Cow genome map
| Conread name: | rpigcf0_000927.y1 |
| Conread position: | 2-291 |
| Cow position: | chr6:64314357-64314068 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 27, 37 |
| Conread position: | 3-338 |
| Cow position: | chr6:11466281-11465940 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 50 |
| Conread position: | 3-504 |
| Cow position: | chr6:27870396-27870893 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 344 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 228, 38 |
| Conread position: | 3-541 |
| Cow position: | chr6:3017074-3017601 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 47 |
| Conread position: | 3-543 |
| Cow position: | chr6:29084608-29084055 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 51 |
| Conread position: | 3-562 |
| Cow position: | chr6:6701648-6701115 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 47 |
| Conread position: | 3-566 |
| Cow position: | chr6:51191423-51192008 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 60 |
| Conread position: | 5-249 |
| Cow position: | chr6:30159480-30159728 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 50, 59 |
| Conread position: | 5-505 |
| Cow position: | chr6:34549048-34549517 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 43 |
| Conread position: | 5-526 |
| Cow position: | chr6:56376746-56376213 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 57 |
| Conread position: | 5-527 |
| Cow position: | chr6:2366502-2365976 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 355 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 48, 181 |
| Conread position: | 12-319 |
| Cow position: | chr6:16298299-16298618 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 38 |
| Conread position: | 16-402 |
| Cow position: | chr6:1891213-1890831 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 280 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 39, 48 |
| Conread position: | 20-421 |
| Cow position: | chr6:49685211-49685615 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 283 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 36, 44 |
| Conread position: | 20-450 |
| Cow position: | chr6:10253873-10254301 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 301 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 94, 18 |
| Conread position: | 34-319 |
| Cow position: | chr6:20419997-20420301 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 19, 179 |
| Conread position: | 71-332 |
| Cow position: | chr6:35613730-35613474 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 39, 68 |
| Conread position: | 71-332 |
| Cow position: | chr6:40774673-40774412 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 42, 87 |
| Conread position: | 71-459 |
| Cow position: | chr6:22968755-22969152 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 60 |
| Conread position: | 71-572 |
| Cow position: | chr6:14289671-14289185 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 221 |
| Conread position: | 74-572 |
| Cow position: | chr6:3374891-3374391 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 72 |
| Conread position: | 140-568 |
| Cow position: | chr6:12519265-12519670 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 16 |
| Conread position: | 142-540 |
| Cow position: | chr6:20171968-20172370 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 64 |
| Conread position: | 151-542 |
| Cow position: | chr6:11383207-11382818 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 23 |
| Conread position: | 163-572 |
| Cow position: | chr6:58594340-58593936 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 298 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 37, 9 |
| Conread position: | 164-572 |
| Cow position: | chr6:39916954-39917339 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 70 |
| Conread position: | 166-562 |
| Cow position: | chr6:24917936-24917551 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 65, 32 |
| Conread position: | 167-458 |
| Cow position: | chr6:44372171-44371877 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 211 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 64, 123 |
| Conread position: | 168-458 |
| Cow position: | chr6:39092288-39092564 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 208 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 63, 38 |
| Conread position: | 168-508 |
| Cow position: | chr6:6943907-6943562 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 243 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 63, 38 |
| Conread position: | 168-562 |
| Cow position: | chr6:29077502-29077904 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 367 |
| Conread position: | 172-532 |
| Cow position: | chr6:50625392-50625735 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 236 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 232, 45 |
| Conread position: | 174-534 |
| Cow position: | chr6:57119149-57118799 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 254 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 29, 97 |
| Conread position: | 174-566 |
| Cow position: | chr6:57685938-57686324 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 72 |
| Conread position: | 174-572 |
| Cow position: | chr6:45617661-45617254 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 155 |
| Conread position: | 176-504 |
| Cow position: | chr6:35415740-35415401 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 53, 30 |
| Conread position: | 176-520 |
| Cow position: | chr6:41152431-41152776 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 29 |
| Conread position: | 176-534 |
| Cow position: | chr6:38018055-38018406 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 55, 95 |
| Conread position: | 176-543 |
| Cow position: | chr6:55936195-55935824 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 120 |
| Conread position: | 176-566 |
| Cow position: | chr6:30315276-30314876 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 42 |
| Conread position: | 178-566 |
