Cow genome map

Conread name: rpigcf0_000927.y1

Conread position: 1-441
Cow position: chr7:23681749-23681325 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 299
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 112, 48

Conread position: 3-320
Cow position: chr7:40772399-40772710 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 221
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 110, 47

Conread position: 3-374
Cow position: chr7:38070395-38070021 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 266
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 110, 57

Conread position: 3-527
Cow position: chr7:48815267-48815768 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 61

Conread position: 3-543
Cow position: chr7:40621548-40622098 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 56

Conread position: 3-561
Cow position: chr7:22879894-22880444 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 21

Conread position: 3-566
Cow position: chr7:48762984-48763512 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 52

Conread position: 3-572
Cow position: chr7:34669754-34670304 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 47

Conread position: 3-572
Cow position: chr7:52130138-52130689 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 38

Conread position: 5-157
Cow position: chr7:34213957-34214102 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 50, 61

Conread position: 5-166
Cow position: chr7:12413918-12413759 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 120
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 108, 48

Conread position: 5-189
Cow position: chr7:34245170-34245346 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 132
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 49, 0

Conread position: 5-315
Cow position: chr7:68027441-68027741 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 222
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 221, 56

Conread position: 5-329
Cow position: chr7:48695414-48695741 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 236
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 48, 59

Conread position: 5-508
Cow position: chr7:24741236-24740720 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 113

Conread position: 5-521
Cow position: chr7:43234812-43234312 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 19

Conread position: 5-521
Cow position: chr7:48548265-48547729 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 70

Conread position: 5-572
Cow position: chr7:65953773-65953222 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 382
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 113, 9

Conread position: 9-484
Cow position: chr7:48444155-48443672 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 311
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 46, 270

Conread position: 11-443
Cow position: chr7:41444970-41445418 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 308
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 39, 54

Conread position: 11-458
Cow position: chr7:39929925-39930359 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 304
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 102, 30

Conread position: 12-209
Cow position: chr7:47173195-47173003 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 144
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 43, 54

Conread position: 19-164
Cow position: chr7:9928766-9928625 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 115
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 95, 8

Conread position: 19-372
Cow position: chr7:28916729-28917072 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 244
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 94, 44

Conread position: 20-443
Cow position: chr7:50095008-50095445 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 44

Conread position: 55-368
Cow position: chr7:40263987-40263667 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 224
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 59, 85

Conread position: 71-517
Cow position: chr7:53359041-53358614 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 291
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 153, 42

Conread position: 71-527
Cow position: chr7:20355646-20356087 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 304
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 155, 42

Conread position: 71-572
Cow position: chr7:62515682-62516187 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 75

Conread position: 72-372
Cow position: chr7:63022812-63023127 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 0

Conread position: 72-543
Cow position: chr7:25223293-25223745 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 324
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 37, 67

Conread position: 74-375
Cow position: chr7:42245009-42244708 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 219
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 39, 66

Conread position: 89-332
Cow position: chr7:46928675-46928931 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 184
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 25, 0

Conread position: 135-508
Cow position: chr7:1733453-1733080 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 247
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 27, 5

Conread position: 140-516
Cow position: chr7:15610740-15611099 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 259
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 198, 94

Conread position: 156-503
Cow position: chr7:25703455-25703109 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 247
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 76, 53

Conread position: 162-523
Cow position: chr7:34162561-34162917 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 21

Conread position: 164-572
Cow position: chr7:42222659-42222255 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 77

Conread position: 166-517
Cow position: chr7:59844535-59844875 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 230
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 65, 40

Conread position: 167-543
Cow position: chr7:39512828-39512443 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 145

Conread position: 168-376
Cow position: chr7:12659223-12659005 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 153
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 39, 184

Conread position: 168-572
Cow position: chr7:63548244-63547839 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 25

Conread position: 169-519
Cow position: chr7:20147555-20147208 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 242
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 175, 58

Conread position: 169-572
Cow position: chr7:20105243-20104840 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 158

Conread position: 170-443
Cow position: chr7:3134670-3134380 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 206
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 61, 276

