Cow genome map
| Conread name: | rpigcf0_001412.y1 |
| Conread position: | 1-193 |
| Cow position: | chr5:7393886-7393689 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 52, 127 |
| Conread position: | 1-200 |
| Cow position: | chr5:2441218-2441014 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 56, 44 |
| Conread position: | 1-202 |
| Cow position: | chr5:64796230-64796435 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 55, 40 |
| Conread position: | 1-206 |
| Cow position: | chr5:72939596-72939388 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 56, 40 |
| Conread position: | 1-206 |
| Cow position: | chr5:73480276-73480070 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 54, 34 |
| Conread position: | 1-207 |
| Cow position: | chr5:25896351-25896143 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 53, 78 |
| Conread position: | 1-207 |
| Cow position: | chr5:48275212-48275002 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 55, 46 |
| Conread position: | 1-210 |
| Cow position: | chr5:9969554-9969764 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 81, 38 |
| Conread position: | 1-210 |
| Cow position: | chr5:12219229-12219440 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 166 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 23, 28 |
| Conread position: | 1-210 |
| Cow position: | chr5:23628513-23628724 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 55, 22 |
| Conread position: | 1-210 |
| Cow position: | chr5:42183344-42183130 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 59, 40 |
| Conread position: | 1-220 |
| Cow position: | chr5:42785555-42785335 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 54, 14 |
| Conread position: | 1-224 |
| Cow position: | chr5:18585055-18585283 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 55, 28 |
| Conread position: | 1-224 |
| Cow position: | chr5:64103937-64103710 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 54, 40 |
| Conread position: | 1-233 |
| Cow position: | chr5:29537027-29536779 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 56, 43 |
| Conread position: | 1-233 |
| Cow position: | chr5:66106701-66106939 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 53, 40 |
| Conread position: | 1-234 |
| Cow position: | chr5:47619523-47619288 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 33, 41 |
| Conread position: | 1-419 |
| Cow position: | chr5:48135726-48136151 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 70 |
| Conread position: | 1-482 |
| Cow position: | chr5:47996430-47995935 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 186 |
| Conread position: | 1-483 |
| Cow position: | chr5:24888656-24889152 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 62 |
| Conread position: | 2-208 |
| Cow position: | chr5:17737123-17737334 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 57, 102 |
| Conread position: | 2-210 |
| Cow position: | chr5:21042968-21043182 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 53, 13 |
| Conread position: | 2-422 |
| Cow position: | chr5:53638131-53638552 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 292 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 27, 45 |
| Conread position: | 3-210 |
| Cow position: | chr5:42820267-42820476 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 53, 38 |
| Conread position: | 3-210 |
| Cow position: | chr5:47357868-47358067 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 172, 38 |
| Conread position: | 4-207 |
| Cow position: | chr5:31512070-31511871 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 91, 64 |
| Conread position: | 4-210 |
| Cow position: | chr5:63515821-63515617 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 4-464 |
| Cow position: | chr5:47991630-47991161 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 185 |
| Conread position: | 4-486 |
| Cow position: | chr5:18657605-18658095 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 183 |
| Conread position: | 6-482 |
| Cow position: | chr5:8764363-8764851 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 180 |
| Conread position: | 7-184 |
| Cow position: | chr5:18775541-18775366 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 81, 18 |
| Conread position: | 20-210 |
| Cow position: | chr5:5058534-5058721 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 64, 49 |
| Conread position: | 24-210 |
| Cow position: | chr5:30204632-30204819 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 32, 5 |
| Conread position: | 28-485 |
| Cow position: | chr5:45500430-45499973 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 307 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 67, 36 |
| Conread position: | 40-205 |
| Cow position: | chr5:51921280-51921109 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 91-210 |
| Cow position: | chr5:58439426-58439546 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 121-486 |
| Cow position: | chr5:21504890-21505262 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 60 |
| Conread position: | 199-486 |
| Cow position: | chr5:46783355-46783078 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 119, 173 |
| Conread position: | 205-480 |
| Cow position: | chr5:67098781-67099045 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 48, 41 |
| Conread position: | 205-486 |
| Cow position: | chr5:46273068-46272802 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 251, 134 |
| Conread position: | 295-488 |
| Cow position: | chr5:15192144-15191946 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 68, 0 |
Show alignments to all cow chromosomes.