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Cow genome map

           
Conread name:
           
rpigcf0_001345.y1
        

               
Conread position:
               
2-141
               

               
Cow position:
               
chr28:8167178-8167322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
2-412
               

               
Cow position:
               
chr28:34230405-34230005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 159
               

               
Conread position:
               
4-138
               

               
Cow position:
               
chr28:13269890-13269762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
4-153
               

               
Cow position:
               
chr28:3423949-3423797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
4-183
               

               
Cow position:
               
chr28:6563722-6563906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
37, 156
               

               
Conread position:
               
4-335
               

               
Cow position:
               
chr28:10999512-10999825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
193, 12
               

               
Conread position:
               
4-335
               

               
Cow position:
               
chr28:24082442-24082116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 153
               

               
Conread position:
               
4-373
               

               
Cow position:
               
chr28:6091528-6091174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 33
               

               
Conread position:
               
4-454
               

               
Cow position:
               
chr28:662272-661844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 43
               

               
Conread position:
               
4-462
               

               
Cow position:
               
chr28:16085486-16085040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
281, 15
               

               
Conread position:
               
4-462
               

               
Cow position:
               
chr28:23007562-23008013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 29
               

               
Conread position:
               
5-114
               

               
Cow position:
               
chr28:7750850-7750957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
5-138
               

               
Cow position:
               
chr28:11305464-11305598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
5-139
               

               
Cow position:
               
chr28:17943898-17943764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
5-148
               

               
Cow position:
               
chr28:5711840-5711984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
45, 116
               

               
Conread position:
               
5-153
               

               
Cow position:
               
chr28:26530696-26530846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
5-158
               

               
Cow position:
               
chr28:3678530-3678378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
5-181
               

               
Cow position:
               
chr28:26826393-26826217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
40, 152
               

               
Conread position:
               
5-184
               

               
Cow position:
               
chr28:5188259-5188438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
105, 152
               

               
Conread position:
               
5-184
               

               
Cow position:
               
chr28:7557559-7557743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
35, 146
               

               
Conread position:
               
5-185
               

               
Cow position:
               
chr28:8259803-8259618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
44, 157
               

               
Conread position:
               
5-195
               

               
Cow position:
               
chr28:555667-555484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
5-198
               

               
Cow position:
               
chr28:5630270-5630075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
33, 99
               

               
Conread position:
               
5-199
               

               
Cow position:
               
chr28:4937068-4937266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
42, 156
               

               
Conread position:
               
5-199
               

               
Cow position:
               
chr28:8304413-8304223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
5-211
               

               
Cow position:
               
chr28:17948946-17949151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
200, 39
               

               
Conread position:
               
5-223
               

               
Cow position:
               
chr28:4186074-4185858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
191, 150
               

               
Conread position:
               
5-262
               

               
Cow position:
               
chr28:5138828-5139078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
5-269
               

               
Cow position:
               
chr28:7927340-7927086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 50
               

               
Conread position:
               
5-282
               

               
Cow position:
               
chr28:12933562-12933832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
151, 197
               

               
Conread position:
               
5-283
               

               
Cow position:
               
chr28:6358239-6358512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
46, 170
               

               
Conread position:
               
5-283
               

               
Cow position:
               
chr28:19564064-19564330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
5-283
               

               
Cow position:
               
chr28:31223386-31223668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
42, 62
               

               
Conread position:
               
5-296
               

               
Cow position:
               
chr28:18369842-18370122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
35, 122
               

               
Conread position:
               
5-316
               

               
Cow position:
               
chr28:3449480-3449164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
74, 161
               

               
Conread position:
               
5-318
               

               
Cow position:
               
chr28:7008810-7009112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
5-357
               

               
Cow position:
               
chr28:29988938-29989290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 68
               

               
Conread position:
               
5-374
               

               
Cow position:
               
chr28:23724298-23724642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
100, 44
               

               
Conread position:
               
5-397
               

               
Cow position:
               
chr28:5436915-5437301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 98
               

               
Conread position:
               
5-413
               

               
Cow position:
               
chr28:26103869-26103490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 58
               

               
Conread position:
               
5-455
               

               
Cow position:
               
chr28:4071132-4070701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
5-460
               

               
Cow position:
               
chr28:5684871-5684421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 72
               

               
Conread position:
               
5-460
               

               
Cow position:
               
chr28:11527088-11527537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 121
               

               
Conread position:
               
5-460
               

               
Cow position:
               
chr28:13474470-13474024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 59
               

               
Conread position:
               
5-460
               

               
Cow position:
               
chr28:16210930-16211380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 67
               

               
Conread position:
               
5-462
               

               
Cow position:
               
chr28:10606467-10606897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
289, 14
               

               
Conread position:
               
6-121
               

               
Cow position:
               
chr28:4588485-4588370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
6-123
               

               
Cow position:
               
chr28:24238314-24238427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
6-129
               

               
Cow position:
               
chr28:4866408-4866529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
6-132
               

               
Cow position:
               
chr28:29500577-29500441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
6-136
               

               
Cow position:
               
chr28:8516020-8516146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
6-136
               

               
Cow position:
               
chr28:16252238-16252368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
50, 96
               

               
Conread position:
               
6-136
               

               
Cow position:
               
chr28:26960743-26960872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
6-138
               

               
Cow position:
               
chr28:8681267-8681395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
6-138
               

               
Cow position:
               
chr28:26867984-26868116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
6-139
               

               
Cow position:
               
chr28:8936318-8936184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
40, 69
               

               
Conread position:
               
6-140
               

               
Cow position:
               
chr28:21744882-21744748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
6-142
               

