541 | 
| Cow position: | chr3:35511511-35511872 (view UCSC Genome Browser custom track) | 
| Alignm length: | 371 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 4.00001e-40 | 
| Alignm gaps (pig, cow): | 54, 36 | 
| Conread position: | 181-553 | 
| Cow position: | chr3:16622305-16621930 (view UCSC Genome Browser custom track) | 
| Alignm length: | 385 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 9e-38 | 
| Alignm gaps (pig, cow): | 50, 32 | 
| Conread position: | 181-564 | 
| Cow position: | chr3:70754088-70754470 (view UCSC Genome Browser custom track) | 
| Alignm length: | 394 | 
| Alignm identity: | 277 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 19, 173 | 
| Conread position: | 181-571 | 
| Cow position: | chr3:23477958-23478342 (view UCSC Genome Browser custom track) | 
| Alignm length: | 395 | 
| Alignm identity: | 303 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 166 | 
| Conread position: | 182-376 | 
| Cow position: | chr3:33633162-33632969 (view UCSC Genome Browser custom track) | 
| Alignm length: | 198 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 45, 7 | 
| Conread position: | 182-432 | 
| Cow position: | chr3:81473728-81473992 (view UCSC Genome Browser custom track) | 
| Alignm length: | 266 | 
| Alignm identity: | 193 | 
| Alignm E-value: | 7e-36 | 
| Alignm gaps (pig, cow): | 31, 122 | 
| Conread position: | 182-571 | 
| Cow position: | chr3:74849314-74848935 (view UCSC Genome Browser custom track) | 
| Alignm length: | 394 | 
| Alignm identity: | 291 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 49, 24 | 
| Conread position: | 183-508 | 
| Cow position: | chr3:41718116-41718446 (view UCSC Genome Browser custom track) | 
| Alignm length: | 342 | 
| Alignm identity: | 239 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 42, 11 | 
| Conread position: | 183-562 | 
| Cow position: | chr3:55445092-55445471 (view UCSC Genome Browser custom track) | 
| Alignm length: | 392 | 
| Alignm identity: | 282 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 45, 14 | 
| Conread position: | 187-534 | 
| Cow position: | chr3:11422476-11422818 (view UCSC Genome Browser custom track) | 
| Alignm length: | 355 | 
| Alignm identity: | 248 | 
| Alignm E-value: | 5.00264e-43 | 
| Alignm gaps (pig, cow): | 85, 158 | 
| Conread position: | 189-469 | 
| Cow position: | chr3:46013225-46012938 (view UCSC Genome Browser custom track) | 
| Alignm length: | 301 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 18, 150 | 
| Conread position: | 191-543 | 
| Cow position: | chr3:49337463-49337809 (view UCSC Genome Browser custom track) | 
| Alignm length: | 359 | 
| Alignm identity: | 261 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 43, 18 | 
| Conread position: | 191-572 | 
| Cow position: | chr3:32772965-32773318 (view UCSC Genome Browser custom track) | 
| Alignm length: | 392 | 
| Alignm identity: | 269 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 40, 18 | 
| Conread position: | 193-507 | 
| Cow position: | chr3:80655191-80655495 (view UCSC Genome Browser custom track) | 
| Alignm length: | 320 | 
| Alignm identity: | 234 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 133 | 
| Conread position: | 197-572 | 
| Cow position: | chr3:31287357-31286993 (view UCSC Genome Browser custom track) | 
| Alignm length: | 384 | 
| Alignm identity: | 279 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 43, 127 | 
| Conread position: | 201-572 | 
| Cow position: | chr3:3690980-3690612 (view UCSC Genome Browser custom track) | 
| Alignm length: | 382 | 
| Alignm identity: | 276 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 37, 60 | 
| Conread position: | 201-572 | 
| Cow position: | chr3:19689915-19689529 (view UCSC Genome Browser custom track) | 
| Alignm length: | 389 | 
| Alignm identity: | 287 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 359 | 
| Conread position: | 204-572 | 
| Cow position: | chr3:18352088-18351746 (view UCSC Genome Browser custom track) | 
| Alignm length: | 375 | 
| Alignm identity: | 257 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 25, 10 | 
| Conread position: | 210-512 | 
| Cow position: | chr3:49414672-49414391 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 24, 38 | 
| Conread position: | 210-566 | 
| Cow position: | chr3:80084424-80084068 (view UCSC Genome Browser custom track) | 
| Alignm length: | 368 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 21, 59 | 
| Conread position: | 215-572 | 
| Cow position: | chr3:80929194-80928826 (view UCSC Genome Browser custom track) | 
| Alignm length: | 375 | 
| Alignm identity: | 272 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 19, 95 | 
| Conread position: | 227-496 | 
| Cow position: | chr3:18216994-18216723 (view UCSC Genome Browser custom track) | 
| Alignm length: | 279 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 45, 67 | 
