Cow genome map


           Conread name:
           rpigcf0_000927.y1
        

               Conread position:
               1-277
               

               Cow position:
               
               

               Alignm length:
               280
               

               Alignm identity:
               203
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               230, 49
               

               Conread position:
               1-534
               

               Cow position:
               
               

               Alignm length:
               549
               

               Alignm identity:
               370
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               110, 46
               

               Conread position:
               1-559
               

               Cow position:
               
               

               Alignm length:
               584
               

               Alignm identity:
               395
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 63
               

               Conread position:
               2-527
               

               Cow position:
               
               

               Alignm length:
               538
               

               Alignm identity:
               361
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 46
               

               Conread position:
               3-289
               

               Cow position:
               
               

               Alignm length:
               297
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 57
               

               Conread position:
               3-332
               

               Cow position:
               
               

               Alignm length:
               336
               

               Alignm identity:
               217
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               50, 61
               

               Conread position:
               3-507
               

               Cow position:
               
               

               Alignm length:
               523
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 61
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               530
               

               Alignm identity:
               348
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               94, 59
               

               Conread position:
               3-517
               

               Cow position:
               
               

               Alignm length:
               528
               

               Alignm identity:
               361
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 48
               

               Conread position:
               3-543
               

               Cow position:
               
               

               Alignm length:
               560
               

               Alignm identity:
               379
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 72
               

               Conread position:
               3-572
               

               Cow position:
               
               

               Alignm length:
               594
               

               Alignm identity:
               425
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 61
               

               Conread position:
               3-572
               

               Cow position:
               
               

               Alignm length:
               577
               

               Alignm identity:
               423
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               207, 24
               

               Conread position:
               3-572
               

               Cow position:
               
               

               Alignm length:
               583
               

               Alignm identity:
               427
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 50
               

               Conread position:
               5-319
               

               Cow position:
               
               

               Alignm length:
               328
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 59
               

               Conread position:
               5-325
               

               Cow position:
               
               

               Alignm length:
               330
               

               Alignm identity:
               224
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               180, 23
               

               Conread position:
               5-356
               

               Cow position:
               
               

               Alignm length:
               362
               

               Alignm identity:
               248
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               82, 35
               

               Conread position:
               5-456
               

               Cow position:
               
               

               Alignm length:
               465
               

               Alignm identity:
               310
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               105, 14
               

               Conread position:
               5-458
               

               Cow position:
               
               

               Alignm length:
               467
               

               Alignm identity:
               307
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               105, 44
               

               Conread position:
               5-458
               

               Cow position:
               
               

               Alignm length:
               478
               

               Alignm identity:
               329
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               7, 51
               

               Conread position:
               5-485
               

               Cow position:
               
               

               Alignm length:
               492
               

               Alignm identity:
               330
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               48, 59
               

               Conread position:
               5-516
               

               Cow position:
               
               

               Alignm length:
               527
               

               Alignm identity:
               342
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               50, 61
               

               Conread position:
               5-519
               

               Cow position:
               
               

               Alignm length:
               524
               

               Alignm identity:
               360
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 59
               

               Conread position:
               5-519
               

               Cow position:
               
               

               Alignm length:
               540
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 60
               

               Conread position:
               5-559
               

               Cow position:
               
               

               Alignm length:
               591
               

               Alignm identity:
               394
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               105, 49
               

               Conread position:
               7-168
               

               Cow position:
               
               

               Alignm length:
               168
               

               Alignm identity:
               128
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               46, 57
               

               Conread position:
               7-353
               

               Cow position:
               
               

               Alignm length:
               355
               

               Alignm identity:
               241
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               48, 61
               

               Conread position:
               7-534
               

               Cow position:
               
               

               Alignm length:
               546
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 57
               

               Conread position:
               9-527
               

               Cow position:
               
               

               Alignm length:
               545
               

               Alignm identity:
               369
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 55
               

               Conread position:
               11-507
               

               Cow position:
               
               

               Alignm length:
               514
               

               Alignm identity:
               342
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               44, 55
               

               Conread position:
               12-331
               

               Cow position:
               
               

               Alignm length:
               329
               

               Alignm identity:
               229
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               21, 15
               

               Conread position:
               12-425
               

               Cow position:
               
               

               Alignm length:
               425
               

               Alignm identity:
               281
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               214, 53
               

               Conread position:
               14-259
               

               Cow position:
               
               

               Alignm length:
               252
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               41, 50
               

               Conread position:
               14-534
               

               Cow position:
               
               

               Alignm length:
               535
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 40
               

               Conread position:
               15-572
               

               Cow position:
               
               

               Alignm length:
               579
               

               Alignm identity:
               404
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 48
               

               Conread position:
               20-301
               

               Cow position:
               
               