               
Cow position:
               
chr28:10763058-10762926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
6-145
               

               
Cow position:
               
chr28:26574572-26574441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
6-150
               

               
Cow position:
               
chr28:10203282-10203142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
52, 74
               

               
Conread position:
               
6-153
               

               
Cow position:
               
chr28:4022846-4022693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
6-153
               

               
Cow position:
               
chr28:5674042-5673895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
67, 40
               

               
Conread position:
               
6-153
               

               
Cow position:
               
chr28:7644914-7644760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
36, 95
               

               
Conread position:
               
6-153
               

               
Cow position:
               
chr28:20046712-20046573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
6-153
               

               
Cow position:
               
chr28:22085375-22085522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
6-153
               

               
Cow position:
               
chr28:32014955-32014804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
6-159
               

               
Cow position:
               
chr28:11827858-11827704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
48, 125
               

               
Conread position:
               
6-159
               

               
Cow position:
               
chr28:20281923-20281772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
6-170
               

               
Cow position:
               
chr28:9109381-9109221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
6-175
               

               
Cow position:
               
chr28:4876608-4876443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
6-177
               

               
Cow position:
               
chr28:11411369-11411538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
6-178
               

               
Cow position:
               
chr28:27429196-27429028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
6-179
               

               
Cow position:
               
chr28:30902291-30902122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
6-183
               

               
Cow position:
               
chr28:15362748-15362571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
62, 151
               

               
Conread position:
               
6-183
               

               
Cow position:
               
chr28:19038848-19039027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
45, 153
               

               
Conread position:
               
6-184
               

               
Cow position:
               
chr28:5805835-5805662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
45, 24
               

               
Conread position:
               
6-184
               

               
Cow position:
               
chr28:8396499-8396326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
6-188
               

               
Cow position:
               
chr28:13048111-13048296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
46, 78
               

               
Conread position:
               
6-190
               

               
Cow position:
               
chr28:29850652-29850830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
6-193
               

               
Cow position:
               
chr28:5232108-5231920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
43, 68
               

               
Conread position:
               
6-193
               

               
Cow position:
               
chr28:7014624-7014435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
54, 80
               

               
Conread position:
               
6-194
               

               
Cow position:
               
chr28:11016574-11016389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
121, 45
               

               
Conread position:
               
6-194
               

               
Cow position:
               
chr28:32358274-32358089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
6-196
               

               
Cow position:
               
chr28:21008500-21008686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
6-197
               

               
Cow position:
               
chr28:11743658-11743841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
44, 11
               

               
Conread position:
               
6-198
               

               
Cow position:
               
chr28:13133805-13133609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
35, 82
               

               
Conread position:
               
6-198
               

               
Cow position:
               
chr28:17680795-17680599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
43, 155
               

               
Conread position:
               
6-198
               

               
Cow position:
               
chr28:22133078-22132888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
34, 77
               

               
Conread position:
               
6-200
               

               
Cow position:
               
chr28:10958969-10958768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
150, 191
               

               
Conread position:
               
6-200
               

               
Cow position:
               
chr28:11398624-11398822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
40, 155
               

               
Conread position:
               
6-201
               

               
Cow position:
               
chr28:5205423-5205245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
118, 16
               

               
Conread position:
               
6-205
               

               
Cow position:
               
chr28:5255041-5254843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 147
               

               
Conread position:
               
6-205
               

               
Cow position:
               
chr28:24646758-24646561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
193, 147
               

               
Conread position:
               
6-206
               

               
Cow position:
               
chr28:9705826-9705621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
9, 131
               

               
Conread position:
               
6-208
               

               
Cow position:
               
chr28:2279432-2279624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
179, 46
               

               
Conread position:
               
6-208
               

               
Cow position:
               
chr28:11059661-11059467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
191, 58
               

               
Conread position:
               
6-208
               

               
Cow position:
               
chr28:20397198-20397403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
43, 154
               

               
Conread position:
               
6-210
               

               
Cow position:
               
chr28:3726038-3726247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
6-210
               

               
Cow position:
               
chr28:11987336-11987138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
192, 32
               

               
Conread position:
               
6-210
               

               
Cow position:
               
chr28:12055574-12055376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
192, 32
               

               
Conread position:
               
6-211
               

               
Cow position:
               
chr28:6975404-6975205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
6-211
               

               
Cow position:
               
chr28:8827334-8827126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
41, 143
               

               
Conread position:
               
6-213
               

               
Cow position:
               
chr28:17739995-17739788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
48, 141
               

               
Conread position:
               
6-218
               

               
Cow position:
               
chr28:19216982-19216783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
6-222
               

               
Cow position:
               
chr28:777846-777630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 151
               

               
Conread position:
               
6-236
               

               
Cow position:
               
chr28:33322627-33322398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
47, 166
               

               
Conread position:
               
6-246
               

               
Cow position:
               
chr28:4013253-4013021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 149
               

               
Conread position:
               
6-248
               

               
Cow position:
               
chr28:133907-134139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
237, 70
               

               
Conread position:
               
6-249
               

               
Cow position:
               
chr28:20759523-20759770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
41, 110
               

               
Conread position:
               
6-252
               

               
Cow position:
               
chr28:3410819-3411064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 58
               

               
Conread position:
               
6-257
               

               
Cow position:
               
chr28:3445310-3445560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 116
               

               
Conread position:
               
6-258
               

               
Cow position:
               
chr28:11814909-11815156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
104, 169
               

               
Conread position:
               
6-264
               

               
Cow position:
               
chr28:2524115-2523857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
41, 109
               

               
Conread position:
               
