Cow genome map
Conread name: | rpigcf0_000927.y1 |
Conread position: | 1-332 |
Cow position: | chr4:46151885-46151560 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 230 |
Alignm E-value: | 7e-27 |
Alignm gaps (pig, cow): | 112, 52 |
Conread position: | 2-519 |
Cow position: | chr4:22115178-22115686 (view UCSC Genome Browser custom track) |
Alignm length: | 531 |
Alignm identity: | 364 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 54, 62 |
Conread position: | 3-136 |
Cow position: | chr4:5189407-5189277 (view UCSC Genome Browser custom track) |
Alignm length: | 137 |
Alignm identity: | 108 |
Alignm E-value: | 4e-22 |
Alignm gaps (pig, cow): | 50, 57 |
Conread position: | 3-435 |
Cow position: | chr4:21056776-21057191 (view UCSC Genome Browser custom track) |
Alignm length: | 441 |
Alignm identity: | 296 |
Alignm E-value: | 8.99999e-40 |
Alignm gaps (pig, cow): | 227, 52 |
Conread position: | 3-450 |
Cow position: | chr4:3274975-3274541 (view UCSC Genome Browser custom track) |
Alignm length: | 461 |
Alignm identity: | 310 |
Alignm E-value: | 2e-38 |
Alignm gaps (pig, cow): | 107, 55 |
Conread position: | 3-535 |
Cow position: | chr4:21073582-21073059 (view UCSC Genome Browser custom track) |
Alignm length: | 549 |
Alignm identity: | 362 |
Alignm E-value: | 9.94922e-44 |
Alignm gaps (pig, cow): | 47, 38 |
Conread position: | 3-572 |
Cow position: | chr4:39646289-39646799 (view UCSC Genome Browser custom track) |
Alignm length: | 571 |
Alignm identity: | 395 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 50, 22 |
Conread position: | 5-505 |
Cow position: | chr4:52225576-52226071 (view UCSC Genome Browser custom track) |
Alignm length: | 512 |
Alignm identity: | 347 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 63 |
Conread position: | 5-520 |
Cow position: | chr4:36755313-36755823 (view UCSC Genome Browser custom track) |
Alignm length: | 532 |
Alignm identity: | 372 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 105, 45 |
Conread position: | 6-439 |
Cow position: | chr4:61190927-61190511 (view UCSC Genome Browser custom track) |
Alignm length: | 447 |
Alignm identity: | 299 |
Alignm E-value: | 4e-33 |
Alignm gaps (pig, cow): | 197, 56 |
Conread position: | 12-326 |
Cow position: | chr4:58687863-58687546 (view UCSC Genome Browser custom track) |
Alignm length: | 326 |
Alignm identity: | 245 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 102, 14 |
Conread position: | 14-295 |
Cow position: | chr4:28094877-28094594 (view UCSC Genome Browser custom track) |
Alignm length: | 291 |
Alignm identity: | 217 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 13, 51 |
Conread position: | 14-458 |
Cow position: | chr4:1034646-1035071 (view UCSC Genome Browser custom track) |
Alignm length: | 455 |
Alignm identity: | 296 |
Alignm E-value: | 7e-28 |
Alignm gaps (pig, cow): | 41, 50 |
Conread position: | 14-572 |
Cow position: | chr4:45115029-45114475 (view UCSC Genome Browser custom track) |
Alignm length: | 568 |
Alignm identity: | 417 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 100, 32 |
Conread position: | 22-443 |
Cow position: | chr4:51740133-51739703 (view UCSC Genome Browser custom track) |
Alignm length: | 445 |
Alignm identity: | 300 |
Alignm E-value: | 7e-38 |
Alignm gaps (pig, cow): | 88, 31 |
Conread position: | 39-402 |
Cow position: | chr4:13833003-13832642 (view UCSC Genome Browser custom track) |
Alignm length: | 376 |
Alignm identity: | 241 |
Alignm E-value: | 4e-22 |
Alignm gaps (pig, cow): | 23, 101 |
Conread position: | 61-330 |
Cow position: | chr4:44684531-44684265 (view UCSC Genome Browser custom track) |
Alignm length: | 278 |
Alignm identity: | 189 |
Alignm E-value: | 2e-24 |
Alignm gaps (pig, cow): | 167, 52 |
Conread position: | 71-289 |
Cow position: | chr4:34044129-34043899 (view UCSC Genome Browser custom track) |
Alignm length: | 233 |
Alignm identity: | 180 |
Alignm E-value: | 8e-39 |
Alignm gaps (pig, cow): | 41, 135 |
Conread position: | 71-301 |
Cow position: | chr4:62151334-62151570 (view UCSC Genome Browser custom track) |
Alignm length: | 239 |