               Alignm length:
               307
               

               Alignm identity:
               224
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               35, 45
               

               Conread position:
               20-458
               

               Cow position:
               
               

               Alignm length:
               448
               

               Alignm identity:
               284
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               35, 44
               

               Conread position:
               21-396
               

               Cow position:
               
               

               Alignm length:
               395
               

               Alignm identity:
               261
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               89, 36
               

               Conread position:
               56-442
               

               Cow position:
               
               

               Alignm length:
               402
               

               Alignm identity:
               258
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               54, 83
               

               Conread position:
               61-259
               

               Cow position:
               
               

               Alignm length:
               205
               

               Alignm identity:
               157
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               49, 82
               

               Conread position:
               61-387
               

               Cow position:
               
               

               Alignm length:
               340
               

               Alignm identity:
               230
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               49, 236
               

               Conread position:
               71-334
               

               Cow position:
               
               

               Alignm length:
               280
               

               Alignm identity:
               203
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               45, 185
               

               Conread position:
               71-338
               

               Cow position:
               
               

               Alignm length:
               275
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               42, 71
               

               Conread position:
               71-341
               

               Cow position:
               
               

               Alignm length:
               280
               

               Alignm identity:
               197
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               69, 42
               

               Conread position:
               71-527
               

               Cow position:
               
               

               Alignm length:
               478
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 340
               

               Conread position:
               71-534
               

               Cow position:
               
               

               Alignm length:
               476
               

               Alignm identity:
               304
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               42, 137
               

               Conread position:
               135-543
               

               Cow position:
               
               

               Alignm length:
               426
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 52
               

               Conread position:
               137-524
               

               Cow position:
               
               

               Alignm length:
               402
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 81
               

               Conread position:
               158-572
               

               Cow position:
               
               

               Alignm length:
               425
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 201
               

               Conread position:
               164-469
               

               Cow position:
               
               

               Alignm length:
               320
               

               Alignm identity:
               229
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               67, 45
               

               Conread position:
               164-526
               

               Cow position:
               
               

               Alignm length:
               373
               

               Alignm identity:
               250
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               67, 53
               

               Conread position:
               165-530
               

               Cow position:
               
               

               Alignm length:
               373
               

               Alignm identity:
               248
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               66, 114
               

               Conread position:
               168-474
               

               Cow position:
               
               

               Alignm length:
               318
               

               Alignm identity:
               211
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               58, 38
               

               Conread position:
               168-527
               

               Cow position:
               
               

               Alignm length:
               376
               

               Alignm identity:
               257
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               57, 160
               

               Conread position:
               170-530
               

               Cow position:
               
               

               Alignm length:
               365
               

               Alignm identity:
               238
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               67, 38
               

               Conread position:
               170-534
               

               Cow position:
               
               

               Alignm length:
               372
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               102, 13
               

               Conread position:
               170-566
               

               Cow position:
               
               

               Alignm length:
               406
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 165
               

               Conread position:
               170-572
               

               Cow position:
               
               

               Alignm length:
               410
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 36
               

               Conread position:
               173-508
               

               Cow position:
               
               

               Alignm length:
               348
               

               Alignm identity:
               237
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               54, 96
               

               Conread position:
               174-534
               

               Cow position:
               
               

               Alignm length:
               375
               

               Alignm identity:
               253
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               57, 346
               

               Conread position:
               174-545
               

               Cow position:
               
               

               Alignm length:
               386
               

               Alignm identity:
               259
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               33, 142
               

               Conread position:
               174-572
               

               Cow position:
               
               

               Alignm length:
               405
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               176, 13
               

               Conread position:
               174-572
               

               Cow position:
               
               

               Alignm length:
               407
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 76
               

               Conread position:
               175-525
               

               Cow position:
               
               

               Alignm length:
               358
               

               Alignm identity:
               243
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               56, 16
               

               Conread position:
               176-508
               

               Cow position:
               
               

               Alignm length:
               339
               

               Alignm identity:
               220
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               58, 33
               

               Conread position:
               176-521
               

               Cow position:
               
               

               Alignm length:
               357
               

               Alignm identity:
               234
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               51, 33
               

               Conread position:
               181-501
               

               Cow position:
               
               

               Alignm length:
               324
               

               Alignm identity:
               233
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               50, 80
               

               Conread position:
               181-534
               

               Cow position:
               
               

               Alignm length:
               360
               

               Alignm identity:
               245
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               50, 36
               

               Conread position:
               181-561
               

               Cow position:
               
               

               Alignm length:
               394
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 65
               

               Conread position:
               181-566
               

               Cow position:
               
               

               Alignm length:
               401
               

               Alignm identity:
               267
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               50, 25
               

               Conread position:
               181-566
               

               Cow position:
               
               