6-264
               

               
Cow position:
               
chr28:11559463-11559717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
36, 18
               

               
Conread position:
               
6-265
               

               
Cow position:
               
chr28:4046014-4045768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
30, 125
               

               
Conread position:
               
6-267
               

               
Cow position:
               
chr28:7350823-7350571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 149
               

               
Conread position:
               
6-280
               

               
Cow position:
               
chr28:3011097-3011372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
36, 125
               

               
Conread position:
               
6-283
               

               
Cow position:
               
chr28:23296489-23296221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
219, 149
               

               
Conread position:
               
6-292
               

               
Cow position:
               
chr28:22813418-22813154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
6-307
               

               
Cow position:
               
chr28:12672291-12672587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
37, 167
               

               
Conread position:
               
6-310
               

               
Cow position:
               
chr28:3741039-3740751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
264, 37
               

               
Conread position:
               
6-310
               

               
Cow position:
               
chr28:11346319-11346614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
56, 139
               

               
Conread position:
               
6-319
               

               
Cow position:
               
chr28:19262414-19262727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
36, 155
               

               
Conread position:
               
6-326
               

               
Cow position:
               
chr28:10863625-10863927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 135
               

               
Conread position:
               
6-332
               

               
Cow position:
               
chr28:30746568-30746879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 13
               

               
Conread position:
               
6-335
               

               
Cow position:
               
chr28:5199997-5199672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
33, 198
               

               
Conread position:
               
6-345
               

               
Cow position:
               
chr28:30326931-30327255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 37
               

               
Conread position:
               
6-347
               

               
Cow position:
               
chr28:4643600-4643929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
28, 152
               

               
Conread position:
               
6-348
               

               
Cow position:
               
chr28:8291583-8291268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
6-358
               

               
Cow position:
               
chr28:21046419-21046747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
288, 49
               

               
Conread position:
               
6-366
               

               
Cow position:
               
chr28:13527369-13527018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
43, 157
               

               
Conread position:
               
6-373
               

               
Cow position:
               
chr28:11866498-11866855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
251, 149
               

               
Conread position:
               
6-375
               

               
Cow position:
               
chr28:4881073-4881432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
282, 149
               

               
Conread position:
               
6-375
               

               
Cow position:
               
chr28:11828789-11829130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 134
               

               
Conread position:
               
6-380
               

               
Cow position:
               
chr28:30937508-30937859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
6-397
               

               
Cow position:
               
chr28:4884083-4884476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 154
               

               
Conread position:
               
6-398
               

               
Cow position:
               
chr28:29416555-29416927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
6-406
               

               
Cow position:
               
chr28:25973712-25973311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
32, 204
               

               
Conread position:
               
6-407
               

               
Cow position:
               
chr28:10053159-10053558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 44
               

               
Conread position:
               
6-411
               

               
Cow position:
               
chr28:26719500-26719137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
214, 37
               

               
Conread position:
               
6-412
               

               
Cow position:
               
chr28:751398-751002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
42, 99
               

               
Conread position:
               
6-412
               

               
Cow position:
               
chr28:1099507-1099866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
6-412
               

               
Cow position:
               
chr28:3746367-3745977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 46
               

               
Conread position:
               
6-412
               

               
Cow position:
               
chr28:5144344-5144747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 159
               

               
Conread position:
               
6-412
               

               
Cow position:
               
chr28:11422645-11423028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 126
               

               
Conread position:
               
6-413
               

               
Cow position:
               
chr28:7267779-7268161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
6-413
               

               
Cow position:
               
chr28:9100099-9099709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 68
               

               
Conread position:
               
6-413
               

               
Cow position:
               
chr28:9636288-9636682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 149
               

               
Conread position:
               
6-413
               

               
Cow position:
               
chr28:11884358-11884748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 21
               

               
Conread position:
               
6-413
               

               
Cow position:
               
chr28:12951586-12951207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
37, 114
               

               
Conread position:
               
6-413
               

               
Cow position:
               
chr28:16369919-16370300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
6-413
               

               
Cow position:
               
chr28:16919004-16919387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
6-413
               

               
Cow position:
               
chr28:23460314-23459919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 82
               

               
Conread position:
               
6-413
               

               
Cow position:
               
chr28:27218495-27218095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 115
               

               
Conread position:
               
6-413
               

               
Cow position:
               
chr28:33884572-33884184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 97
               

               
Conread position:
               
6-413
               

               
Cow position:
               
chr28:34134028-34133638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 16
               

               
Conread position:
               
6-414
               

               
Cow position:
               
chr28:5074351-5074730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 57
               

               
Conread position:
               
6-417
               

               
Cow position:
               
chr28:4016696-4016300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
340, 45
               

               
Conread position:
               
6-420
               

               
Cow position:
               
chr28:3023746-3024144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 56
               

               
Conread position:
               
6-420
               

               
Cow position:
               
chr28:9740627-9740239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
6-421
               

               
Cow position:
               
chr28:8347904-8347502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 144
               

               
Conread position:
               
6-422
               

               
Cow position:
               
chr28:4809945-4809560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
393, 57
               

               
Conread position:
               
6-439
               

               
Cow position:
               
chr28:16204160-16204582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 155
               

               
Conread position:
               
6-458
               

               
Cow position:
               
chr28:33163306-33163739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 33
               

               
Conread position:
               
6-459
               

               
Cow position:
               
chr28:11585039-11585490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
401, 44
               

               
Conread position:
               
6-460
               

               
Cow position:
               
chr28:3143715-3144170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 37
               

               
Conread position:
               
6-460
               

               
Cow position:
               
chr28:3914875-3914427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
290, 35
               

