Cow genome map


           Conread name:
           rpigcf0_000927.y1
        

               Conread position:
               1-441
               

               Cow position:
               
               

               Alignm length:
               450
               

               Alignm identity:
               299
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               112, 48
               

               Conread position:
               3-320
               

               Cow position:
               
               

               Alignm length:
               328
               

               Alignm identity:
               221
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               110, 47
               

               Conread position:
               3-374
               

               Cow position:
               
               

               Alignm length:
               384
               

               Alignm identity:
               266
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               110, 57
               

               Conread position:
               3-527
               

               Cow position:
               
               

               Alignm length:
               535
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 61
               

               Conread position:
               3-543
               

               Cow position:
               
               

               Alignm length:
               562
               

               Alignm identity:
               396
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 56
               

               Conread position:
               3-561
               

               Cow position:
               
               

               Alignm length:
               568
               

               Alignm identity:
               366
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 21
               

               Conread position:
               3-566
               

               Cow position:
               
               

               Alignm length:
               568
               

               Alignm identity:
               389
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 52
               

               Conread position:
               3-572
               

               Cow position:
               
               

               Alignm length:
               584
               

               Alignm identity:
               419
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               223, 47
               

               Conread position:
               3-572
               

               Cow position:
               
               

               Alignm length:
               584
               

               Alignm identity:
               421
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 38
               

               Conread position:
               5-157
               

               Cow position:
               
               

               Alignm length:
               154
               

               Alignm identity:
               116
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               50, 61
               

               Conread position:
               5-166
               

               Cow position:
               
               

               Alignm length:
               164
               

               Alignm identity:
               120
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               108, 48
               

               Conread position:
               5-189
               

               Cow position:
               
               

               Alignm length:
               185
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               5-315
               

               Cow position:
               
               

               Alignm length:
               314
               

               Alignm identity:
               222
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               221, 56
               

               Conread position:
               5-329
               

               Cow position:
               
               

               Alignm length:
               337
               

               Alignm identity:
               236
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               48, 59
               

               Conread position:
               5-508
               

               Cow position:
               
               

               Alignm length:
               533
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 113
               

               Conread position:
               5-521
               

               Cow position:
               
               

               Alignm length:
               528
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 19
               

               Conread position:
               5-521
               

               Cow position:
               
               

               Alignm length:
               547
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 70
               

               Conread position:
               5-572
               

               Cow position:
               
               

               Alignm length:
               581
               

               Alignm identity:
               382
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               113, 9
               

               Conread position:
               9-484
               

               Cow position:
               
               

               Alignm length:
               498
               

               Alignm identity:
               311
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               46, 270
               

               Conread position:
               11-443
               

               Cow position:
               
               

               Alignm length:
               461
               

               Alignm identity:
               308
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               39, 54
               

               Conread position:
               11-458
               

               Cow position:
               
               

               Alignm length:
               458
               

               Alignm identity:
               304
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               102, 30
               

               Conread position:
               12-209
               

               Cow position:
               
               

               Alignm length:
               202
               

               Alignm identity:
               144
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               43, 54
               

               Conread position:
               19-164
               

               Cow position:
               
               

               Alignm length:
               148
               

               Alignm identity:
               115
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               95, 8
               

               Conread position:
               19-372
               

               Cow position:
               
               

               Alignm length:
               363
               

               Alignm identity:
               244
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               94, 44
               

               Conread position:
               20-443
               

               Cow position:
               
               

               Alignm length:
               446
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 44
               

               Conread position:
               55-368
               

               Cow position:
               
               

               Alignm length:
               327
               

               Alignm identity:
               224
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               59, 85
               

               Conread position:
               71-517
               

               Cow position:
               
               

               Alignm length:
               454
               

               Alignm identity:
               291
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               153, 42
               

               Conread position:
               71-527
               

               Cow position:
               
               

               Alignm length:
               466
               

               Alignm identity:
               304
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               155, 42
               

