Cow genome map
| Conread name: | rpigcf0_000927.y1 |
| Conread position: | 1-333 |
| Cow position: | chr5:28229752-28230081 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 24 |
| Conread position: | 3-327 |
| Cow position: | chr5:50227091-50227400 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 108, 35 |
| Conread position: | 3-331 |
| Cow position: | chr5:47082773-47083079 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 277, 46 |
| Conread position: | 3-442 |
| Cow position: | chr5:9499517-9499067 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 349 |
| Conread position: | 3-528 |
| Cow position: | chr5:34232350-34232875 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 38 |
| Conread position: | 3-533 |
| Cow position: | chr5:50900472-50901037 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 226 |
| Conread position: | 3-571 |
| Cow position: | chr5:25226040-25225476 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 54 |
| Conread position: | 3-572 |
| Cow position: | chr5:51951977-51952545 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 38 |
| Conread position: | 4-335 |
| Cow position: | chr5:68480830-68481152 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 54 |
| Conread position: | 5-527 |
| Cow position: | chr5:48574150-48573653 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 350 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 109, 33 |
| Conread position: | 6-170 |
| Cow position: | chr5:36406799-36406961 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 44, 64 |
| Conread position: | 6-514 |
| Cow position: | chr5:23179689-23180199 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 44 |
| Conread position: | 8-375 |
| Cow position: | chr5:55088747-55089110 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 47 |
| Conread position: | 12-514 |
| Cow position: | chr5:54556835-54557344 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 344 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 101, 40 |
| Conread position: | 14-572 |
| Cow position: | chr5:52437743-52438313 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 51 |
| Conread position: | 15-159 |
| Cow position: | chr5:39242715-39242574 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 40, 49 |
| Conread position: | 15-351 |
| Cow position: | chr5:15317029-15317369 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 37 |
| Conread position: | 19-502 |
| Cow position: | chr5:46797868-46798343 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 322 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 37, 19 |
| Conread position: | 20-289 |
| Cow position: | chr5:15455482-15455752 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 93, 45 |
| Conread position: | 21-333 |
| Cow position: | chr5:1460811-1460496 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 34, 45 |
| Conread position: | 48-515 |
| Cow position: | chr5:35708708-35708274 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 308 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 186, 13 |
| Conread position: | 56-306 |
| Cow position: | chr5:41945580-41945337 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 55, 78 |
| Conread position: | 71-178 |
| Cow position: | chr5:24643132-24643023 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 71-336 |
| Cow position: | chr5:9498050-9498313 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 65, 14 |
| Conread position: | 71-351 |
| Cow position: | chr5:66296896-66297182 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 39, 207 |
| Conread position: | 71-443 |
| Cow position: | chr5:37714250-37713855 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 347 |
| Conread position: | 71-458 |
| Cow position: | chr5:34300574-34300973 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 285 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 39, 188 |
| Conread position: | 71-534 |
| Cow position: | chr5:3442128-3442574 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 301 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 39, 20 |
| Conread position: | 72-473 |
| Cow position: | chr5:58144952-58144532 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 279 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 61, 33 |
| Conread position: | 148-492 |
| Cow position: | chr5:9234342-9233997 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 266 |
| Conread position: | 158-527 |
| Cow position: | chr5:35603734-35604093 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 251 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 68, 48 |
| Conread position: | 160-525 |
| Cow position: | chr5:39695408-39695772 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 23 |
| Conread position: | 160-534 |
| Cow position: | chr5:41598945-41598583 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 6 |
| Conread position: | 160-572 |
| Cow position: | chr5:23234209-23234629 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 46 |
| Conread position: | 166-480 |
| Cow position: | chr5:26099613-26099302 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 47 |
| Conread position: | 166-568 |
| Cow position: | chr5:61030472-61030056 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 222 |
| Conread position: | 167-530 |
| Cow position: | chr5:21167368-21167006 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 81 |
| Conread position: | 170-566 |
| Cow position: | chr5:23647245-23646857 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 27 |
| Conread position: | 170-571 |
| Cow position: | chr5:26561913-26562306 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 185 |
| Conread position: | 171-543 |
| Cow position: | chr5:25927930-25927556 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 83 |
| Conread position: | 174-458 |
| Cow position: | chr5:45940842-45940555 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 33, 79 |
| Conread position: | 174-572 |
| Cow position: | chr5:23753461-23753056 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 11 |