               
Conread position:
               
6-460
               

               
Cow position:
               
chr28:5204360-5203916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 21
               

               
Conread position:
               
6-460
               

               
Cow position:
               
chr28:9285207-9285647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 115
               

               
Conread position:
               
6-460
               

               
Cow position:
               
chr28:9426182-9426625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 150
               

               
Conread position:
               
6-460
               

               
Cow position:
               
chr28:10588863-10589312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
253, 37
               

               
Conread position:
               
6-460
               

               
Cow position:
               
chr28:11426378-11426827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
404, 45
               

               
Conread position:
               
6-460
               

               
Cow position:
               
chr28:12430777-12430326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 76
               

               
Conread position:
               
6-460
               

               
Cow position:
               
chr28:14998234-14997781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 29
               

               
Conread position:
               
6-460
               

               
Cow position:
               
chr28:18791204-18790729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
153, 62
               

               
Conread position:
               
6-460
               

               
Cow position:
               
chr28:21845124-21844673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
407, 147
               

               
Conread position:
               
6-460
               

               
Cow position:
               
chr28:22500337-22500769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
407, 21
               

               
Conread position:
               
6-460
               

               
Cow position:
               
chr28:24966556-24966105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 151
               

               
Conread position:
               
6-462
               

               
Cow position:
               
chr28:5818008-5817562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 29
               

               
Conread position:
               
6-462
               

               
Cow position:
               
chr28:10615777-10616235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 151
               

               
Conread position:
               
6-462
               

               
Cow position:
               
chr28:10669757-10669289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
33, 123
               

               
Conread position:
               
6-462
               

               
Cow position:
               
chr28:17637691-17638149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
62, 202
               

               
Conread position:
               
6-462
               

               
Cow position:
               
chr28:21363913-21363473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 138
               

               
Conread position:
               
6-462
               

               
Cow position:
               
chr28:21868627-21868166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 151
               

               
Conread position:
               
6-462
               

               
Cow position:
               
chr28:22308814-22308376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
48, 82
               

               
Conread position:
               
6-462
               

               
Cow position:
               
chr28:22323429-22322980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
48, 77
               

               
Conread position:
               
6-462
               

               
Cow position:
               
chr28:24672438-24671988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
37, 82
               

               
Conread position:
               
6-462
               

               
Cow position:
               
chr28:25057129-25056686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
402, 83
               

               
Conread position:
               
6-462
               

               
Cow position:
               
chr28:26743801-26743337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 155
               

               
Conread position:
               
6-462
               

               
Cow position:
               
chr28:28765730-28766195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 155
               

               
Conread position:
               
7-121
               

               
Cow position:
               
chr28:21263323-21263209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
7-122
               

               
Cow position:
               
chr28:9070054-9069939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
89, 44
               

               
Conread position:
               
7-151
               

               
Cow position:
               
chr28:10890573-10890713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
7-175
               

               
Cow position:
               
chr28:21207208-21207368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
87, 44
               

               
Conread position:
               
7-177
               

               
Cow position:
               
chr28:17727943-17728101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
7-181
               

               
Cow position:
               
chr28:16879737-16879567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
7-182
               

               
Cow position:
               
chr28:5609749-5609927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
41, 73
               

               
Conread position:
               
7-187
               

               
Cow position:
               
chr28:3397038-3397209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
5, 12
               

               
Conread position:
               
7-198
               

               
Cow position:
               
chr28:2077670-2077467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
7-198
               

               
Cow position:
               
chr28:4006950-4006762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
80, 69
               

               
Conread position:
               
7-199
               

               
Cow position:
               
chr28:7131922-7132112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
108, 123
               

               
Conread position:
               
7-208
               

               
Cow position:
               
chr28:12991304-12991103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
147, 43
               

               
Conread position:
               
7-242
               

               
Cow position:
               
chr28:26531109-26531343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
40, 77
               

               
Conread position:
               
7-262
               

               
Cow position:
               
chr28:13245733-13245478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
42, 143
               

               
Conread position:
               
7-282
               

               
Cow position:
               
chr28:17071509-17071232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
31, 84
               

               
Conread position:
               
7-302
               

               
Cow position:
               
chr28:11079469-11079185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 20
               

               
Conread position:
               
7-313
               

               
Cow position:
               
chr28:8140654-8140350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 152
               

               
Conread position:
               
7-346
               

               
Cow position:
               
chr28:5224873-5224551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
11, 41
               

               
Conread position:
               
7-346
               

               
Cow position:
               
chr28:20409560-20409227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
47, 117
               

               
Conread position:
               
7-409
               

               
Cow position:
               
chr28:18625406-18625001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
41, 152
               

               
Conread position:
               
7-413
               

               
Cow position:
               
chr28:1838165-1837767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
44, 124
               

               
Conread position:
               
7-413
               

               
Cow position:
               
chr28:3408053-3408443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
264, 98
               

               
Conread position:
               
7-413
               

               
Cow position:
               
chr28:4913923-4914327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
44, 74
               

               
Conread position:
               
7-413
               

               
Cow position:
               
chr28:7512412-7512817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 85
               

               
Conread position:
               
7-457
               

               
Cow position:
               
chr28:10745384-10744925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 89
               

               
Conread position:
               
7-460
               

               
Cow position:
               
chr28:8787708-8787267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 107
               

               
Conread position:
               
7-460
               

               
Cow position:
               
chr28:16346367-16346799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
7-460
               

               
Cow position:
               
chr28:20124950-20124506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 30
               

               
Conread position:
               
7-460
               

               
Cow position:
               
chr28:23616574-23616119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
47, 97
               

