Cow genome map
| Conread name: | rpigcf0_000927.y1 |
| Conread position: | 3-250 |
| Cow position: | chr8:53943246-53943011 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 227, 50 |
| Conread position: | 3-370 |
| Cow position: | chr8:37180762-37180399 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 46, 63 |
| Conread position: | 3-507 |
| Cow position: | chr8:31262290-31262789 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 335 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 111, 36 |
| Conread position: | 3-533 |
| Cow position: | chr8:32719568-32720085 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 54 |
| Conread position: | 5-443 |
| Cow position: | chr8:43904371-43904803 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 301 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 106, 49 |
| Conread position: | 5-534 |
| Cow position: | chr8:8010485-8011017 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 353 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 16, 9 |
| Conread position: | 6-508 |
| Cow position: | chr8:24237363-24237841 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 58 |
| Conread position: | 9-280 |
| Cow position: | chr8:13738065-13738326 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 216, 46 |
| Conread position: | 12-272 |
| Cow position: | chr8:13559329-13559591 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 38, 52 |
| Conread position: | 12-283 |
| Cow position: | chr8:4784738-4784477 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 43, 12 |
| Conread position: | 12-372 |
| Cow position: | chr8:6329589-6329926 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 252 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 42, 52 |
| Conread position: | 12-572 |
| Cow position: | chr8:27368712-27369236 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 52 |
| Conread position: | 61-333 |
| Cow position: | chr8:46743694-46743424 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 47, 118 |
| Conread position: | 67-319 |
| Cow position: | chr8:8267652-8267907 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 64, 54 |
| Conread position: | 69-351 |
| Cow position: | chr8:16092915-16093205 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 44, 231 |
| Conread position: | 71-376 |
| Cow position: | chr8:42578429-42578121 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 229 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 61, 41 |
| Conread position: | 71-379 |
| Cow position: | chr8:44437401-44437726 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 241 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 43, 232 |
| Conread position: | 71-399 |
| Cow position: | chr8:53451168-53451490 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 155, 41 |
| Conread position: | 72-270 |
| Cow position: | chr8:15871139-15870935 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 41, 107 |
| Conread position: | 72-485 |
| Cow position: | chr8:60320165-60320588 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 258 |
| Conread position: | 73-572 |
| Cow position: | chr8:7104757-7104268 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 133 |
| Conread position: | 121-572 |
| Cow position: | chr8:9262764-9262325 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 289 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 24, 69 |
| Conread position: | 124-535 |
| Cow position: | chr8:23160654-23161064 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 27 |
| Conread position: | 146-572 |
| Cow position: | chr8:24517706-24517296 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 60 |
| Conread position: | 152-461 |
| Cow position: | chr8:16023908-16023598 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 120, 68 |
| Conread position: | 157-536 |
| Cow position: | chr8:12661014-12660638 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 36 |
| Conread position: | 168-525 |
| Cow position: | chr8:25871467-25871833 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 254 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 34, 125 |
| Conread position: | 172-508 |
| Cow position: | chr8:13809959-13810294 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 232 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 58, 109 |
| Conread position: | 172-543 |
| Cow position: | chr8:31886482-31886864 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 262 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 9, 49 |
| Conread position: | 174-534 |
| Cow position: | chr8:55304825-55305195 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 265 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 57, 171 |
| Conread position: | 176-505 |
| Cow position: | chr8:21221955-21222279 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 139, 50 |
| Conread position: | 176-535 |
| Cow position: | chr8:22103430-22103083 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 206 |
| Conread position: | 177-529 |
| Cow position: | chr8:11057905-11058258 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 29 |
| Conread position: | 177-572 |
| Cow position: | chr8:40433080-40432717 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 282 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 64, 29 |
| Conread position: | 179-458 |
| Cow position: | chr8:59438534-59438241 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 35, 179 |
| Conread position: | 180-516 |
| Cow position: | chr8:51905289-51904941 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 239 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 51, 146 |
| Conread position: | 181-502 |
| Cow position: | chr8:8134751-8134416 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 231 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 181-534 |