Alignm identity: | 168 |
Alignm E-value: | 8e-29 |
Alignm gaps (pig, cow): | 39, 75 |
Conread position: | 71-383 |
Cow position: | chr4:48499482-48499782 (view UCSC Genome Browser custom track) |
Alignm length: | 320 |
Alignm identity: | 224 |
Alignm E-value: | 1e-33 |
Alignm gaps (pig, cow): | 39, 68 |
Conread position: | 71-421 |
Cow position: | chr4:9482598-9482227 (view UCSC Genome Browser custom track) |
Alignm length: | 374 |
Alignm identity: | 267 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 62, 352 |
Conread position: | 71-527 |
Cow position: | chr4:51783821-51784269 (view UCSC Genome Browser custom track) |
Alignm length: | 468 |
Alignm identity: | 309 |
Alignm E-value: | 3e-39 |
Alignm gaps (pig, cow): | 129, 37 |
Conread position: | 74-562 |
Cow position: | chr4:5623551-5623078 (view UCSC Genome Browser custom track) |
Alignm length: | 494 |
Alignm identity: | 367 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 40, 65 |
Conread position: | 92-513 |
Cow position: | chr4:3836930-3837351 (view UCSC Genome Browser custom track) |
Alignm length: | 432 |
Alignm identity: | 289 |
Alignm E-value: | 9.80909e-45 |
Alignm gaps (pig, cow): | 22, 86 |
Conread position: | 129-439 |
Cow position: | chr4:46083210-46082887 (view UCSC Genome Browser custom track) |
Alignm length: | 324 |
Alignm identity: | 228 |
Alignm E-value: | 9.94922e-44 |
Alignm gaps (pig, cow): | 9, 0 |
Conread position: | 138-571 |
Cow position: | chr4:6630595-6630161 (view UCSC Genome Browser custom track) |
Alignm length: | 441 |
Alignm identity: | 327 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 93, 218 |
Conread position: | 140-522 |
Cow position: | chr4:6792140-6792521 (view UCSC Genome Browser custom track) |
Alignm length: | 390 |
Alignm identity: | 271 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 91, 73 |
Conread position: | 144-535 |
Cow position: | chr4:32748899-32749292 (view UCSC Genome Browser custom track) |
Alignm length: | 407 |
Alignm identity: | 323 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 82, 37 |
Conread position: | 146-526 |
Cow position: | chr4:20279044-20279416 (view UCSC Genome Browser custom track) |
Alignm length: | 388 |
Alignm identity: | 265 |
Alignm E-value: | 3.9937e-43 |
Alignm gaps (pig, cow): | 88, 60 |
Conread position: | 148-534 |
Cow position: | chr4:58858437-58858073 (view UCSC Genome Browser custom track) |
Alignm length: | 389 |
Alignm identity: | 256 |
Alignm E-value: | 3e-31 |
Alignm gaps (pig, cow): | 269, 44 |
Conread position: | 157-527 |
Cow position: | chr4:45235145-45234783 (view UCSC Genome Browser custom track) |
Alignm length: | 380 |
Alignm identity: | 263 |
Alignm E-value: | 9.99967e-42 |
Alignm gaps (pig, cow): | 70, 89 |
Conread position: | 158-520 |
Cow position: | chr4:69509013-69509378 (view UCSC Genome Browser custom track) |
Alignm length: | 371 |
Alignm identity: | 242 |
Alignm E-value: | 5e-34 |
Alignm gaps (pig, cow): | 46, 167 |
Conread position: | 162-558 |
Cow position: | chr4:12697368-12697757 (view UCSC Genome Browser custom track) |
Alignm length: | 402 |
Alignm identity: | 267 |
Alignm E-value: | 8e-39 |
Alignm gaps (pig, cow): | 65, 44 |
Conread position: | 166-376 |
Cow position: | chr4:18489666-18489446 (view UCSC Genome Browser custom track) |
Alignm length: | 221 |
Alignm identity: | 159 |
Alignm E-value: | 3e-29 |
Alignm gaps (pig, cow): | 61, 0 |
Conread position: | 168-376 |
Cow position: | chr4:23599896-23600116 (view UCSC Genome Browser custom track) |
Alignm length: | 222 |
Alignm identity: | 164 |
Alignm E-value: | 9e-30 |
Alignm gaps (pig, cow): | 59, 186 |
Conread position: | 168-377 |
Cow position: | chr4:11872186-11871970 (view UCSC Genome Browser custom track) |
Alignm length: | 217 |
Alignm identity: | 149 |
Alignm E-value: | 5e-24 |
Alignm gaps (pig, cow): | 63, 0 |
Conread position: | 168-572 |
Cow position: | chr4:49741274-49741675 (view UCSC Genome Browser custom track) |
Alignm length: | 415 |
Alignm identity: | 307 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 67, 124 |
Conread position: | 172-526 |
