Cow genome map
| Conread name: | rpigcf0_002377.y1 |
| Conread position: | 160-401 |
| Cow position: | chr14:2295269-2295511 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 41, 145 |
| Conread position: | 169-403 |
| Cow position: | chr14:46466677-46466904 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 33, 10 |
| Conread position: | 169-405 |
| Cow position: | chr14:44552847-44553084 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 33, 166 |
| Conread position: | 170-335 |
| Cow position: | chr14:5074964-5075126 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 31, 11 |
| Conread position: | 170-344 |
| Cow position: | chr14:30705296-30705123 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 35, 30 |
| Conread position: | 170-357 |
| Cow position: | chr14:45710718-45710533 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 32, 10 |
| Conread position: | 170-380 |
| Cow position: | chr14:38148008-38148206 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 31, 60 |
| Conread position: | 170-380 |
| Cow position: | chr14:47939964-47939760 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 9, 135 |
| Conread position: | 170-399 |
| Cow position: | chr14:9521706-9521477 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 31, 115 |
| Conread position: | 170-401 |
| Cow position: | chr14:22030434-22030208 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 40, 9 |
| Conread position: | 170-404 |
| Cow position: | chr14:38814480-38814247 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 18, 69 |
| Conread position: | 170-405 |
| Cow position: | chr14:12611423-12611655 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 211, 9 |
| Conread position: | 170-405 |
| Cow position: | chr14:29046663-29046427 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 95, 165 |
| Conread position: | 171-340 |
| Cow position: | chr14:48402147-48401985 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 30, 41 |
| Conread position: | 171-347 |
| Cow position: | chr14:35384815-35384643 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 127, 87 |
| Conread position: | 171-405 |
| Cow position: | chr14:30761869-30761630 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 17, 99 |
| Conread position: | 171-405 |
| Cow position: | chr14:44227387-44227622 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 31, 66 |
| Conread position: | 172-327 |
| Cow position: | chr14:30666488-30666643 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 22, 52 |
| Conread position: | 172-376 |
| Cow position: | chr14:44690083-44690280 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 30, 87 |
| Conread position: | 172-380 |
| Cow position: | chr14:50111813-50112023 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 38, 165 |
| Conread position: | 172-399 |
| Cow position: | chr14:13779963-13780191 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 30, 163 |
| Conread position: | 172-399 |
| Cow position: | chr14:17000045-16999818 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 30, 93 |
| Conread position: | 172-401 |
| Cow position: | chr14:5513942-5514169 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 27, 119 |
| Conread position: | 172-401 |
| Cow position: | chr14:5530069-5530299 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 30, 162 |
| Conread position: | 172-401 |
| Cow position: | chr14:7473363-7473593 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 30, 171 |
| Conread position: | 172-401 |
| Cow position: | chr14:15274827-15274598 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 30, 158 |
| Conread position: | 172-401 |
| Cow position: | chr14:16272284-16272054 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 30, 162 |
| Conread position: | 172-401 |
| Cow position: | chr14:17687509-17687738 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 169 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 209, 162 |
| Conread position: | 172-401 |
| Cow position: | chr14:19327251-19327021 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 31, 163 |
| Conread position: | 172-401 |
| Cow position: | chr14:20783479-20783709 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 30, 163 |
| Conread position: | 172-405 |
| Cow position: | chr14:11153138-11152907 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 30, 79 |
| Conread position: | 172-405 |
| Cow position: | chr14:16918706-16918470 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 26, 165 |
| Conread position: | 173-380 |
| Cow position: | chr14:33402696-33402901 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 28, 33 |
| Conread position: | 176-394 |
| Cow position: | chr14:47643308-47643524 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 25, 62 |
| Conread position: | 178-355 |
| Cow position: | chr14:40342078-40342251 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 23, 121 |
| Conread position: | 178-394 |
| Cow position: | chr14:18417525-18417736 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 23, 47 |
| Conread position: | 178-397 |
| Cow position: | chr14:44290083-44290302 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 21, 92 |
| Conread position: | 178-401 |
| Cow position: | chr14:48253296-48253076 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 203, 94 |
| Conread position: | 178-402 |
| Cow position: | chr14:18105445-18105664 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 24, 88 |
| Conread position: | 178-405 |
| Cow position: | chr14:10147892-10148120 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 24, 163 |
| Conread position: | 178-405 |
| Cow position: | chr14:13303970-13304198 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 25, 157 |
| Conread position: | 178-405 |
| Cow position: | chr14:13863079-13862853 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 24, 117 |
| Conread position: | 178-405 |
| Cow position: | chr14:45027988-45027756 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 24, 81 |
| Conread position: | 179-347 |
| Cow position: | chr14:43555992-43556162 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 22, 144 |
| Conread position: | 187-401 |
| Cow position: | chr14:12742012-12741795 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 15, 150 |
| Conread position: | 193-405 |
| Cow position: | chr14:33605885-33605671 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 105, 114 |
| Conread position: | 200-401 |
| Cow position: | chr14:191086-191286 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 181, 29 |
| Conread position: | 200-405 |
| Cow position: | chr14:48601302-48601105 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 179, 36 |
| Conread position: | 202-405 |
| Cow position: | chr14:35930639-35930832 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 205-405 |
| Cow position: | chr14:9102577-9102776 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 79, 60 |
| Conread position: | 211-394 |
| Cow position: | chr14:11476236-11476059 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 170, 62 |
Show alignments to all cow chromosomes.