Cow genome map
| Conread name: | rpigcf0_001412.y1 |
| Conread position: | 1-155 |
| Cow position: | chr1:93391883-93392037 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 59, 40 |
| Conread position: | 1-166 |
| Cow position: | chr1:13992454-13992620 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 55, 40 |
| Conread position: | 1-207 |
| Cow position: | chr1:13575063-13574853 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 52, 126 |
| Conread position: | 1-207 |
| Cow position: | chr1:83321639-83321426 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 1-207 |
| Cow position: | chr1:85000873-85000666 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 54, 72 |
| Conread position: | 1-209 |
| Cow position: | chr1:6968624-6968835 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 23, 28 |
| Conread position: | 1-209 |
| Cow position: | chr1:92709020-92709232 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 53, 43 |
| Conread position: | 1-210 |
| Cow position: | chr1:4279741-4279532 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 55, 40 |
| Conread position: | 1-210 |
| Cow position: | chr1:20807114-20806906 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 165 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 90, 70 |
| Conread position: | 1-210 |
| Cow position: | chr1:24509491-24509699 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 54, 43 |
| Conread position: | 1-210 |
| Cow position: | chr1:31126961-31126750 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 56, 40 |
| Conread position: | 1-210 |
| Cow position: | chr1:60860132-60860344 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 57, 9 |
| Conread position: | 1-210 |
| Cow position: | chr1:65187659-65187871 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 10, 74 |
| Conread position: | 1-210 |
| Cow position: | chr1:81454441-81454644 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 55, 40 |
| Conread position: | 1-210 |
| Cow position: | chr1:89915754-89915965 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 54, 38 |
| Conread position: | 1-210 |
| Cow position: | chr1:90845525-90845315 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 23, 28 |
| Conread position: | 1-212 |
| Cow position: | chr1:57357274-57357493 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 55, 14 |
| Conread position: | 1-452 |
| Cow position: | chr1:64753295-64753753 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 186 |
| Conread position: | 1-467 |
| Cow position: | chr1:57562848-57563321 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 16 |
| Conread position: | 1-479 |
| Cow position: | chr1:93244700-93245185 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 68 |
| Conread position: | 2-210 |
| Cow position: | chr1:61554193-61553984 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 56, 39 |
| Conread position: | 2-210 |
| Cow position: | chr1:69702969-69703183 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 3-209 |
| Cow position: | chr1:55114569-55114776 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 55, 38 |
| Conread position: | 3-225 |
| Cow position: | chr1:31979066-31978843 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 86, 38 |
| Conread position: | 4-486 |
| Cow position: | chr1:28329814-28329328 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 56 |
| Conread position: | 5-210 |
| Cow position: | chr1:81491348-81491553 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 79, 36 |
| Conread position: | 5-279 |
| Cow position: | chr1:57776423-57776712 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 49, 15 |
| Conread position: | 8-452 |
| Cow position: | chr1:13738112-13737688 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 301 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 49, 33 |
| Conread position: | 17-478 |
| Cow position: | chr1:80275840-80275379 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 24 |
| Conread position: | 53-207 |
| Cow position: | chr1:26511459-26511305 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 36, 23 |
| Conread position: | 238-486 |
| Cow position: | chr1:39638375-39638123 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 130, 158 |
| Conread position: | 238-486 |
| Cow position: | chr1:43378555-43378304 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 186 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 238-486 |
| Cow position: | chr1:94745331-94745567 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 46, 130 |
| Conread position: | 241-488 |
| Cow position: | chr1:58314050-58314293 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 187 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 213, 108 |
| Conread position: | 270-486 |
| Cow position: | chr1:57776974-57777176 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 183, 101 |
Show alignments to all cow chromosomes.