Conread position: 170-546
Cow position: chr7:11593412-11593049 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 143

Conread position: 171-543
Cow position: chr7:58841430-58841804 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 35

Conread position: 172-559
Cow position: chr7:52752113-52751721 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 160

Conread position: 174-519
Cow position: chr7:7507343-7507681 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 32

Conread position: 174-522
Cow position: chr7:19399895-19399543 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 239
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 57, 150

Conread position: 176-515
Cow position: chr7:52533037-52532696 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 236
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 26, 46

Conread position: 176-572
Cow position: chr7:13822537-13822962 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 251

Conread position: 177-572
Cow position: chr7:48335687-48335290 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 118

Conread position: 178-519
Cow position: chr7:53986197-53985866 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 53

Conread position: 181-534
Cow position: chr7:40192527-40192895 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 253
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 50, 28

Conread position: 181-535
Cow position: chr7:28561264-28560887 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 288

Conread position: 181-571
Cow position: chr7:26195998-26195621 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 273
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 45, 119

Conread position: 181-571
Cow position: chr7:67498493-67498875 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 273
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 50, 143

Conread position: 182-527
Cow position: chr7:23257065-23256716 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 252
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 17, 45

Conread position: 182-562
Cow position: chr7:48859729-48859340 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 11

Conread position: 182-566
Cow position: chr7:54855358-54855750 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 14

Conread position: 183-396
Cow position: chr7:41315648-41315424 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 162
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 44, 168

Conread position: 183-572
Cow position: chr7:27709877-27709484 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 23

Conread position: 184-540
Cow position: chr7:61461160-61460816 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 243
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 166, 50

Conread position: 184-571
Cow position: chr7:35754255-35754640 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 104

Conread position: 186-543
Cow position: chr7:39551140-39550799 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 261
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 51, 121

Conread position: 186-572
Cow position: chr7:61425357-61425732 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 94

Conread position: 189-508
Cow position: chr7:11872801-11872484 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 224
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 45, 17

Conread position: 191-572
Cow position: chr7:20289465-20289084 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 14

Conread position: 191-572
Cow position: chr7:37024644-37025010 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 126

Conread position: 209-572
Cow position: chr7:35171750-35171391 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 124

Conread position: 210-570
Cow position: chr7:65849245-65848890 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 243
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 17, 119

Conread position: 227-513
Cow position: chr7:56682904-56682630 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 201
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 45, 0

Conread position: 227-543
Cow position: chr7:28672180-28671866 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 78

Conread position: 227-571
Cow position: chr7:66335921-66335586 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 255
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 45, 103

Conread position: 238-526
Cow position: chr7:48205251-48204962 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 204
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 34, 103

Conread position: 255-514
Cow position: chr7:60761227-60761491 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 187
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 95, 155

Conread position: 255-572
Cow position: chr7:29378274-29377972 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 231
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 95, 67

Conread position: 269-569
Cow position: chr7:1398399-1398105 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 52

Conread position: 274-572
Cow position: chr7:63327973-63328258 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 214
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 105, 38

Conread position: 303-532
Cow position: chr7:21394316-21394089 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 162
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 71, 41

Conread position: 310-566
Cow position: chr7:3731907-3732160 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 185
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 107, 33

Conread position: 344-566
Cow position: chr7:26802520-26802301 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 154
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 6, 30

Conread position: 348-567
Cow position: chr7:20485695-20485907 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 162
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 29, 54

Conread position: 348-572
Cow position: chr7:11187176-11187399 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 175
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 33, 53

Conread position: 399-543
Cow position: chr7:44543893-44543749 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 106
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 399-543
Cow position: chr7:44548996-44548852 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 106
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 406-571
Cow position: chr7:12920853-12920685 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 122
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 15, 32

Conread position: 413-572
Cow position: chr7:1608560-1608399 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 126
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 86, 134

Conread position: 415-572
Cow position: chr7:61754619-61754768 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 128
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 42, 0

Show alignments to all cow chromosomes.