Cow genome map


           Conread name:
           rpigcf0_000927.y1
        

               Conread position:
               3-318
               

               Cow position:
               
               

               Alignm length:
               332
               

               Alignm identity:
               234
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               106, 47
               

               Conread position:
               3-485
               

               Cow position:
               
               

               Alignm length:
               506
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 61
               

               Conread position:
               3-508
               

               Cow position:
               
               

               Alignm length:
               534
               

               Alignm identity:
               375
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 48
               

               Conread position:
               3-520
               

               Cow position:
               
               

               Alignm length:
               529
               

               Alignm identity:
               380
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 50
               

               Conread position:
               3-524
               

               Cow position:
               
               

               Alignm length:
               537
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 62
               

               Conread position:
               3-571
               

               Cow position:
               
               

               Alignm length:
               586
               

               Alignm identity:
               410
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 61
               

               Conread position:
               3-571
               

               Cow position:
               
               

               Alignm length:
               583
               

               Alignm identity:
               400
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 61
               

               Conread position:
               3-572
               

               Cow position:
               
               

               Alignm length:
               583
               

               Alignm identity:
               428
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 47
               

               Conread position:
               3-572
               

               Cow position:
               
               

               Alignm length:
               579
               

               Alignm identity:
               403
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 50
               

               Conread position:
               5-332
               

               Cow position:
               
               

               Alignm length:
               340
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 59
               

               Conread position:
               5-379
               

               Cow position:
               
               

               Alignm length:
               388
               

               Alignm identity:
               258
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               50, 20
               

               Conread position:
               5-527
               

               Cow position:
               
               

               Alignm length:
               538
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 59
               

               Conread position:
               12-377
               

               Cow position:
               
               

               Alignm length:
               394
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 38
               

               Conread position:
               12-534
               

               Cow position:
               
               

               Alignm length:
               531
               

               Alignm identity:
               334
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               43, 52
               

               Conread position:
               15-418
               

               Cow position:
               
               

               Alignm length:
               424
               

               Alignm identity:
               294
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               40, 18
               

               Conread position:
               20-204
               

               Cow position:
               
               

               Alignm length:
               196
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               36, 44
               

               Conread position:
               22-498
               

               Cow position:
               
               

               Alignm length:
               489
               

               Alignm identity:
               322
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               28, 119
               

               Conread position:
               29-261
               

               Cow position:
               
               

               Alignm length:
               240
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               27, 35
               

               Conread position:
               72-529
               

               Cow position:
               
               

               Alignm length:
               467
               

               Alignm identity:
               304
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               159, 36
               

               Conread position:
               72-564
               

               Cow position:
               
               

               Alignm length:
               505
               

               Alignm identity:
               333
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               39, 67
               

               Conread position:
               73-346
               

               Cow position:
               
               

               Alignm length:
               287
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               40, 71
               

               Conread position:
               73-571
               

               Cow position:
               
               

               Alignm length:
               505
               

               Alignm identity:
               334
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               41, 74
               

               Conread position:
               84-458
               

               Cow position:
               
               

               Alignm length:
               386
               

               Alignm identity:
               264
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               27, 20
               

               Conread position:
               89-568
               

               Cow position:
               
               

               Alignm length:
               493
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 268
               

               Conread position:
               95-511
               

               Cow position:
               
               

               Alignm length:
               447
               

               Alignm identity:
               307
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               19, 209
               

               Conread position:
               119-376
               

               Cow position:
               
               

               Alignm length:
               265
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               107, 27
               

               Conread position:
               119-530
               

               Cow position:
               
               

               Alignm length:
               440
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 92
               

               Conread position:
               137-505
               

               Cow position:
               
               

               Alignm length:
               379
               

               Alignm identity:
               250
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               40, 70
               

               Conread position:
               143-572
               

               Cow position:
               
               

               Alignm length:
               441
               

               Alignm identity:
               303
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               133, 50
               

               Conread position:
               157-484
               

               Cow position:
               
               

               Alignm length:
               336
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 187
               

               Conread position:
               161-570
               

               Cow position:
               
               

               Alignm length:
               419
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 35
               

               Conread position:
               162-526
               

               Cow position:
               
               

               Alignm length:
               378
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 12
               

               Conread position:
               163-534
               

               Cow position:
               
               

               Alignm length:
               376
               

               Alignm identity:
               230
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               68, 123
               

               Conread position:
               165-568
               

               Cow position:
               
               

               Alignm length:
               414
               

               Alignm identity:
               285
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               57, 49
               

               Conread position:
               166-571
               

               Cow position:
               
               

               Alignm length:
               410
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 40
               

               Conread position:
               166-572
               

               Cow position:
               
               

               Alignm length:
               414
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 43
               

               Conread position:
               168-376
               

               Cow position:
               
               

               Alignm length:
               217
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               59, 45
               

               Conread position:
               169-572
               

               Cow position:
               
               

               Alignm length:
               419
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 46
               

               Conread position:
               172-520
               

               Cow position:
               
               

               Alignm length:
               363
               

               Alignm identity:
               247
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               70, 34
               

               Conread position:
               172-527
               

               Cow position:
               
               

               Alignm length:
               374
               

               Alignm identity:
               253
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               59, 92
               

               Conread position:
               172-566
               

               Cow position:
               
               

               Alignm length:
               402
               

               Alignm identity:
               274
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               59, 76
               

               Conread position:
               174-568
               

               Cow position:
               
               

               Alignm length:
               401
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               178, 51
               

               Conread position:
               174-572
               

               Cow position:
               
               

               Alignm length:
               412
               

               Alignm identity:
               279
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               57, 32
               

               Conread position:
               176-412
               

               Cow position:
               
               

               Alignm length:
               243
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               59, 39
               