               
Conread position:
               
7-462
               

               
Cow position:
               
chr28:5827100-5826663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
256, 36
               

               
Conread position:
               
7-462
               

               
Cow position:
               
chr28:15272101-15272546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
31, 85
               

               
Conread position:
               
7-462
               

               
Cow position:
               
chr28:34442587-34443049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
31, 84
               

               
Conread position:
               
8-115
               

               
Cow position:
               
chr28:3257158-3257046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
8-132
               

               
Cow position:
               
chr28:3759165-3759031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
8-149
               

               
Cow position:
               
chr28:2777698-2777554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
8-198
               

               
Cow position:
               
chr28:10775543-10775736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
43, 107
               

               
Conread position:
               
8-378
               

               
Cow position:
               
chr28:4834675-4835036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 11
               

               
Conread position:
               
8-391
               

               
Cow position:
               
chr28:4089891-4090248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 134
               

               
Conread position:
               
8-413
               

               
Cow position:
               
chr28:22346193-22345794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 153
               

               
Conread position:
               
9-413
               

               
Cow position:
               
chr28:3492620-3493010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 136
               

               
Conread position:
               
9-460
               

               
Cow position:
               
chr28:11686851-11687308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 110
               

               
Conread position:
               
10-155
               

               
Cow position:
               
chr28:19395031-19394893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
10-167
               

               
Cow position:
               
chr28:2151272-2151432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
41, 149
               

               
Conread position:
               
10-174
               

               
Cow position:
               
chr28:24996453-24996612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
10-176
               

               
Cow position:
               
chr28:4877262-4877432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
33, 149
               

               
Conread position:
               
10-183
               

               
Cow position:
               
chr28:5236040-5235873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
44, 72
               

               
Conread position:
               
10-283
               

               
Cow position:
               
chr28:11307348-11307610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
39, 79
               

               
Conread position:
               
10-346
               

               
Cow position:
               
chr28:3406246-3406595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
28, 72
               

               
Conread position:
               
10-346
               

               
Cow position:
               
chr28:26264996-26264638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
44, 82
               

               
Conread position:
               
10-372
               

               
Cow position:
               
chr28:26982570-26982931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 139
               

               
Conread position:
               
10-460
               

               
Cow position:
               
chr28:4307727-4308181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 141
               

               
Conread position:
               
10-461
               

               
Cow position:
               
chr28:2819938-2819474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 145
               

               
Conread position:
               
10-462
               

               
Cow position:
               
chr28:4138501-4138963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
33, 152
               

               
Conread position:
               
10-462
               

               
Cow position:
               
chr28:4282323-4282777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 135
               

               
Conread position:
               
10-462
               

               
Cow position:
               
chr28:23531032-23530579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
173, 45
               

               
Conread position:
               
10-462
               

               
Cow position:
               
chr28:30303042-30303478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
277, 57
               

               
Conread position:
               
11-132
               

               
Cow position:
               
chr28:3264203-3264084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
13, 41
               

               
Conread position:
               
11-205
               

               
Cow position:
               
chr28:3200627-3200427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
40, 139
               

               
Conread position:
               
11-413
               

               
Cow position:
               
chr28:31841182-31841565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 71
               

               
Conread position:
               
11-460
               

               
Cow position:
               
chr28:5931511-5931064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 57
               

               
Conread position:
               
12-283
               

               
Cow position:
               
chr28:4182165-4181900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 19
               

               
Conread position:
               
12-314
               

               
Cow position:
               
chr28:5193491-5193187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
92, 43
               

               
Conread position:
               
12-371
               

               
Cow position:
               
chr28:9684173-9684504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 28
               

               
Conread position:
               
12-460
               

               
Cow position:
               
chr28:22332695-22332267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 142
               

               
Conread position:
               
12-460
               

               
Cow position:
               
chr28:22371508-22371959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 31
               

               
Conread position:
               
14-122
               

               
Cow position:
               
chr28:4100599-4100708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
31, 49
               

               
Conread position:
               
14-268
               

               
Cow position:
               
chr28:10978002-10977754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
40, 65
               

               
Conread position:
               
14-292
               

               
Cow position:
               
chr28:25129046-25128772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 56
               

               
Conread position:
               
16-147
               

               
Cow position:
               
chr28:8258981-8258850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
16-412
               

               
Cow position:
               
chr28:29434272-29434649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
16-460
               

               
Cow position:
               
chr28:6971190-6971622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 9
               

               
Conread position:
               
16-460
               

               
Cow position:
               
chr28:20313435-20312991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 8
               

               
Conread position:
               
17-151
               

               
Cow position:
               
chr28:4027310-4027440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
17-321
               

               
Cow position:
               
chr28:9812431-9812143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
34, 78
               

               
Conread position:
               
17-407
               

               
Cow position:
               
chr28:23793152-23793522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 76
               

               
Conread position:
               
17-407
               

               
Cow position:
               
chr28:33036319-33036685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
17-420
               

               
Cow position:
               
chr28:16386360-16386738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
37, 67
               

               
Conread position:
               
17-432
               

               
Cow position:
               
chr28:26533705-26533297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
34, 144
               

               
Conread position:
               
18-165
               

               
Cow position:
               
chr28:10212270-10212417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
33, 137
               

               
Conread position:
               
19-132
               

               
Cow position:
               
chr28:24726283-24726396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
20-179
               

               
Cow position:
               
chr28:5441746-5441901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
22-183
               

               
Cow position:
               
chr28:4364671-4364830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
26, 109
               

               
Conread position:
               
24-266
               

               
Cow position:
               
chr28:7619003-7619238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 27
               

               
Conread position:
               
