Cow genome map

Conread name: rpigcf0_000927.y1

Conread position: 3-318
Cow position: chr9:5518182-5518507 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 234
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 106, 47

Conread position: 3-485
Cow position: chr9:8778771-8779267 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 61

Conread position: 3-508
Cow position: chr9:16746150-16745623 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 48

Conread position: 3-520
Cow position: chr9:52724772-52725278 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 50

Conread position: 3-524
Cow position: chr9:14961410-14960883 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 62

Conread position: 3-571
Cow position: chr9:10760887-10761454 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 61

Conread position: 3-571
Cow position: chr9:44408492-44407929 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 61

Conread position: 3-572
Cow position: chr9:41317521-41318077 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 47

Conread position: 3-572
Cow position: chr9:55365344-55364787 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 50

Conread position: 5-332
Cow position: chr9:40059872-40060202 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 59

Conread position: 5-379
Cow position: chr9:48118250-48118616 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 258
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 50, 20

Conread position: 5-527
Cow position: chr9:44553202-44552679 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 59

Conread position: 12-377
Cow position: chr9:41782361-41781978 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 38

Conread position: 12-534
Cow position: chr9:34204556-34204056 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 334
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 43, 52

Conread position: 15-418
Cow position: chr9:8600776-8600367 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 294
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 40, 18

Conread position: 20-204
Cow position: chr9:20579178-20579366 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 148
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 36, 44

Conread position: 22-498
Cow position: chr9:41789711-41789244 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 322
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 28, 119

Conread position: 29-261
Cow position: chr9:20109932-20109708 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 170
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 27, 35

Conread position: 72-529
Cow position: chr9:41958414-41958855 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 304
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 159, 36

Conread position: 72-564
Cow position: chr9:33669092-33668622 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 333
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 39, 67

Conread position: 73-346
Cow position: chr9:37431376-37431093 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 195
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 40, 71

Conread position: 73-571
Cow position: chr9:19079620-19080095 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 334
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 41, 74

Conread position: 84-458
Cow position: chr9:8951282-8950905 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 264
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 27, 20

Conread position: 89-568
Cow position: chr9:24850623-24850145 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 268

Conread position: 95-511
Cow position: chr9:27310373-27310806 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 307
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 19, 209

Conread position: 119-376
Cow position: chr9:26278836-26279089 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 191
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 107, 27

Conread position: 119-530
Cow position: chr9:47875598-47876030 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 92

Conread position: 137-505
Cow position: chr9:25546961-25546593 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 250
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 40, 70

Conread position: 143-572
Cow position: chr9:10319772-10320183 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 303
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 133, 50

Conread position: 157-484
Cow position: chr9:38692231-38692560 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 187

Conread position: 161-570
Cow position: chr9:34762550-34762960 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 35

Conread position: 162-526
Cow position: chr9:54924927-54924553 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 12

Conread position: 163-534
Cow position: chr9:54206031-54206398 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 230
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 68, 123

Conread position: 165-568
Cow position: chr9:5486153-5485764 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 285
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 57, 49

Conread position: 166-571
Cow position: chr9:55651318-55650927 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 40

Conread position: 166-572
Cow position: chr9:12184044-12183638 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 43

Conread position: 168-376
Cow position: chr9:34957756-34957970 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 150
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 59, 45

Conread position: 169-572
Cow position: chr9:1280800-1281210 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 46

Conread position: 172-520
Cow position: chr9:2858832-2858474 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 247
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 70, 34

Conread position: 172-527
Cow position: chr9:6738959-6739326 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 253
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 59, 92

Conread position: 172-566
Cow position: chr9:11849803-11849414 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 274
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 59, 76

Conread position: 174-568
Cow position: chr9:2223493-2223880 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 51

Conread position: 174-572
Cow position: chr9:44517848-44517464 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 279
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 57, 32

Conread position: 176-412
Cow position: chr9:43814727-43814489 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 166
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 59, 39

