Cow genome map
| Conread name: | rpigcf0_002377.y1 |
| Conread position: | 166-405 |
| Cow position: | chr10:21079042-21079278 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 33, 13 |
| Conread position: | 169-402 |
| Cow position: | chr10:19706203-19705975 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 32, 107 |
| Conread position: | 170-303 |
| Cow position: | chr10:14863085-14863217 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 22, 49 |
| Conread position: | 170-337 |
| Cow position: | chr10:41774177-41774014 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 170-347 |
| Cow position: | chr10:32430142-32430320 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 31, 127 |
| Conread position: | 170-347 |
| Cow position: | chr10:50135995-50136168 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 47, 96 |
| Conread position: | 170-380 |
| Cow position: | chr10:53320966-53320766 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 31, 97 |
| Conread position: | 170-401 |
| Cow position: | chr10:7280678-7280446 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 32, 56 |
| Conread position: | 170-401 |
| Cow position: | chr10:11822175-11822406 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 22, 164 |
| Conread position: | 170-401 |
| Cow position: | chr10:16927086-16927328 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 26, 175 |
| Conread position: | 170-402 |
| Cow position: | chr10:16478181-16478401 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 31, 36 |
| Conread position: | 170-402 |
| Cow position: | chr10:32317210-32317435 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 32, 43 |
| Conread position: | 170-402 |
| Cow position: | chr10:46192573-46192799 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 31, 96 |
| Conread position: | 170-403 |
| Cow position: | chr10:14853287-14853512 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 29, 42 |
| Conread position: | 170-405 |
| Cow position: | chr10:20382598-20382372 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 211, 56 |
| Conread position: | 170-405 |
| Cow position: | chr10:39877990-39877760 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 31, 11 |
| Conread position: | 171-334 |
| Cow position: | chr10:51781984-51781824 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 30, 147 |
| Conread position: | 171-346 |
| Cow position: | chr10:20375410-20375242 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 32, 54 |
| Conread position: | 171-361 |
| Cow position: | chr10:29631370-29631187 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 31, 80 |
| Conread position: | 171-380 |
| Cow position: | chr10:40398420-40398625 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 30, 41 |
| Conread position: | 171-394 |
| Cow position: | chr10:29109554-29109334 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 32, 54 |
| Conread position: | 171-405 |
| Cow position: | chr10:41387544-41387322 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 35, 80 |
| Conread position: | 171-405 |
| Cow position: | chr10:54930778-54930552 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 31, 43 |
| Conread position: | 172-345 |
| Cow position: | chr10:36469036-36468863 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 17, 116 |
| Conread position: | 172-365 |
| Cow position: | chr10:14843191-14843380 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 29, 15 |
| Conread position: | 172-380 |
| Cow position: | chr10:14334405-14334201 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 30, 146 |
| Conread position: | 172-380 |
| Cow position: | chr10:42641999-42642206 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 29, 99 |
| Conread position: | 172-380 |
| Cow position: | chr10:69510848-69510646 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 33, 54 |
| Conread position: | 172-394 |
| Cow position: | chr10:2119572-2119359 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 209, 38 |
| Conread position: | 172-400 |
| Cow position: | chr10:38343928-38343710 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 30, 96 |
| Conread position: | 172-401 |
| Cow position: | chr10:8291476-8291703 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 30, 93 |
| Conread position: | 172-401 |
| Cow position: | chr10:21488387-21488615 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 30, 122 |
| Conread position: | 172-401 |
| Cow position: | chr10:22346388-22346619 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 30, 164 |
| Conread position: | 172-401 |
| Cow position: | chr10:57988565-57988337 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 30, 93 |
| Conread position: | 172-405 |
| Cow position: | chr10:1378925-1379158 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 28, 163 |
| Conread position: | 172-405 |
| Cow position: | chr10:29011234-29011005 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 178 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 173-394 |
| Cow position: | chr10:39439582-39439804 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 29, 162 |
| Conread position: | 173-405 |
| Cow position: | chr10:38722525-38722753 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 19, 109 |
| Conread position: | 174-380 |
| Cow position: | chr10:57502238-57502436 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 28, 56 |
| Conread position: | 178-347 |
| Cow position: | chr10:21399248-21399079 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 24, 157 |
| Conread position: | 178-399 |
| Cow position: | chr10:58812327-58812107 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 24, 59 |
| Conread position: | 178-401 |
| Cow position: | chr10:10583557-10583781 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 24, 157 |
| Conread position: | 178-401 |
| Cow position: | chr10:39814963-39814739 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 21, 12 |
| Conread position: | 178-405 |
| Cow position: | chr10:19841114-19841342 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 24, 157 |
| Conread position: | 178-405 |
| Cow position: | chr10:33870720-33870948 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 24, 157 |
| Conread position: | 178-405 |
| Cow position: | chr10:44708176-44707949 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 24, 158 |
| Conread position: | 178-405 |
| Cow position: | chr10:57555900-57555672 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 24, 157 |
| Conread position: | 179-401 |
| Cow position: | chr10:37771321-37771543 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 23, 86 |
| Conread position: | 180-405 |
| Cow position: | chr10:29722616-29722392 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 25, 91 |
| Conread position: | 181-364 |
| Cow position: | chr10:36512020-36512201 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 20, 137 |
| Conread position: | 181-405 |
| Cow position: | chr10:10172173-10172398 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 29, 154 |
| Conread position: | 181-405 |
| Cow position: | chr10:24310942-24310727 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 20, 77 |
| Conread position: | 182-394 |
| Cow position: | chr10:30684053-30683839 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 20, 154 |
| Conread position: | 182-405 |
| Cow position: | chr10:68160198-68159974 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 20, 153 |
| Conread position: | 193-405 |
| Cow position: | chr10:38544440-38544229 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 20, 74 |
| Conread position: | 200-401 |
| Cow position: | chr10:21739297-21739096 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 177, 134 |
| Conread position: | 219-405 |
| Cow position: | chr10:24976322-24976145 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 160, 44 |
| Conread position: | 229-405 |
| Cow position: | chr10:55285428-55285605 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 133, 105 |
Show alignments to all cow chromosomes.