24-413
               

               
Cow position:
               
chr28:25596775-25596407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 35
               

               
Conread position:
               
25-197
               

               
Cow position:
               
chr28:4938952-4938791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
21, 79
               

               
Conread position:
               
28-459
               

               
Cow position:
               
chr28:7697837-7698263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 112
               

               
Conread position:
               
29-194
               

               
Cow position:
               
chr28:4101666-4101501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
29-196
               

               
Cow position:
               
chr28:23047762-23047599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
29-460
               

               
Cow position:
               
chr28:25249496-25249090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 20
               

               
Conread position:
               
32-265
               

               
Cow position:
               
chr28:13090385-13090610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
34-413
               

               
Cow position:
               
chr28:23410184-23410549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 94
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr28:24707035-24706874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
35-211
               

               
Cow position:
               
chr28:11816530-11816702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
35-321
               

               
Cow position:
               
chr28:27161189-27161470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
252, 72
               

               
Conread position:
               
37-135
               

               
Cow position:
               
chr28:25518629-25518727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
37-413
               

               
Cow position:
               
chr28:8021966-8022336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 83
               

               
Conread position:
               
38-141
               

               
Cow position:
               
chr28:657340-657444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
38-197
               

               
Cow position:
               
chr28:4051329-4051176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
38-199
               

               
Cow position:
               
chr28:2772845-2772689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
38-199
               

               
Cow position:
               
chr28:8149497-8149656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
38-223
               

               
Cow position:
               
chr28:7498012-7498192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
38-239
               

               
Cow position:
               
chr28:4873210-4873407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
88, 98
               

               
Conread position:
               
38-259
               

               
Cow position:
               
chr28:3160822-3161032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
38-264
               

               
Cow position:
               
chr28:8147729-8147945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
38-347
               

               
Cow position:
               
chr28:2752359-2752663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
247, 117
               

               
Conread position:
               
38-347
               

               
Cow position:
               
chr28:28631869-28631559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
27, 44
               

               
Conread position:
               
38-374
               

               
Cow position:
               
chr28:27313597-27313935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
34, 48
               

               
Conread position:
               
38-407
               

               
Cow position:
               
chr28:14649476-14649129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
38-413
               

               
Cow position:
               
chr28:2899124-2898770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
246, 105
               

               
Conread position:
               
38-413
               

               
Cow position:
               
chr28:19025870-19026228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 117
               

               
Conread position:
               
38-413
               

               
Cow position:
               
chr28:19079710-19080073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
246, 117
               

               
Conread position:
               
38-413
               

               
Cow position:
               
chr28:26220391-26220036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
38-413
               

               
Cow position:
               
chr28:29199865-29199501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 106
               

               
Conread position:
               
38-428
               

               
Cow position:
               
chr28:2131789-2132163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
38-448
               

               
Cow position:
               
chr28:2960696-2961093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
38-460
               

               
Cow position:
               
chr28:12964704-12964294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 84
               

               
Conread position:
               
38-460
               

               
Cow position:
               
chr28:25400004-25399603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
17, 58
               

               
Conread position:
               
38-462
               

               
Cow position:
               
chr28:16110072-16109668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 44
               

               
Conread position:
               
38-462
               

               
Cow position:
               
chr28:31109866-31110290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 49
               

               
Conread position:
               
39-246
               

               
Cow position:
               
chr28:4823737-4823541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
11, 30
               

               
Conread position:
               
39-264
               

               
Cow position:
               
chr28:7388638-7388851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
215, 86
               

               
Conread position:
               
39-326
               

               
Cow position:
               
chr28:4355680-4355403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
227, 44
               

               
Conread position:
               
39-337
               

               
Cow position:
               
chr28:8359031-8358748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
40, 47
               

               
Conread position:
               
39-346
               

               
Cow position:
               
chr28:7415876-7416174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
28, 39
               

               
Conread position:
               
39-426
               

               
Cow position:
               
chr28:5236470-5236849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
251, 105
               

               
Conread position:
               
39-432
               

               
Cow position:
               
chr28:22321552-22321177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
253, 10
               

               
Conread position:
               
39-448
               

               
Cow position:
               
chr28:12619707-12619291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 7
               

               
Conread position:
               
39-462
               

               
Cow position:
               
chr28:19222016-19222430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 106
               

               
Conread position:
               
39-462
               

               
Cow position:
               
chr28:21103696-21104129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 52
               

               
Conread position:
               
40-153
               

               
Cow position:
               
chr28:18533774-18533886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
40-259
               

               
Cow position:
               
chr28:11348554-11348351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
40-262
               

               
Cow position:
               
chr28:17601421-17601636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
197, 115
               

               
Conread position:
               
40-413
               

               
Cow position:
               
chr28:33052169-33051795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 28
               

               
Conread position:
               
41-195
               

               
Cow position:
               
chr28:22147886-22148034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
65, 17
               

               
Conread position:
               
41-262
               

               
Cow position:
               
chr28:12070363-12070154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
41-291
               

               
Cow position:
               
chr28:34247899-34248133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
41-338
               

               
Cow position:
               
chr28:5273298-5273599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
24, 37
               

               
Conread position:
               
41-368
               

               
Cow position:
               
chr28:18759923-18760233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
301, 64
               

               
Conread position:
               
41-383
               

               
Cow position:
               
chr28:4159087-4158756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
41-460
               

               
Cow position:
               
chr28:11752009-11752428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 14
               

               
Conread position:
               
41-460
               

               
Cow position:
               
chr28:28164217-28163813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 28
               

               
Conread position:
               