               Conread position:
               71-572
               

               Cow position:
               
               

               Alignm length:
               519
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 75
               

               Conread position:
               72-372
               

               Cow position:
               
               

               Alignm length:
               316
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               72-543
               

               Cow position:
               
               

               Alignm length:
               483
               

               Alignm identity:
               324
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               37, 67
               

               Conread position:
               74-375
               

               Cow position:
               
               

               Alignm length:
               311
               

               Alignm identity:
               219
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               39, 66
               

               Conread position:
               89-332
               

               Cow position:
               
               

               Alignm length:
               257
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               135-508
               

               Cow position:
               
               

               Alignm length:
               387
               

               Alignm identity:
               247
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               27, 5
               

               Conread position:
               140-516
               

               Cow position:
               
               

               Alignm length:
               382
               

               Alignm identity:
               259
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               198, 94
               

               Conread position:
               156-503
               

               Cow position:
               
               

               Alignm length:
               355
               

               Alignm identity:
               247
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               76, 53
               

               Conread position:
               162-523
               

               Cow position:
               
               

               Alignm length:
               370
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               162, 21
               

               Conread position:
               164-572
               

               Cow position:
               
               

               Alignm length:
               421
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 77
               

               Conread position:
               166-517
               

               Cow position:
               
               

               Alignm length:
               357
               

               Alignm identity:
               230
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               65, 40
               

               Conread position:
               167-543
               

               Cow position:
               
               

               Alignm length:
               395
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 145
               

               Conread position:
               168-376
               

               Cow position:
               
               

               Alignm length:
               220
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               39, 184
               

               Conread position:
               168-572
               

               Cow position:
               
               

               Alignm length:
               418
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 25
               

               Conread position:
               169-519
               

               Cow position:
               
               

               Alignm length:
               360
               

               Alignm identity:
               242
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               175, 58
               

               Conread position:
               169-572
               

               Cow position:
               
               

               Alignm length:
               412
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 158
               

               Conread position:
               170-443
               

               Cow position:
               
               

               Alignm length:
               292
               

               Alignm identity:
               206
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               61, 276
               

               Conread position:
               170-546
               

               Cow position:
               
               

               Alignm length:
               378
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 143
               

               Conread position:
               171-543
               

               Cow position:
               
               

               Alignm length:
               383
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 35
               

               Conread position:
               172-559
               

               Cow position:
               
               

               Alignm length:
               403
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 160
               

               Conread position:
               174-519
               

               Cow position:
               
               

               Alignm length:
               348
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               204, 32
               

               Conread position:
               174-522
               

               Cow position:
               
               

               Alignm length:
               358
               

               Alignm identity:
               239
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               57, 150
               

               Conread position:
               176-515
               

               Cow position:
               
               

               Alignm length:
               354
               

               Alignm identity:
               236
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               26, 46
               

               Conread position:
               176-572
               

               Cow position:
               
               

               Alignm length:
               432
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 251
               

               Conread position:
               177-572
               

               Cow position:
               
               

               Alignm length:
               407
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 118
               

               Conread position:
               178-519
               

               Cow position:
               
               

               Alignm length:
               345
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               199, 53
               

               Conread position:
               181-534
               

               Cow position:
               
               

               Alignm length:
               375
               

               Alignm identity:
               253
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               50, 28
               

               Conread position:
               181-535
               

               Cow position:
               
               

               Alignm length:
               379
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 288
               

               Conread position:
               181-571
               

               Cow position:
               
               

               Alignm length:
               402
               

               Alignm identity:
               273
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               45, 119
               

               Conread position:
               181-571
               

               Cow position:
               
               

               Alignm length:
               398
               

               Alignm identity:
               273
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               50, 143
               

               Conread position:
               182-527
               

               Cow position:
               
               

               Alignm length:
               358
               

               Alignm identity:
               252
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               17, 45
               

               Conread position:
               182-562
               

               Cow position:
               