| Cow position: | chr6:38899973-38899598 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 180 |
| Conread position: | 179-572 |
| Cow position: | chr6:44377050-44377446 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 27 |
| Conread position: | 181-519 |
| Cow position: | chr6:2582661-2582988 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 48, 16 |
| Conread position: | 181-532 |
| Cow position: | chr6:6188041-6188362 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 33 |
| Conread position: | 181-546 |
| Cow position: | chr6:59277154-59276791 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 259 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 48, 169 |
| Conread position: | 181-567 |
| Cow position: | chr6:63406464-63406847 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 270 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 45, 32 |
| Conread position: | 181-572 |
| Cow position: | chr6:51071496-51071888 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 25 |
| Conread position: | 182-519 |
| Cow position: | chr6:30680791-30681114 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 226 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 72, 92 |
| Conread position: | 183-380 |
| Cow position: | chr6:4681543-4681746 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 28, 159 |
| Conread position: | 183-543 |
| Cow position: | chr6:208913-209280 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 251 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 21, 143 |
| Conread position: | 183-543 |
| Cow position: | chr6:27710443-27710800 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 144 |
| Conread position: | 183-566 |
| Cow position: | chr6:13592498-13592883 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 268 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 51, 145 |
| Conread position: | 190-526 |
| Cow position: | chr6:15782730-15782379 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 41, 107 |
| Conread position: | 190-572 |
| Cow position: | chr6:41557267-41557648 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 204 |
| Conread position: | 192-454 |
| Cow position: | chr6:6721909-6722169 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 50, 39 |
| Conread position: | 196-508 |
| Cow position: | chr6:24545418-24545732 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 216 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 35, 94 |
| Conread position: | 197-527 |
| Cow position: | chr6:32276732-32277082 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 34, 330 |
| Conread position: | 197-572 |
| Cow position: | chr6:40300058-40299669 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 266 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 20, 144 |
| Conread position: | 199-572 |
| Cow position: | chr6:11160205-11159826 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 206 |
| Conread position: | 200-566 |
| Cow position: | chr6:62326950-62327313 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 132 |
| Conread position: | 212-519 |
| Cow position: | chr6:62754664-62754353 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 19, 82 |
| Conread position: | 225-535 |
| Cow position: | chr6:47204306-47204621 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 47, 183 |
| Conread position: | 225-572 |
| Cow position: | chr6:54032084-54032407 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 241 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 24, 52 |
| Conread position: | 226-572 |
| Cow position: | chr6:4666951-4666615 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 75 |
| Conread position: | 227-507 |
| Cow position: | chr6:12964282-12964575 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 47, 37 |
| Conread position: | 233-572 |
| Cow position: | chr6:23891393-23891737 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 91 |
| Conread position: | 238-543 |
| Cow position: | chr6:50822080-50822382 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 34, 79 |
| Conread position: | 240-505 |
| Cow position: | chr6:47616765-47616494 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 32, 203 |
| Conread position: | 247-567 |
| Cow position: | chr6:31526957-31526641 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 228 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 89, 98 |
| Conread position: | 248-566 |
| Cow position: | chr6:42362444-42362760 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 58, 87 |
| Conread position: | 249-516 |
| Cow position: | chr6:35775131-35774858 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 33, 160 |
| Conread position: | 287-572 |
| Cow position: | chr6:32428125-32428413 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 206 |
| Conread position: | 292-566 |
| Cow position: | chr6:7997921-7998189 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 58, 87 |
| Conread position: | 293-529 |
| Cow position: | chr6:51486319-51486554 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 81, 60 |
| Conread position: | 305-543 |
| Cow position: | chr6:20332570-20332331 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 72, 48 |
| Conread position: | 314-527 |
| Cow position: | chr6:50501194-50501412 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 39, 8 |
| Conread position: | 325-572 |
| Cow position: | chr6:67821757-67822003 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 25, 140 |
| Conread position: | 348-572 |
| Cow position: | chr6:57474627-57474841 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 352-572 |
| Cow position: | chr6:31688223-31688005 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 173 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 25, 46 |
| Conread position: | 384-566 |
| Cow position: | chr6:60693919-60693740 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 31, 11 |
| Conread position: | 407-572 |
| Cow position: | chr6:45692642-45692479 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 145, 136 |
Show alignments to all cow chromosomes.