| Cow position: | chr8:44703847-44704204 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 251 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 46, 18 |
| Conread position: | 181-566 |
| Cow position: | chr8:61098285-61097897 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 50, 28 |
| Conread position: | 181-572 |
| Cow position: | chr8:51878172-51877789 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 145 |
| Conread position: | 181-572 |
| Cow position: | chr8:58857426-58857807 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 264 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 50, 34 |
| Conread position: | 182-508 |
| Cow position: | chr8:32079927-32079593 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 91, 36 |
| Conread position: | 182-572 |
| Cow position: | chr8:8481188-8480793 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 27 |
| Conread position: | 183-485 |
| Cow position: | chr8:26228717-26229022 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 66, 34 |
| Conread position: | 183-528 |
| Cow position: | chr8:12720531-12720862 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 24, 52 |
| Conread position: | 184-541 |
| Cow position: | chr8:931565-931911 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 166, 42 |
| Conread position: | 184-571 |
| Cow position: | chr8:42649432-42649068 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 256 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 19, 37 |
| Conread position: | 186-572 |
| Cow position: | chr8:21078298-21078678 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 162 |
| Conread position: | 187-530 |
| Cow position: | chr8:45686665-45686323 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 19 |
| Conread position: | 191-572 |
| Cow position: | chr8:2974409-2974799 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 203 |
| Conread position: | 191-572 |
| Cow position: | chr8:12791050-12790697 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 272 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 38, 77 |
| Conread position: | 193-498 |
| Cow position: | chr8:42315262-42314968 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 62 |
| Conread position: | 196-565 |
| Cow position: | chr8:5219724-5219339 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 15, 321 |
| Conread position: | 202-568 |
| Cow position: | chr8:41951398-41951743 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 262 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 29, 106 |
| Conread position: | 225-508 |
| Cow position: | chr8:11896021-11896293 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 200 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 44, 115 |
| Conread position: | 229-566 |
| Cow position: | chr8:38248888-38248560 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 43, 96 |
| Conread position: | 237-566 |
| Cow position: | chr8:25847431-25847765 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 50, 119 |
| Conread position: | 248-456 |
| Cow position: | chr8:21137438-21137230 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 126, 13 |
| Conread position: | 248-566 |
| Cow position: | chr8:55550863-55551156 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 250-564 |
| Cow position: | chr8:11792025-11792340 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 232 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 22, 95 |
| Conread position: | 252-522 |
| Cow position: | chr8:34133097-34132830 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 18, 89 |
| Conread position: | 253-521 |
| Cow position: | chr8:30022093-30021817 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 19, 205 |
| Conread position: | 271-521 |
| Cow position: | chr8:6409724-6409474 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 193 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 62, 67 |
| Conread position: | 272-568 |
| Cow position: | chr8:54158582-54158877 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 50 |
| Conread position: | 278-530 |
| Cow position: | chr8:32326524-32326775 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 72, 18 |
| Conread position: | 292-542 |
| Cow position: | chr8:37482560-37482316 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 89, 27 |
| Conread position: | 305-572 |
| Cow position: | chr8:19301072-19301343 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 200 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 16, 164 |
| Conread position: | 314-572 |
| Cow position: | chr8:48682606-48682346 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 55, 45 |
| Conread position: | 315-572 |
| Cow position: | chr8:44857349-44857615 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 35, 239 |
| Conread position: | 331-572 |
| Cow position: | chr8:19369574-19369342 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 19, 67 |
| Conread position: | 344-559 |
| Cow position: | chr8:17077748-17077964 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 10, 49 |
| Conread position: | 357-572 |
| Cow position: | chr8:33437724-33437939 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 172 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 20, 162 |
| Conread position: | 401-541 |
| Cow position: | chr8:23441154-23441013 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 411-572 |
| Cow position: | chr8:21119283-21119126 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 412-571 |
| Cow position: | chr8:59137905-59137753 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 413-572 |
| Cow position: | chr8:19876818-19876662 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 426-565 |
| Cow position: | chr8:10415784-10415921 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 431-572 |
| Cow position: | chr8:19772507-19772644 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 83, 93 |
Show alignments to all cow chromosomes.