Cow genome map


           Conread name:
           rpigcf0_000927.y1
        

               Conread position:
               1-333
               

               Cow position:
               
               

               Alignm length:
               345
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 24
               

               Conread position:
               3-327
               

               Cow position:
               
               

               Alignm length:
               330
               

               Alignm identity:
               218
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               108, 35
               

               Conread position:
               3-331
               

               Cow position:
               
               

               Alignm length:
               330
               

               Alignm identity:
               223
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               277, 46
               

               Conread position:
               3-442
               

               Cow position:
               
               

               Alignm length:
               468
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 349
               

               Conread position:
               3-528
               

               Cow position:
               
               

               Alignm length:
               543
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               197, 38
               

               Conread position:
               3-533
               

               Cow position:
               
               

               Alignm length:
               578
               

               Alignm identity:
               401
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 226
               

               Conread position:
               3-571
               

               Cow position:
               
               

               Alignm length:
               585
               

               Alignm identity:
               405
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               228, 54
               

               Conread position:
               3-572
               

               Cow position:
               
               

               Alignm length:
               587
               

               Alignm identity:
               403
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               115, 38
               

               Conread position:
               4-335
               

               Cow position:
               
               

               Alignm length:
               338
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 54
               

               Conread position:
               5-527
               

               Cow position:
               
               

               Alignm length:
               531
               

               Alignm identity:
               350
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               109, 33
               

               Conread position:
               6-170
               

               Cow position:
               
               

               Alignm length:
               167
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               44, 64
               

               Conread position:
               6-514
               

               Cow position:
               
               

               Alignm length:
               531
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               224, 44
               

               Conread position:
               8-375
               

               Cow position:
               
               

               Alignm length:
               378
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 47
               

               Conread position:
               12-514
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               344
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               101, 40
               

               Conread position:
               14-572
               

               Cow position:
               
               

               Alignm length:
               588
               

               Alignm identity:
               406
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 51
               

               Conread position:
               15-159
               

               Cow position:
               
               

               Alignm length:
               149
               

               Alignm identity:
               115
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               40, 49
               

               Conread position:
               15-351
               

               Cow position:
               
               

               Alignm length:
               352
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 37
               

               Conread position:
               19-502
               

               Cow position:
               
               

               Alignm length:
               492
               

               Alignm identity:
               322
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               37, 19
               

               Conread position:
               20-289
               

               Cow position:
               
               

               Alignm length:
               281
               

               Alignm identity:
               197
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               93, 45
               

               Conread position:
               21-333
               

               Cow position:
               
               

               Alignm length:
               327
               

               Alignm identity:
               227
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               34, 45
               

               Conread position:
               48-515
               

               Cow position:
               
               

               Alignm length:
               472
               

               Alignm identity:
               308
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               186, 13
               

               Conread position:
               56-306
               

               Cow position:
               
               

               Alignm length:
               254
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               55, 78
               

               Conread position:
               71-178
               

               Cow position:
               
               

               Alignm length:
               110
               

               Alignm identity:
               89
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               71-336
               

               Cow position:
               
               

               Alignm length:
               272
               

               Alignm identity:
               192
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               65, 14
               

               Conread position:
               71-351
               

               Cow position:
               
               

               Alignm length:
               290
               

               Alignm identity:
               201
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               39, 207
               

               Conread position:
               71-443
               

               Cow position:
               
               

               Alignm length:
               398
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 347
               

               Conread position:
               71-458
               

               Cow position:
               
               

               Alignm length:
               411
               

               Alignm identity:
               285
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               39, 188
               

               Conread position:
               71-534
               

               Cow position:
               
               

               Alignm length:
               471
               

               Alignm identity:
               301
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               39, 20
               

               Conread position:
               72-473
               

               Cow position:
               
               

               Alignm length:
               425
               

               Alignm identity:
               279
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               61, 33
               

               Conread position:
               148-492
               

               Cow position:
               
               

               Alignm length:
               358
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 266
               

               Conread position:
               158-527
               

               Cow position:
               
               

               Alignm length:
               378
               

               Alignm identity:
               251
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               68, 48
               

               Conread position:
               160-525
               

               Cow position:
               
               

               Alignm length:
               373
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 23
               

               Conread position:
               160-534
               

               Cow position:
               
               

               Alignm length:
               381
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 6
               

               Conread position:
               160-572
               

               Cow position:
               
               

               Alignm length:
               431
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 46
               

               Conread position:
               166-480
               

               Cow position:
               
               

               Alignm length:
               321
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 47
               

               Conread position:
               166-568
               

               Cow position:
               
               

               Alignm length:
               420
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 222
               

               Conread position:
               167-530
               

               Cow position:
               
               

               Alignm length:
               371
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 81
               

               Conread position:
               170-566
               

               Cow position:
               
               

               Alignm length:
               399
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 27
               

               Conread position:
               170-571
               

               Cow position:
               
               

               Alignm length:
               417
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 185
               

               Conread position:
               171-543
               

               Cow position:
               
               

               Alignm length:
               380
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 83
               

               Conread position:
               174-458
               

               Cow position:
               
               

               Alignm length:
               293
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               33, 79
               

               Conread position:
               174-572
               

               Cow position:
               
               

               Alignm length:
               416
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 11
               

               Conread position:
               175-527
               

               Cow position:
               
               

