Cow genome map

Conread name: rpigcf0_000927.y1

Conread position: 1-332
Cow position: chr4:46151885-46151560 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 230
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 112, 52

Conread position: 2-519
Cow position: chr4:22115178-22115686 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 62

Conread position: 3-136
Cow position: chr4:5189407-5189277 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 108
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 50, 57

Conread position: 3-435
Cow position: chr4:21056776-21057191 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 296
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 227, 52

Conread position: 3-450
Cow position: chr4:3274975-3274541 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 310
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 107, 55

Conread position: 3-535
Cow position: chr4:21073582-21073059 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 362
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 47, 38

Conread position: 3-572
Cow position: chr4:39646289-39646799 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 22

Conread position: 5-505
Cow position: chr4:52225576-52226071 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 63

Conread position: 5-520
Cow position: chr4:36755313-36755823 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 45

Conread position: 6-439
Cow position: chr4:61190927-61190511 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 299
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 197, 56

Conread position: 12-326
Cow position: chr4:58687863-58687546 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 14

Conread position: 14-295
Cow position: chr4:28094877-28094594 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 51

Conread position: 14-458
Cow position: chr4:1034646-1035071 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 296
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 41, 50

Conread position: 14-572
Cow position: chr4:45115029-45114475 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 32

Conread position: 22-443
Cow position: chr4:51740133-51739703 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 300
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 88, 31

Conread position: 39-402
Cow position: chr4:13833003-13832642 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 241
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 23, 101

Conread position: 61-330
Cow position: chr4:44684531-44684265 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 189
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 167, 52

Conread position: 71-289
Cow position: chr4:34044129-34043899 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 180
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 41, 135

Conread position: 71-301
Cow position: chr4:62151334-62151570 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 168
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 39, 75

Conread position: 71-383
Cow position: chr4:48499482-48499782 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 224
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 39, 68

Conread position: 71-421
Cow position: chr4:9482598-9482227 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 352

Conread position: 71-527
Cow position: chr4:51783821-51784269 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 309
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 129, 37

Conread position: 74-562
Cow position: chr4:5623551-5623078 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 65

Conread position: 92-513
Cow position: chr4:3836930-3837351 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 289
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 22, 86

Conread position: 129-439
Cow position: chr4:46083210-46082887 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 228
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 9, 0

Conread position: 138-571
Cow position: chr4:6630595-6630161 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 218

Conread position: 140-522
Cow position: chr4:6792140-6792521 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 73

Conread position: 144-535
Cow position: chr4:32748899-32749292 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 37

Conread position: 146-526
Cow position: chr4:20279044-20279416 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 265
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 88, 60

Conread position: 148-534
Cow position: chr4:58858437-58858073 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 256
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 269, 44

Conread position: 157-527
Cow position: chr4:45235145-45234783 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 263
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 70, 89

Conread position: 158-520
Cow position: chr4:69509013-69509378 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 242
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 46, 167

Conread position: 162-558
Cow position: chr4:12697368-12697757 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 267
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 65, 44

Conread position: 166-376
Cow position: chr4:18489666-18489446 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 159
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 61, 0

Conread position: 168-376
Cow position: chr4:23599896-23600116 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 164
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 59, 186

Conread position: 168-377
Cow position: chr4:11872186-11871970 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 149
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 63, 0

Conread position: 168-572
Cow position: chr4:49741274-49741675 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 124

Conread position: 172-526
Cow position: chr4:28151259-28151617 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 251
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 59, 34

Conread position: 173-562
Cow position: chr4:9821887-9822265 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 70

Conread position: 174-543
Cow position: chr4:2614508-2614165 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 250
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 106, 31

Conread position: 176-515
Cow position: chr4:42638551-42638205 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 232
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 62, 107

Conread position: 181-534
Cow position: chr4:36813111-36813473 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 252
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 46, 144

Conread position: 181-572
Cow position: chr4:5189258-5188880 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 39

Conread position: 181-572
Cow position: chr4:17175906-17176281 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 9

Conread position: 181-572
Cow position: chr4:53763380-53762995 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 178

Conread position: 182-566
Cow position: chr4:51408225-51407851 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 92

Conread position: 182-566
Cow position: chr4:61271893-61271521 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 24

Conread position: 187-570
Cow position: chr4:58433466-58433088 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 171

Conread position: 189-561
Cow position: chr4:59333227-59332859 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 249
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 42, 86

Conread position: 191-566
Cow position: chr4:61191218-61191594 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 261
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 38, 18

Conread position: 193-484
Cow position: chr4:45240020-45240322 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 222
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 34, 119

Conread position: 193-572
Cow position: chr4:57652004-57652372 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 16

Conread position: 193-572
Cow position: chr4:59565291-59565665 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 41

Conread position: 196-525
Cow position: chr4:13406459-13406796 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 134

Conread position: 199-543
Cow position: chr4:9168895-9168560 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 249
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 32, 92

Conread position: 209-565
Cow position: chr4:3133038-3133381 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 249
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 17, 135

Conread position: 210-535
Cow position: chr4:58833450-58833121 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 244
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 21, 38

Conread position: 210-572
Cow position: chr4:52597714-52597335 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 99

Conread position: 213-571
Cow position: chr4:31587036-31586697 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 59

Conread position: 229-558
Cow position: chr4:61171693-61172017 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 231
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 44, 197

Conread position: 237-572
Cow position: chr4:47510815-47511154 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 312

Conread position: 248-572
Cow position: chr4:8597885-8597559 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 76

Conread position: 248-572
Cow position: chr4:21162473-21162792 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 40

Conread position: 271-522
Cow position: chr4:62618354-62618601 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 173
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 65, 21

Conread position: 271-572
Cow position: chr4:9649832-9650137 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 212
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 76, 195

Conread position: 284-539
Cow position: chr4:2597021-2596773 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 173
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 137, 50

Conread position: 284-572
Cow position: chr4:34043773-34043496 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 315-572
Cow position: chr4:41895524-41895782 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 174
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 67, 29

Conread position: 348-572
Cow position: chr4:41975808-41975584 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 53

Conread position: 360-572
Cow position: chr4:14564998-14564787 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 160
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 5, 141

Conread position: 398-572
Cow position: chr4:29222563-29222391 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 139
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 145, 0

Conread position: 401-543
Cow position: chr4:10613316-10613174 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 104
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 421-572
Cow position: chr4:29067660-29067512 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 117
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 21, 0

Conread position: 432-572
Cow position: chr4:20925988-20925852 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 120
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 99, 0

Conread position: 439-569
Cow position: chr4:57566486-57566360 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 101
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 76, 0

Show alignments to all cow chromosomes.