Cow position: | chr4:28151259-28151617 (view UCSC Genome Browser custom track) |
Alignm length: | 371 |
Alignm identity: | 251 |
Alignm E-value: | 1e-31 |
Alignm gaps (pig, cow): | 59, 34 |
Conread position: | 173-562 |
Cow position: | chr4:9821887-9822265 (view UCSC Genome Browser custom track) |
Alignm length: | 399 |
Alignm identity: | 290 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 70 |
Conread position: | 174-543 |
Cow position: | chr4:2614508-2614165 (view UCSC Genome Browser custom track) |
Alignm length: | 372 |
Alignm identity: | 250 |
Alignm E-value: | 3e-29 |
Alignm gaps (pig, cow): | 106, 31 |
Conread position: | 176-515 |
Cow position: | chr4:42638551-42638205 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 232 |
Alignm E-value: | 1e-33 |
Alignm gaps (pig, cow): | 62, 107 |
Conread position: | 181-534 |
Cow position: | chr4:36813111-36813473 (view UCSC Genome Browser custom track) |
Alignm length: | 368 |
Alignm identity: | 252 |
Alignm E-value: | 3e-39 |
Alignm gaps (pig, cow): | 46, 144 |
Conread position: | 181-572 |
Cow position: | chr4:5189258-5188880 (view UCSC Genome Browser custom track) |
Alignm length: | 396 |
Alignm identity: | 294 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 91, 39 |
Conread position: | 181-572 |
Cow position: | chr4:17175906-17176281 (view UCSC Genome Browser custom track) |
Alignm length: | 400 |
Alignm identity: | 287 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 21, 9 |
Conread position: | 181-572 |
Cow position: | chr4:53763380-53762995 (view UCSC Genome Browser custom track) |
Alignm length: | 400 |
Alignm identity: | 295 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 24, 178 |
Conread position: | 182-566 |
Cow position: | chr4:51408225-51407851 (view UCSC Genome Browser custom track) |
Alignm length: | 395 |
Alignm identity: | 283 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 23, 92 |
Conread position: | 182-566 |
Cow position: | chr4:61271893-61271521 (view UCSC Genome Browser custom track) |
Alignm length: | 396 |
Alignm identity: | 280 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 24 |
Conread position: | 187-570 |
Cow position: | chr4:58433466-58433088 (view UCSC Genome Browser custom track) |
Alignm length: | 390 |
Alignm identity: | 285 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 35, 171 |
Conread position: | 189-561 |
Cow position: | chr4:59333227-59332859 (view UCSC Genome Browser custom track) |
Alignm length: | 380 |
Alignm identity: | 249 |
Alignm E-value: | 4e-33 |
Alignm gaps (pig, cow): | 42, 86 |
Conread position: | 191-566 |
Cow position: | chr4:61191218-61191594 (view UCSC Genome Browser custom track) |
Alignm length: | 390 |
Alignm identity: | 261 |
Alignm E-value: | 3e-31 |
Alignm gaps (pig, cow): | 38, 18 |
Conread position: | 193-484 |
Cow position: | chr4:45240020-45240322 (view UCSC Genome Browser custom track) |
Alignm length: | 305 |
Alignm identity: | 222 |
Alignm E-value: | 9.80909e-45 |
Alignm gaps (pig, cow): | 34, 119 |
Conread position: | 193-572 |
Cow position: | chr4:57652004-57652372 (view UCSC Genome Browser custom track) |
Alignm length: | 385 |
Alignm identity: | 283 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 39, 16 |
Conread position: | 193-572 |
Cow position: | chr4:59565291-59565665 (view UCSC Genome Browser custom track) |
Alignm length: | 391 |
Alignm identity: | 286 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 83, 41 |
Conread position: | 196-525 |
Cow position: | chr4:13406459-13406796 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 244 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 5, 134 |
Conread position: | 199-543 |
Cow position: | chr4:9168895-9168560 (view UCSC Genome Browser custom track) |
Alignm length: | 353 |
Alignm identity: | 249 |
Alignm E-value: | 9.99995e-41 |
Alignm gaps (pig, cow): | 32, 92 |
Conread position: | 209-565 |
Cow position: | chr4:3133038-3133381 (view UCSC Genome Browser custom track) |
Alignm length: | 363 |
Alignm identity: | 249 |
Alignm E-value: | 2e-36 |
Alignm gaps (pig, cow): | 17, 135 |
Conread position: | 210-535 |