               Alignm length:
               370
               

               Alignm identity:
               245
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               25, 232
               

               Conread position:
               176-376
               

               Cow position:
               
               

               Alignm length:
               209
               

               Alignm identity:
               146
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               51, 15
               

               Conread position:
               176-492
               

               Cow position:
               
               

               Alignm length:
               332
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 33
               

               Conread position:
               176-509
               

               Cow position:
               
               

               Alignm length:
               344
               

               Alignm identity:
               244
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               51, 30
               

               Conread position:
               176-526
               

               Cow position:
               
               

               Alignm length:
               355
               

               Alignm identity:
               240
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               55, 30
               

               Conread position:
               176-571
               

               Cow position:
               
               

               Alignm length:
               419
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 293
               

               Conread position:
               176-572
               

               Cow position:
               
               

               Alignm length:
               416
               

               Alignm identity:
               288
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               48, 109
               

               Conread position:
               176-572
               

               Cow position:
               
               

               Alignm length:
               406
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 150
               

               Conread position:
               181-375
               

               Cow position:
               
               

               Alignm length:
               203
               

               Alignm identity:
               160
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               50, 146
               

               Conread position:
               181-562
               

               Cow position:
               
               

               Alignm length:
               391
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 125
               

               Conread position:
               181-572
               

               Cow position:
               
               

               Alignm length:
               400
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 150
               

               Conread position:
               182-507
               

               Cow position:
               
               

               Alignm length:
               337
               

               Alignm identity:
               239
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               47, 162
               

               Conread position:
               183-412
               

               Cow position:
               
               

               Alignm length:
               245
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               44, 26
               

               Conread position:
               183-484
               

               Cow position:
               
               

               Alignm length:
               320
               

               Alignm identity:
               228
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               28, 165
               

               Conread position:
               185-566
               

               Cow position:
               
               

               Alignm length:
               392
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 21
               

               Conread position:
               187-530
               

               Cow position:
               
               

               Alignm length:
               355
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 107
               

               Conread position:
               190-527
               

               Cow position:
               
               

               Alignm length:
               352
               

               Alignm identity:
               234
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               12, 127
               

               Conread position:
               191-522
               

               Cow position:
               
               

               Alignm length:
               341
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 88
               

               Conread position:
               200-572
               

               Cow position:
               
               

               Alignm length:
               381
               

               Alignm identity:
               269
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               31, 91
               

               Conread position:
               214-458
               

               Cow position:
               
               

               Alignm length:
               260
               

               Alignm identity:
               189
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               227-508
               

               Cow position:
               
               

               Alignm length:
               296
               

               Alignm identity:
               195
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               45, 182
               

               Conread position:
               233-530
               

               Cow position:
               
               

               Alignm length:
               304
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 60
               

               Conread position:
               246-572
               

               Cow position:
               
               

               Alignm length:
               330
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 30
               

               Conread position:
               248-520
               

               Cow position:
               
               

               Alignm length:
               282
               

               Alignm identity:
               194
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               26, 92
               

               Conread position:
               252-561
               

               Cow position:
               
               

               Alignm length:
               314
               

               Alignm identity:
               214
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               20, 72
               

               Conread position:
               253-525
               

               Cow position:
               
               

               Alignm length:
               280
               

               Alignm identity:
               195
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               21, 73
               

               Conread position:
               269-572
               

               Cow position:
               
               

               Alignm length:
               305
               

               Alignm identity:
               206
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               116, 40
               

               Conread position:
               275-572
               

               Cow position:
               
               

               Alignm length:
               304
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 46
               

               Conread position:
               275-572
               

               Cow position:
               
               

               Alignm length:
               300
               

               Alignm identity:
               220
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               130, 67
               

               Conread position:
               313-572
               

               Cow position:
               
               

               Alignm length:
               263
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               68, 31
               

               Conread position:
               320-572
               

               Cow position:
               
               

               Alignm length:
               259
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 14
               

               Conread position:
               326-543
               

               Cow position:
               
               

               Alignm length:
               219
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               24, 44
               

               Conread position:
               326-571
               

               Cow position:
               
               

               Alignm length:
               250
               

               Alignm identity:
               186
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               28, 114
               

               Conread position:
               343-572
               

               Cow position:
               
               

               Alignm length:
               234
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               18, 204
               

               Conread position:
               344-567
               

               Cow position:
               
               

               Alignm length:
               225
               

               Alignm identity:
               158
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               51, 37
               

               Conread position:
               351-572
               

               Cow position:
               
               

               Alignm length:
               225
               

               Alignm identity:
               156
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               113, 195
               

               Conread position:
               353-572
               

               Cow position:
               
               

               Alignm length:
               224
               

               Alignm identity:
               155
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               21, 90
               

               Conread position:
               382-543
               

               Cow position:
               
               

               Alignm length:
               163
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               26, 61
               

               Conread position:
               395-567
               

               Cow position:
               
               

               Alignm length:
               174
               

               Alignm identity:
               133
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               12, 18
               

               Conread position:
               400-571
               

               Cow position:
               
               

               Alignm length:
               172
               

               Alignm identity:
               137
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               86, 0
               

               Conread position:
               403-572
               

               Cow position:
               
               

               Alignm length:
               170
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               415-572
               

               Cow position:
               
               

               Alignm length:
               158
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               108, 0
               
Show alignments to all cow chromosomes.