Conread position: 176-519
Cow position: chr9:52633207-52633550 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 241
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 55, 30

Conread position: 176-527
Cow position: chr9:11201867-11201522 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 239
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 96, 58

Conread position: 176-539
Cow position: chr9:2633876-2634255 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 260
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 55, 161

Conread position: 176-566
Cow position: chr9:59530025-59530391 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 261
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 51, 41

Conread position: 176-572
Cow position: chr9:5621742-5622129 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 277

Conread position: 176-572
Cow position: chr9:11830296-11829896 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 30

Conread position: 180-458
Cow position: chr9:3724778-3725063 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 196
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 51, 26

Conread position: 180-458
Cow position: chr9:38193282-38193010 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 198
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 51, 7

Conread position: 180-533
Cow position: chr9:8099538-8099899 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 256
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 51, 132

Conread position: 181-482
Cow position: chr9:10004036-10003736 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 201
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 51, 25

Conread position: 181-498
Cow position: chr9:12356139-12355819 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 229
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 56, 284

Conread position: 181-526
Cow position: chr9:43037766-43037416 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 242
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 50, 193

Conread position: 181-531
Cow position: chr9:417413-417050 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 262
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 50, 217

Conread position: 181-543
Cow position: chr9:214182-214544 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 243
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 50, 28

Conread position: 181-572
Cow position: chr9:5141357-5140961 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 68

Conread position: 182-560
Cow position: chr9:14853172-14853554 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 274
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 46, 31

Conread position: 183-376
Cow position: chr9:13205290-13205483 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 138
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 66, 23

Conread position: 184-530
Cow position: chr9:5052958-5053305 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 163

Conread position: 191-493
Cow position: chr9:14507165-14506872 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 204
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 43, 18

Conread position: 197-572
Cow position: chr9:25502269-25502642 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 134

Conread position: 210-541
Cow position: chr9:13845989-13845657 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 54

Conread position: 246-565
Cow position: chr9:8161961-8161645 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 217
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 7, 96

Conread position: 248-568
Cow position: chr9:9634885-9635201 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 223
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 24, 96

Conread position: 249-534
Cow position: chr9:32816922-32817215 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 196
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 67, 259

Conread position: 249-553
Cow position: chr9:41904341-41904044 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 207
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 22, 75

Conread position: 261-539
Cow position: chr9:2637177-2637454 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 193
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 114, 59

Conread position: 264-526
Cow position: chr9:42037850-42037586 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 194
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 15, 57

Conread position: 300-521
Cow position: chr9:45751192-45751410 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 153
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 71, 21

Conread position: 305-559
Cow position: chr9:8406074-8406318 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 194
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 45, 23

Conread position: 310-567
Cow position: chr9:12547454-12547198 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 182
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 36, 88

Conread position: 326-571
Cow position: chr9:46657329-46657580 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 185
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 26, 93

Conread position: 344-572
Cow position: chr9:5518655-5518882 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 158
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 50, 106

Conread position: 359-572
Cow position: chr9:51269973-51269758 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 165
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 18, 67

Conread position: 402-568
Cow position: chr9:22976799-22976964 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 132
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 9, 73

Conread position: 402-572
Cow position: chr9:44944050-44944215 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 126
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 29, 0

Conread position: 403-572
Cow position: chr9:14732394-14732224 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 139
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 5, 128

Conread position: 405-571
Cow position: chr9:12182023-12181863 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 131
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 92, 0

Conread position: 412-571
Cow position: chr9:24953621-24953777 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 124
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 45, 0

Conread position: 412-572
Cow position: chr9:12198843-12199006 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 125
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 21, 74

Conread position: 430-572
Cow position: chr9:4835018-4834878 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 116
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 112, 0

Conread position: 433-572
Cow position: chr9:6109914-6109781 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 438-571
Cow position: chr9:18570364-18570495 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 109
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 105, 0

Conread position: 458-572
Cow position: chr9:8779464-8779578 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 95
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 9, 86

Show alignments to all cow chromosomes.