| Conread position: | 256-513 | 
| Cow position: | chr3:46135092-46134841 (view UCSC Genome Browser custom track) | 
| Alignm length: | 263 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 125, 31 | 
| Conread position: | 259-555 | 
| Cow position: | chr3:2226897-2227180 (view UCSC Genome Browser custom track) | 
| Alignm length: | 302 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 119, 7 | 
| Conread position: | 261-501 | 
| Cow position: | chr3:82703334-82703575 (view UCSC Genome Browser custom track) | 
| Alignm length: | 246 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 75, 61 | 
| Conread position: | 264-528 | 
| Cow position: | chr3:56711835-56711565 (view UCSC Genome Browser custom track) | 
| Alignm length: | 271 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 86, 0 | 
| Conread position: | 279-567 | 
| Cow position: | chr3:27634190-27633903 (view UCSC Genome Browser custom track) | 
| Alignm length: | 295 | 
| Alignm identity: | 217 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 70, 41 | 
| Conread position: | 280-566 | 
| Cow position: | chr3:64688383-64688092 (view UCSC Genome Browser custom track) | 
| Alignm length: | 294 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 4.00001e-40 | 
| Alignm gaps (pig, cow): | 67, 270 | 
| Conread position: | 281-482 | 
| Cow position: | chr3:42490643-42490435 (view UCSC Genome Browser custom track) | 
| Alignm length: | 209 | 
| Alignm identity: | 166 | 
| Alignm E-value: | 5.00264e-43 | 
| Alignm gaps (pig, cow): | 66, 0 | 
| Conread position: | 302-566 | 
| Cow position: | chr3:18531501-18531755 (view UCSC Genome Browser custom track) | 
| Alignm length: | 269 | 
| Alignm identity: | 181 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 27, 48 | 
| Conread position: | 316-530 | 
| Cow position: | chr3:6799118-6798889 (view UCSC Genome Browser custom track) | 
| Alignm length: | 231 | 
| Alignm identity: | 163 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 34, 212 | 
| Conread position: | 344-534 | 
| Cow position: | chr3:9074455-9074267 (view UCSC Genome Browser custom track) | 
| Alignm length: | 193 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 43, 55 | 
| Conread position: | 348-527 | 
| Cow position: | chr3:14506021-14505842 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 36, 56 | 
| Conread position: | 355-565 | 
| Cow position: | chr3:43292161-43291959 (view UCSC Genome Browser custom track) | 
| Alignm length: | 211 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 8e-27 | 
| Alignm gaps (pig, cow): | 38, 0 | 
| Conread position: | 398-496 | 
| Cow position: | chr3:24356485-24356582 (view UCSC Genome Browser custom track) | 
| Alignm length: | 99 | 
| Alignm identity: | 85 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 56, 0 | 
| Conread position: | 400-536 | 
| Cow position: | chr3:75281626-75281491 (view UCSC Genome Browser custom track) | 
| Alignm length: | 137 | 
| Alignm identity: | 106 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 115, 0 | 
| Conread position: | 401-560 | 
| Cow position: | chr3:77953568-77953406 (view UCSC Genome Browser custom track) | 
| Alignm length: | 165 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 60, 147 | 
| Conread position: | 403-572 | 
| Cow position: | chr3:45735089-45735254 (view UCSC Genome Browser custom track) | 
| Alignm length: | 170 | 
| Alignm identity: | 134 | 
| Alignm E-value: | 6e-34 | 
| Alignm gaps (pig, cow): | 46, 0 | 
| Conread position: | 409-572 | 
| Cow position: | chr3:32839992-32839834 (view UCSC Genome Browser custom track) | 
| Alignm length: | 164 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 40, 0 | 
| Conread position: | 412-568 | 
| Cow position: | chr3:64018678-64018832 (view UCSC Genome Browser custom track) | 
| Alignm length: | 157 | 
| Alignm identity: | 120 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 131, 0 | 
| Conread position: | 412-572 | 
| Cow position: | chr3:77157287-77157443 (view UCSC Genome Browser custom track) | 
| Alignm length: | 161 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 5e-32 | 
| Alignm gaps (pig, cow): | 131, 0 | 
| Conread position: | 412-572 | 
| Cow position: | chr3:83698018-83697858 (view UCSC Genome Browser custom track) | 
| Alignm length: | 163 | 
| Alignm identity: | 123 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 152, 130 | 
| Conread position: | 426-542 | 
| Cow position: | chr3:42162010-42162126 (view UCSC Genome Browser custom track) | 
| Alignm length: | 117 | 
| Alignm identity: | 92 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 436-572 | 
| Cow position: | chr3:36538956-36538822 (view UCSC Genome Browser custom track) | 
| Alignm length: | 137 | 
| Alignm identity: | 108 | 
| Alignm E-value: | 8e-27 | 
| Alignm gaps (pig, cow): | 107, 0 | 
Show alignments to all cow chromosomes.
