Cow genome map
| Conread name: | rpigcf0_002377.y1 |
| Conread position: | 160-401 |
| Cow position: | chr11:24394372-24394613 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 42, 126 |
| Conread position: | 168-405 |
| Cow position: | chr11:17281416-17281176 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 24, 100 |
| Conread position: | 169-394 |
| Cow position: | chr11:18069879-18069646 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 32, 43 |
| Conread position: | 169-405 |
| Cow position: | chr11:30208200-30208431 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 18, 84 |
| Conread position: | 170-345 |
| Cow position: | chr11:59628517-59628341 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 31, 166 |
| Conread position: | 170-362 |
| Cow position: | chr11:35254212-35254020 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 32, 165 |
| Conread position: | 170-372 |
| Cow position: | chr11:47759213-47759013 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 32, 154 |
| Conread position: | 170-401 |
| Cow position: | chr11:12357344-12357103 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 32, 174 |
| Conread position: | 170-405 |
| Cow position: | chr11:9156084-9155849 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 40, 134 |
| Conread position: | 170-405 |
| Cow position: | chr11:15943297-15943066 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 32, 129 |
| Conread position: | 170-405 |
| Cow position: | chr11:21475192-21475423 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 15, 73 |
| Conread position: | 170-405 |
| Cow position: | chr11:26069980-26069739 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 17, 140 |
| Conread position: | 170-405 |
| Cow position: | chr11:26073899-26073661 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 32, 134 |
| Conread position: | 170-405 |
| Cow position: | chr11:35894836-35894603 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 31, 96 |
| Conread position: | 170-405 |
| Cow position: | chr11:49039310-49039078 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 21, 83 |
| Conread position: | 170-405 |
| Cow position: | chr11:50026671-50026443 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 39, 96 |
| Conread position: | 170-405 |
| Cow position: | chr11:66730154-66730382 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 40, 20 |
| Conread position: | 171-347 |
| Cow position: | chr11:28053573-28053398 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 163, 0 |
| Conread position: | 171-390 |
| Cow position: | chr11:45921539-45921321 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 210, 40 |
| Conread position: | 171-396 |
| Cow position: | chr11:30122777-30122553 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 31, 164 |
| Conread position: | 171-399 |
| Cow position: | chr11:38834380-38834151 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 31, 163 |
| Conread position: | 171-402 |
| Cow position: | chr11:25865771-25865544 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 39, 86 |
| Conread position: | 171-405 |
| Cow position: | chr11:1489100-1488869 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 31, 110 |
| Conread position: | 171-405 |
| Cow position: | chr11:10056574-10056802 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 36, 8 |
| Conread position: | 171-405 |
| Cow position: | chr11:23249402-23249167 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 31, 164 |
| Conread position: | 172-318 |
| Cow position: | chr11:4269332-4269185 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 172-347 |
| Cow position: | chr11:54216189-54216016 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 27, 93 |
| Conread position: | 172-364 |
| Cow position: | chr11:44156194-44156001 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 15, 172 |
| Conread position: | 172-380 |
| Cow position: | chr11:72309969-72309763 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 38, 163 |
| Conread position: | 172-397 |
| Cow position: | chr11:58135463-58135690 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 38, 163 |
| Conread position: | 172-399 |
| Cow position: | chr11:26548594-26548826 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 30, 166 |
| Conread position: | 172-401 |
| Cow position: | chr11:19101424-19101195 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 38, 110 |
| Conread position: | 172-401 |
| Cow position: | chr11:23881100-23881326 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 30, 87 |
| Conread position: | 172-401 |
| Cow position: | chr11:26123861-26123628 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 176 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 30, 166 |
| Conread position: | 172-401 |
| Cow position: | chr11:29667537-29667299 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 30, 171 |
| Conread position: | 172-401 |
| Cow position: | chr11:41169627-41169397 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 30, 171 |
| Conread position: | 172-401 |
| Cow position: | chr11:44582273-44582044 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 30, 65 |
| Conread position: | 172-401 |
| Cow position: | chr11:71330664-71330898 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 30, 175 |
| Conread position: | 172-401 |
| Cow position: | chr11:85392765-85392535 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 30, 171 |
| Conread position: | 172-405 |
| Cow position: | chr11:4026539-4026309 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 30, 97 |
| Conread position: | 172-405 |
| Cow position: | chr11:10848521-10848753 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 30, 163 |
| Conread position: | 172-405 |
| Cow position: | chr11:13064916-13064681 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 177 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 29, 163 |
| Conread position: | 173-361 |
| Cow position: | chr11:44231541-44231725 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 28, 89 |
| Conread position: | 173-401 |
| Cow position: | chr11:11989203-11989430 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 29, 92 |
| Conread position: | 174-405 |
| Cow position: | chr11:87142647-87142884 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 28, 166 |
| Conread position: | 176-364 |
| Cow position: | chr11:54484204-54484024 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 178-399 |
| Cow position: | chr11:29612920-29612698 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 24, 157 |
| Conread position: | 178-405 |
| Cow position: | chr11:3494064-3494292 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 24, 157 |
| Conread position: | 178-405 |
| Cow position: | chr11:20733163-20732932 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 24, 160 |
| Conread position: | 178-405 |
| Cow position: | chr11:43513549-43513322 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 21, 136 |
| Conread position: | 178-405 |
| Cow position: | chr11:63654259-63654031 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 24, 157 |
| Conread position: | 179-394 |
| Cow position: | chr11:32685965-32686173 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 27, 103 |
| Conread position: | 179-405 |
| Cow position: | chr11:17547239-17547460 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 23, 82 |
| Conread position: | 181-347 |
| Cow position: | chr11:49558615-49558444 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 19, 159 |
| Conread position: | 181-394 |
| Cow position: | chr11:37285674-37285886 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 29, 70 |
| Conread position: | 181-399 |
| Cow position: | chr11:27668918-27668698 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 76, 155 |
| Conread position: | 182-356 |
| Cow position: | chr11:1494955-1494781 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 28, 168 |
| Conread position: | 184-405 |
| Cow position: | chr11:17106602-17106379 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 15, 152 |
| Conread position: | 191-402 |
| Cow position: | chr11:76372913-76372705 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 19, 111 |
| Conread position: | 197-401 |
| Cow position: | chr11:53430936-53430737 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 184, 92 |
| Conread position: | 210-403 |
| Cow position: | chr11:3226709-3226898 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 213-399 |
| Cow position: | chr11:73134414-73134599 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 168, 121 |
| Conread position: | 217-402 |
| Cow position: | chr11:31927270-31927450 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 164, 94 |
| Conread position: | 251-405 |
| Cow position: | chr11:15986400-15986553 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 130, 83 |
Show alignments to all cow chromosomes.