| Conread position: | 175-527 |
| Cow position: | chr5:34183983-34184346 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 245 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 25, 232 |
| Conread position: | 176-376 |
| Cow position: | chr5:65941486-65941280 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 51, 15 |
| Conread position: | 176-492 |
| Cow position: | chr5:57126782-57127102 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 33 |
| Conread position: | 176-509 |
| Cow position: | chr5:15088954-15089283 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 244 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 51, 30 |
| Conread position: | 176-526 |
| Cow position: | chr5:59303501-59303159 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 55, 30 |
| Conread position: | 176-571 |
| Cow position: | chr5:15882714-15882301 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 293 |
| Conread position: | 176-572 |
| Cow position: | chr5:31913108-31913509 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 288 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 48, 109 |
| Conread position: | 176-572 |
| Cow position: | chr5:51076878-51076479 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 150 |
| Conread position: | 181-375 |
| Cow position: | chr5:27690287-27690088 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 50, 146 |
| Conread position: | 181-562 |
| Cow position: | chr5:14832836-14832459 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 125 |
| Conread position: | 181-572 |
| Cow position: | chr5:48224804-48224416 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 150 |
| Conread position: | 182-507 |
| Cow position: | chr5:328409-328086 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 239 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 47, 162 |
| Conread position: | 183-412 |
| Cow position: | chr5:39710613-39710852 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 44, 26 |
| Conread position: | 183-484 |
| Cow position: | chr5:42096394-42096702 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 28, 165 |
| Conread position: | 185-566 |
| Cow position: | chr5:37425519-37425903 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 21 |
| Conread position: | 187-530 |
| Cow position: | chr5:54111696-54112039 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 107 |
| Conread position: | 190-527 |
| Cow position: | chr5:39442073-39442420 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 234 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 12, 127 |
| Conread position: | 191-522 |
| Cow position: | chr5:27904195-27904527 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 88 |
| Conread position: | 200-572 |
| Cow position: | chr5:62579872-62579524 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 269 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 31, 91 |
| Conread position: | 214-458 |
| Cow position: | chr5:27492278-27492537 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 227-508 |
| Cow position: | chr5:36486306-36486598 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 45, 182 |
| Conread position: | 233-530 |
| Cow position: | chr5:34167787-34168089 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 60 |
| Conread position: | 246-572 |
| Cow position: | chr5:34218418-34218103 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 30 |
| Conread position: | 248-520 |
| Cow position: | chr5:54089880-54090152 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 194 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 26, 92 |
| Conread position: | 252-561 |
| Cow position: | chr5:40270889-40271182 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 20, 72 |
| Conread position: | 253-525 |
| Cow position: | chr5:37068738-37069004 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 21, 73 |
| Conread position: | 269-572 |
| Cow position: | chr5:27175746-27176028 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 116, 40 |
| Conread position: | 275-572 |
| Cow position: | chr5:34483666-34483367 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 46 |
| Conread position: | 275-572 |
| Cow position: | chr5:45912413-45912133 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 220 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 130, 67 |
| Conread position: | 313-572 |
| Cow position: | chr5:37047960-37048216 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 68, 31 |
| Conread position: | 320-572 |
| Cow position: | chr5:60968319-60968574 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 14 |
| Conread position: | 326-543 |
| Cow position: | chr5:19300506-19300297 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 24, 44 |
| Conread position: | 326-571 |
| Cow position: | chr5:1305314-1305074 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 28, 114 |
| Conread position: | 343-572 |
| Cow position: | chr5:364658-364430 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 18, 204 |
| Conread position: | 344-567 |
| Cow position: | chr5:61017361-61017144 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 51, 37 |
| Conread position: | 351-572 |
| Cow position: | chr5:63159992-63160214 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 113, 195 |
| Conread position: | 353-572 |
| Cow position: | chr5:59072971-59073191 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 21, 90 |
| Conread position: | 382-543 |
| Cow position: | chr5:33986208-33986049 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 26, 61 |
| Conread position: | 395-567 |
| Cow position: | chr5:10786246-10786078 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 12, 18 |
| Conread position: | 400-571 |
| Cow position: | chr5:21146234-21146067 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 403-572 |
| Cow position: | chr5:7903128-7902964 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 415-572 |
| Cow position: | chr5:70128152-70128304 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 108, 0 |
Show alignments to all cow chromosomes.