               Conread position:
               176-519
               

               Cow position:
               
               

               Alignm length:
               356
               

               Alignm identity:
               241
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               55, 30
               

               Conread position:
               176-527
               

               Cow position:
               
               

               Alignm length:
               361
               

               Alignm identity:
               239
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               96, 58
               

               Conread position:
               176-539
               

               Cow position:
               
               

               Alignm length:
               383
               

               Alignm identity:
               260
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               55, 161
               

               Conread position:
               176-566
               

               Cow position:
               
               

               Alignm length:
               395
               

               Alignm identity:
               261
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               51, 41
               

               Conread position:
               176-572
               

               Cow position:
               
               

               Alignm length:
               410
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 277
               

               Conread position:
               176-572
               

               Cow position:
               
               

               Alignm length:
               415
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 30
               

               Conread position:
               180-458
               

               Cow position:
               
               

               Alignm length:
               287
               

               Alignm identity:
               196
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               51, 26
               

               Conread position:
               180-458
               

               Cow position:
               
               

               Alignm length:
               285
               

               Alignm identity:
               198
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               51, 7
               

               Conread position:
               180-533
               

               Cow position:
               
               

               Alignm length:
               369
               

               Alignm identity:
               256
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               51, 132
               

               Conread position:
               181-482
               

               Cow position:
               
               

               Alignm length:
               309
               

               Alignm identity:
               201
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               51, 25
               

               Conread position:
               181-498
               

               Cow position:
               
               

               Alignm length:
               326
               

               Alignm identity:
               229
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               56, 284
               

               Conread position:
               181-526
               

               Cow position:
               
               

               Alignm length:
               356
               

               Alignm identity:
               242
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               50, 193
               

               Conread position:
               181-531
               

               Cow position:
               
               

               Alignm length:
               371
               

               Alignm identity:
               262
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               50, 217
               

               Conread position:
               181-543
               

               Cow position:
               
               

               Alignm length:
               373
               

               Alignm identity:
               243
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               50, 28
               

               Conread position:
               181-572
               

               Cow position:
               
               

               Alignm length:
               406
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 68
               

               Conread position:
               182-560
               

               Cow position:
               
               

               Alignm length:
               398
               

               Alignm identity:
               274
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               46, 31
               

               Conread position:
               183-376
               

               Cow position:
               
               

               Alignm length:
               197
               

               Alignm identity:
               138
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               66, 23
               

               Conread position:
               184-530
               

               Cow position:
               
               

               Alignm length:
               353
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 163
               

               Conread position:
               191-493
               

               Cow position:
               
               

               Alignm length:
               309
               

               Alignm identity:
               204
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               43, 18
               

               Conread position:
               197-572
               

               Cow position:
               
               

               Alignm length:
               385
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 134
               

               Conread position:
               210-541
               

               Cow position:
               
               

               Alignm length:
               338
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 54
               

               Conread position:
               246-565
               

               Cow position:
               
               

               Alignm length:
               328
               

               Alignm identity:
               217
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               7, 96
               

               Conread position:
               248-568
               

               Cow position:
               
               

               Alignm length:
               326
               

               Alignm identity:
               223
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               24, 96
               

               Conread position:
               249-534
               

               Cow position:
               
               

               Alignm length:
               296
               

               Alignm identity:
               196
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               67, 259
               

               Conread position:
               249-553
               

               Cow position:
               
               

               Alignm length:
               311
               

               Alignm identity:
               207
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               22, 75
               

               Conread position:
               261-539
               

               Cow position:
               
               

               Alignm length:
               281
               

               Alignm identity:
               193
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               114, 59
               

               Conread position:
               264-526
               

               Cow position:
               
               

               Alignm length:
               271
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               15, 57
               

               Conread position:
               300-521
               

               Cow position:
               
               

               Alignm length:
               225
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               71, 21
               

               Conread position:
               305-559
               

               Cow position:
               
               

               Alignm length:
               258
               

               Alignm identity:
               194
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               45, 23
               

               Conread position:
               310-567
               

               Cow position:
               
               

               Alignm length:
               264
               

               Alignm identity:
               182
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               36, 88
               

               Conread position:
               326-571
               

               Cow position:
               
               

               Alignm length:
               253
               

               Alignm identity:
               185
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               26, 93
               

               Conread position:
               344-572
               

               Cow position:
               
               

               Alignm length:
               232
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               50, 106
               

               Conread position:
               359-572
               

               Cow position:
               
               

               Alignm length:
               220
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               18, 67
               

               Conread position:
               402-568
               

               Cow position:
               
               

               Alignm length:
               169
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               9, 73
               

               Conread position:
               402-572
               

               Cow position:
               
               

               Alignm length:
               171
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               403-572
               

               Cow position:
               
               

               Alignm length:
               174
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               5, 128
               

               Conread position:
               405-571
               

               Cow position:
               
               

               Alignm length:
               167
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               92, 0
               

               Conread position:
               412-571
               

               Cow position:
               
               

               Alignm length:
               160
               

               Alignm identity:
               124
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               412-572
               

               Cow position:
               
               

               Alignm length:
               167
               

               Alignm identity:
               125
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               21, 74
               

               Conread position:
               430-572
               

               Cow position:
               
               

               Alignm length:
               143
               

               Alignm identity:
               116
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               112, 0
               

               Conread position:
               433-572
               

               Cow position:
               
               

               Alignm length:
               140
               

               Alignm identity:
               107
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               438-571
               

               Cow position:
               
               

               Alignm length:
               134
               

               Alignm identity:
               109
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               105, 0
               

               Conread position:
               458-572
               

               Cow position:
               
               

               Alignm length:
               116
               

               Alignm identity:
               95
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               9, 86
               
Show alignments to all cow chromosomes.