43-178
               

               
Cow position:
               
chr28:4248523-4248654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
7, 25
               

               
Conread position:
               
43-413
               

               
Cow position:
               
chr28:10172287-10172639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
44-187
               

               
Cow position:
               
chr28:32179822-32179685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
44-260
               

               
Cow position:
               
chr28:25677212-25677426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
44-292
               

               
Cow position:
               
chr28:5577659-5577414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
15, 134
               

               
Conread position:
               
44-294
               

               
Cow position:
               
chr28:32174758-32174516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
44-296
               

               
Cow position:
               
chr28:4765804-4765559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
72, 11
               

               
Conread position:
               
44-348
               

               
Cow position:
               
chr28:1632528-1632821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
219, 100
               

               
Conread position:
               
44-413
               

               
Cow position:
               
chr28:3078555-3078903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
45-338
               

               
Cow position:
               
chr28:616510-616227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
16, 42
               

               
Conread position:
               
46-235
               

               
Cow position:
               
chr28:4438838-4438655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
40, 5
               

               
Conread position:
               
47-248
               

               
Cow position:
               
chr28:3275617-3275423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
47-411
               

               
Cow position:
               
chr28:14508242-14508589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
14, 100
               

               
Conread position:
               
48-413
               

               
Cow position:
               
chr28:24343491-24343142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
179, 96
               

               
Conread position:
               
49-277
               

               
Cow position:
               
chr28:13232987-13233205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
14, 111
               

               
Conread position:
               
49-284
               

               
Cow position:
               
chr28:16245941-16246166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
49-292
               

               
Cow position:
               
chr28:5166891-5166655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
50-413
               

               
Cow position:
               
chr28:13865961-13865620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
179, 5
               

               
Conread position:
               
51-232
               

               
Cow position:
               
chr28:2762317-2762142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
51-412
               

               
Cow position:
               
chr28:4188675-4188309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 11
               

               
Conread position:
               
51-418
               

               
Cow position:
               
chr28:26922246-26922595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
51-460
               

               
Cow position:
               
chr28:7548936-7549345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
362, 103
               

               
Conread position:
               
52-177
               

               
Cow position:
               
chr28:26784121-26784243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
52-185
               

               
Cow position:
               
chr28:3147599-3147472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
52-200
               

               
Cow position:
               
chr28:4361330-4361473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
52-279
               

               
Cow position:
               
chr28:4179673-4179455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
10, 89
               

               
Conread position:
               
52-286
               

               
Cow position:
               
chr28:17601754-17601980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
212, 103
               

               
Conread position:
               
52-457
               

               
Cow position:
               
chr28:2814387-2814779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
19, 89
               

               
Conread position:
               
52-462
               

               
Cow position:
               
chr28:12892316-12892689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
53-292
               

               
Cow position:
               
chr28:7372002-7372233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
54-411
               

               
Cow position:
               
chr28:6059351-6059696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
246, 101
               

               
Conread position:
               
55-458
               

               
Cow position:
               
chr28:7865447-7865046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 100
               

               
Conread position:
               
56-333
               

               
Cow position:
               
chr28:14512650-14512370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
136, 92
               

               
Conread position:
               
56-462
               

               
Cow position:
               
chr28:21598133-21598538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 101
               

               
Conread position:
               
57-413
               

               
Cow position:
               
chr28:13176573-13176904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
60-345
               

               
Cow position:
               
chr28:32365956-32365681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
270, 8
               

               
Conread position:
               
60-459
               

               
Cow position:
               
chr28:15043749-15044138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
322, 68
               

               
Conread position:
               
61-347
               

               
Cow position:
               
chr28:3169077-3169358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 92
               

               
Conread position:
               
61-411
               

               
Cow position:
               
chr28:13608010-13607663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
19, 36
               

               
Conread position:
               
61-413
               

               
Cow position:
               
chr28:18591382-18591045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
61-413
               

               
Cow position:
               
chr28:34561455-34561133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
180, 55
               

               
Conread position:
               
61-456
               

               
Cow position:
               
chr28:26614985-26614616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 93
               

               
Conread position:
               
62-382
               

               
Cow position:
               
chr28:32735201-32734898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
222, 92
               

               
Conread position:
               
63-413
               

               
Cow position:
               
chr28:4841280-4841622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 95
               

               
Conread position:
               
63-448
               

               
Cow position:
               
chr28:5128618-5128998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 92
               

               
Conread position:
               
64-181
               

               
Cow position:
               
chr28:25675396-25675511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
64-413
               

               
Cow position:
               
chr28:2862977-2862636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
65-210
               

               
Cow position:
               
chr28:10964527-10964386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
121, 75
               

               
Conread position:
               
67-413
               

               
Cow position:
               
chr28:21502502-21502169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
9, 92
               

               
Conread position:
               
68-339
               

               
Cow position:
               
chr28:2873024-2872760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
68-460
               

               
Cow position:
               
chr28:7228285-7228667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
345, 10
               

               
Conread position:
               
68-460
               

               
Cow position:
               
chr28:11786612-11786989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
219, 76
               

               
Conread position:
               
68-462
               

               
Cow position:
               
chr28:21380984-21380596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
339, 22
               

               
Conread position:
               
70-413
               

               
Cow position:
               
chr28:23676241-23675918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
73-374
               

               
Cow position:
               
chr28:18186656-18186358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
253, 82
               

               
Conread position:
               
80-413
               

               
Cow position:
               
chr28:5792801-5792478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
186, 75
               

               
Conread position:
               
81-397
               

               
Cow position:
               
chr28:25283286-25282995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
206, 55
               

               
Conread position:
               