               Alignm length:
               398
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 170
               

               Conread position:
               182-543
               

               Cow position:
               
               

               Alignm length:
               376
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 138
               

               Conread position:
               183-450
               

               Cow position:
               
               

               Alignm length:
               272
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               43, 26
               

               Conread position:
               183-543
               

               Cow position:
               
               

               Alignm length:
               369
               

               Alignm identity:
               255
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               51, 26
               

               Conread position:
               183-566
               

               Cow position:
               
               

               Alignm length:
               398
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 146
               

               Conread position:
               183-572
               

               Cow position:
               
               

               Alignm length:
               398
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 11
               

               Conread position:
               183-572
               

               Cow position:
               
               

               Alignm length:
               404
               

               Alignm identity:
               265
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               44, 55
               

               Conread position:
               184-365
               

               Cow position:
               
               

               Alignm length:
               193
               

               Alignm identity:
               145
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               23, 60
               

               Conread position:
               184-508
               

               Cow position:
               
               

               Alignm length:
               333
               

               Alignm identity:
               212
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               43, 15
               

               Conread position:
               184-527
               

               Cow position:
               
               

               Alignm length:
               351
               

               Alignm identity:
               239
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               84, 159
               

               Conread position:
               184-534
               

               Cow position:
               
               

               Alignm length:
               359
               

               Alignm identity:
               244
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               47, 202
               

               Conread position:
               184-563
               

               Cow position:
               
               

               Alignm length:
               390
               

               Alignm identity:
               270
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               5, 139
               

               Conread position:
               185-434
               

               Cow position:
               
               

               Alignm length:
               261
               

               Alignm identity:
               182
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               23, 56
               

               Conread position:
               189-559
               

               Cow position:
               
               

               Alignm length:
               382
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               191-495
               

               Cow position:
               
               

               Alignm length:
               315
               

               Alignm identity:
               213
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               33, 18
               

               Conread position:
               193-572
               

               Cow position:
               
               

               Alignm length:
               397
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 105
               

               Conread position:
               194-515
               

               Cow position:
               
               

               Alignm length:
               325
               

               Alignm identity:
               215
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               159, 67
               

               Conread position:
               196-572
               

               Cow position:
               
               

               Alignm length:
               382
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 83
               

               Conread position:
               197-513
               

               Cow position:
               
               

               Alignm length:
               322
               

               Alignm identity:
               217
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               34, 82
               

               Conread position:
               197-532
               

               Cow position:
               
               

               Alignm length:
               344
               

               Alignm identity:
               232
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               31, 128
               

               Conread position:
               206-455
               

               Cow position:
               
               

               Alignm length:
               253
               

               Alignm identity:
               175
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               31, 69
               

               Conread position:
               210-522
               

               Cow position:
               
               

               Alignm length:
               325
               

               Alignm identity:
               217
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               24, 207
               

               Conread position:
               227-572
               

               Cow position:
               
               

               Alignm length:
               350
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 45
               

               Conread position:
               229-534
               

               Cow position:
               
               

               Alignm length:
               325
               

               Alignm identity:
               222
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               43, 11
               

               Conread position:
               248-571
               

               Cow position:
               
               

               Alignm length:
               342
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 163
               

               Conread position:
               327-572
               

               Cow position:
               
               

               Alignm length:
               251
               

               Alignm identity:
               173
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               34, 138
               

               Conread position:
               348-572
               

               Cow position:
               
               

               Alignm length:
               233
               

               Alignm identity:
               169
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               43, 62
               

               Conread position:
               376-516
               

               Cow position:
               
               

               Alignm length:
               141
               

               Alignm identity:
               103
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               384-550
               

               Cow position:
               
               

               Alignm length:
               167
               

               Alignm identity:
               133
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               119, 0
               

               Conread position:
               394-517
               

               Cow position:
               
               

               Alignm length:
               125
               

               Alignm identity:
               99
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               399-570
               

               Cow position:
               
               

               Alignm length:
               174
               

               Alignm identity:
               145
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               164, 13
               

               Conread position:
               403-570
               

               Cow position:
               
               

               Alignm length:
               168
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               112, 0
               

               Conread position:
               407-566
               

               Cow position:
               
               

               Alignm length:
               160
               

               Alignm identity:
               127
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               414-572
               

               Cow position:
               
               

               Alignm length:
               160
               

               Alignm identity:
               137
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               138, 45
               

               Conread position:
               414-572
               

               Cow position:
               
               

               Alignm length:
               159
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               420-572
               

               Cow position:
               
               

               Alignm length:
               153
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               123, 0
               

               Conread position:
               476-572
               

               Cow position:
               
               

               Alignm length:
               97
               

               Alignm identity:
               82
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               67, 0
               
Show alignments to all cow chromosomes.