               

               Alignm length:
               401
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 11
               

               Conread position:
               182-566
               

               Cow position:
               
               

               Alignm length:
               402
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 14
               

               Conread position:
               183-396
               

               Cow position:
               
               

               Alignm length:
               226
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               44, 168
               

               Conread position:
               183-572
               

               Cow position:
               
               

               Alignm length:
               407
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 23
               

               Conread position:
               184-540
               

               Cow position:
               
               

               Alignm length:
               363
               

               Alignm identity:
               243
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               166, 50
               

               Conread position:
               184-571
               

               Cow position:
               
               

               Alignm length:
               396
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 104
               

               Conread position:
               186-543
               

               Cow position:
               
               

               Alignm length:
               367
               

               Alignm identity:
               261
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               51, 121
               

               Conread position:
               186-572
               

               Cow position:
               
               

               Alignm length:
               393
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 94
               

               Conread position:
               189-508
               

               Cow position:
               
               

               Alignm length:
               331
               

               Alignm identity:
               224
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               45, 17
               

               Conread position:
               191-572
               

               Cow position:
               
               

               Alignm length:
               398
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 14
               

               Conread position:
               191-572
               

               Cow position:
               
               

               Alignm length:
               386
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 126
               

               Conread position:
               209-572
               

               Cow position:
               
               

               Alignm length:
               379
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 124
               

               Conread position:
               210-570
               

               Cow position:
               
               

               Alignm length:
               371
               

               Alignm identity:
               243
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               17, 119
               

               Conread position:
               227-513
               

               Cow position:
               
               

               Alignm length:
               287
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               227-543
               

               Cow position:
               
               

               Alignm length:
               322
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 78
               

               Conread position:
               227-571
               

               Cow position:
               
               

               Alignm length:
               354
               

               Alignm identity:
               255
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               45, 103
               

               Conread position:
               238-526
               

               Cow position:
               
               

               Alignm length:
               296
               

               Alignm identity:
               204
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               34, 103
               

               Conread position:
               255-514
               

               Cow position:
               
               

               Alignm length:
               266
               

               Alignm identity:
               187
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               95, 155
               

               Conread position:
               255-572
               

               Cow position:
               
               

               Alignm length:
               322
               

               Alignm identity:
               231
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               95, 67
               

               Conread position:
               269-569
               

               Cow position:
               
               

               Alignm length:
               306
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 52
               

               Conread position:
               274-572
               

               Cow position:
               
               

               Alignm length:
               306
               

               Alignm identity:
               214
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               105, 38
               

               Conread position:
               303-532
               

               Cow position:
               
               

               Alignm length:
               233
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               71, 41
               

               Conread position:
               310-566
               

               Cow position:
               
               

               Alignm length:
               259
               

               Alignm identity:
               185
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               107, 33
               

               Conread position:
               344-566
               

               Cow position:
               
               

               Alignm length:
               224
               

               Alignm identity:
               154
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               6, 30
               

               Conread position:
               348-567
               

               Cow position:
               
               

               Alignm length:
               226
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               29, 54
               

               Conread position:
               348-572
               

               Cow position:
               
               

               Alignm length:
               228
               

               Alignm identity:
               175
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               33, 53
               

               Conread position:
               399-543
               

               Cow position:
               
               

               Alignm length:
               145
               

               Alignm identity:
               106
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               399-543
               

               Cow position:
               
               

               Alignm length:
               145
               

               Alignm identity:
               106
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               406-571
               

               Cow position:
               
               

               Alignm length:
               170
               

               Alignm identity:
               122
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               15, 32
               

               Conread position:
               413-572
               

               Cow position:
               
               

               Alignm length:
               164
               

               Alignm identity:
               126
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               86, 134
               

               Conread position:
               415-572
               

               Cow position:
               
               

               Alignm length:
               158
               

               Alignm identity:
               128
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               42, 0
               
Show alignments to all cow chromosomes.