Cow position: | chr4:58833450-58833121 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 244 |
Alignm E-value: | 3e-40 |
Alignm gaps (pig, cow): | 21, 38 |
Conread position: | 210-572 |
Cow position: | chr4:52597714-52597335 (view UCSC Genome Browser custom track) |
Alignm length: | 384 |
Alignm identity: | 272 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 99 |
Conread position: | 213-571 |
Cow position: | chr4:31587036-31586697 (view UCSC Genome Browser custom track) |
Alignm length: | 363 |
Alignm identity: | 266 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 21, 59 |
Conread position: | 229-558 |
Cow position: | chr4:61171693-61172017 (view UCSC Genome Browser custom track) |
Alignm length: | 337 |
Alignm identity: | 231 |
Alignm E-value: | 6e-37 |
Alignm gaps (pig, cow): | 44, 197 |
Conread position: | 237-572 |
Cow position: | chr4:47510815-47511154 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 245 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 35, 312 |
Conread position: | 248-572 |
Cow position: | chr4:8597885-8597559 (view UCSC Genome Browser custom track) |
Alignm length: | 334 |
Alignm identity: | 248 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 76 |
Conread position: | 248-572 |
Cow position: | chr4:21162473-21162792 (view UCSC Genome Browser custom track) |
Alignm length: | 334 |
Alignm identity: | 244 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 12, 40 |
Conread position: | 271-522 |
Cow position: | chr4:62618354-62618601 (view UCSC Genome Browser custom track) |
Alignm length: | 256 |
Alignm identity: | 173 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 65, 21 |
Conread position: | 271-572 |
Cow position: | chr4:9649832-9650137 (view UCSC Genome Browser custom track) |
Alignm length: | 308 |
Alignm identity: | 212 |
Alignm E-value: | 3e-39 |
Alignm gaps (pig, cow): | 76, 195 |
Conread position: | 284-539 |
Cow position: | chr4:2597021-2596773 (view UCSC Genome Browser custom track) |
Alignm length: | 257 |
Alignm identity: | 173 |
Alignm E-value: | 2e-26 |
Alignm gaps (pig, cow): | 137, 50 |
Conread position: | 284-572 |
Cow position: | chr4:34043773-34043496 (view UCSC Genome Browser custom track) |
Alignm length: | 289 |
Alignm identity: | 220 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 0 |
Conread position: | 315-572 |
Cow position: | chr4:41895524-41895782 (view UCSC Genome Browser custom track) |
Alignm length: | 263 |
Alignm identity: | 174 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 67, 29 |
Conread position: | 348-572 |
Cow position: | chr4:41975808-41975584 (view UCSC Genome Browser custom track) |
Alignm length: | 228 |
Alignm identity: | 180 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 35, 53 |
Conread position: | 360-572 |
Cow position: | chr4:14564998-14564787 (view UCSC Genome Browser custom track) |
Alignm length: | 218 |
Alignm identity: | 160 |
Alignm E-value: | 9e-30 |
Alignm gaps (pig, cow): | 5, 141 |
Conread position: | 398-572 |
Cow position: | chr4:29222563-29222391 (view UCSC Genome Browser custom track) |
Alignm length: | 175 |
Alignm identity: | 139 |
Alignm E-value: | 2e-38 |
Alignm gaps (pig, cow): | 145, 0 |
Conread position: | 401-543 |
Cow position: | chr4:10613316-10613174 (view UCSC Genome Browser custom track) |
Alignm length: | 143 |
Alignm identity: | 104 |
Alignm E-value: | 1e-21 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 421-572 |
Cow position: | chr4:29067660-29067512 (view UCSC Genome Browser custom track) |
Alignm length: | 152 |
Alignm identity: | 117 |
Alignm E-value: | 2e-27 |
Alignm gaps (pig, cow): | 21, 0 |
Conread position: | 432-572 |
Cow position: | chr4:20925988-20925852 (view UCSC Genome Browser custom track) |
Alignm length: | 141 |
Alignm identity: | 120 |
Alignm E-value: | 2e-34 |
Alignm gaps (pig, cow): | 99, 0 |
Conread position: | 439-569 |
Cow position: | chr4:57566486-57566360 (view UCSC Genome Browser custom track) |
Alignm length: | 131 |
Alignm identity: | 101 |
Alignm E-value: | 1e-21 |
Alignm gaps (pig, cow): | 76, 0 |
Show alignments to all cow chromosomes.