81-460
               

               
Cow position:
               
chr28:4536551-4536187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 76
               

               
Conread position:
               
82-453
               

               
Cow position:
               
chr28:21672883-21672523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
233, 5
               

               
Conread position:
               
83-412
               

               
Cow position:
               
chr28:8408824-8408515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 72
               

               
Conread position:
               
84-337
               

               
Cow position:
               
chr28:25806662-25806415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
203, 56
               

               
Conread position:
               
85-458
               

               
Cow position:
               
chr28:13267877-13267499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 40
               

               
Conread position:
               
87-413
               

               
Cow position:
               
chr28:10529404-10529708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
202, 79
               

               
Conread position:
               
95-207
               

               
Cow position:
               
chr28:17393855-17393745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
97-460
               

               
Cow position:
               
chr28:10533859-10534212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
299, 57
               

               
Conread position:
               
99-334
               

               
Cow position:
               
chr28:15577188-15577414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
168, 45
               

               
Conread position:
               
106-462
               

               
Cow position:
               
chr28:12758433-12758792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
181, 63
               

               
Conread position:
               
107-462
               

               
Cow position:
               
chr28:4588163-4587811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 21
               

               
Conread position:
               
111-460
               

               
Cow position:
               
chr28:7751239-7751584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
303, 26
               

               
Conread position:
               
112-406
               

               
Cow position:
               
chr28:2737745-2738030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
113-460
               

               
Cow position:
               
chr28:3256858-3256518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
292, 41
               

               
Conread position:
               
119-398
               

               
Cow position:
               
chr28:3714855-3714591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
108, 50
               

               
Conread position:
               
127-346
               

               
Cow position:
               
chr28:28903616-28903833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
11, 29
               

               
Conread position:
               
128-458
               

               
Cow position:
               
chr28:19222554-19222875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
16, 74
               

               
Conread position:
               
131-409
               

               
Cow position:
               
chr28:5904774-5904514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
131-459
               

               
Cow position:
               
chr28:8681798-8682133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
181, 10
               

               
Conread position:
               
133-412
               

               
Cow position:
               
chr28:23776090-23775821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
134-315
               

               
Cow position:
               
chr28:10762705-10762525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
23, 65
               

               
Conread position:
               
135-413
               

               
Cow position:
               
chr28:17288254-17287999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
136-334
               

               
Cow position:
               
chr28:7607938-7608133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
145-460
               

               
Cow position:
               
chr28:15063309-15063622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 59
               

               
Conread position:
               
147-374
               

               
Cow position:
               
chr28:25459562-25459339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
56, 71
               

               
Conread position:
               
149-336
               

               
Cow position:
               
chr28:7542056-7542240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
118, 53
               

               
Conread position:
               
151-335
               

               
Cow position:
               
chr28:32747945-32747773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
9, 46
               

               
Conread position:
               
157-412
               

               
Cow position:
               
chr28:8084722-8084473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
243, 38
               

               
Conread position:
               
163-346
               

               
Cow position:
               
chr28:657439-657613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
164-378
               

               
Cow position:
               
chr28:118039-118246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
123, 36
               

               
Conread position:
               
164-459
               

               
Cow position:
               
chr28:26784452-26784750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
124, 39
               

               
Conread position:
               
164-460
               

               
Cow position:
               
chr28:4880253-4880547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
249, 22
               

               
Conread position:
               
164-460
               

               
Cow position:
               
chr28:22170698-22171002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
30, 186
               

               
Conread position:
               
164-460
               

               
Cow position:
               
chr28:23480247-23480544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
121, 35
               

               
Conread position:
               
165-410
               

               
Cow position:
               
chr28:2905585-2905358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
170-420
               

               
Cow position:
               
chr28:27428752-27428520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
170-449
               

               
Cow position:
               
chr28:5805515-5805253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
242, 45
               

               
Conread position:
               
171-462
               

               
Cow position:
               
chr28:9390359-9390650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
240, 43
               

               
Conread position:
               
182-460
               

               
Cow position:
               
chr28:34082019-34082301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
105, 9
               

               
Conread position:
               
183-455
               

               
Cow position:
               
chr28:24367937-24368218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
86, 9
               

               
Conread position:
               
192-462
               

               
Cow position:
               
chr28:11759560-11759822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
221, 30
               

               
Conread position:
               
193-382
               

               
Cow position:
               
chr28:8935923-8935739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
12, 38
               

               
Conread position:
               
195-460
               

               
Cow position:
               
chr28:6486579-6486315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
218, 14
               

               
Conread position:
               
204-426
               

               
Cow position:
               
chr28:9108422-9108201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
200, 6
               

               
Conread position:
               
204-460
               

               
Cow position:
               
chr28:3000620-3000894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
10, 49
               

               
Conread position:
               
207-413
               

               
Cow position:
               
chr28:15008135-15007939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
35, 30
               

               
Conread position:
               
214-413
               

               
Cow position:
               
chr28:16243791-16243984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
5, 57
               

               
Conread position:
               
215-413
               

               
Cow position:
               
chr28:11451497-11451692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
70, 124
               

               
Conread position:
               
222-413
               

               
Cow position:
               
chr28:5658510-5658328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
222-462
               

               
Cow position:
               
chr28:17738115-17738364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
63, 129
               

               
Conread position:
               
224-459
               

               
Cow position:
               
chr28:9277105-9276862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
160, 123
               

               
Conread position:
               
224-460
               

               
Cow position:
               
chr28:28472217-28471972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
70, 124
               

               
Conread position:
               
225-412
               

               
Cow position:
               
chr28:16354649-16354845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
12, 25
               
Show alignments to all cow chromosomes.