Cow genome map
| Conread name: | rpigcf0_002377.y1 |
| Conread position: | 160-361 |
| Cow position: | chr15:523824-523622 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 54, 178 |
| Conread position: | 166-405 |
| Cow position: | chr15:7551155-7551386 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 35, 83 |
| Conread position: | 168-405 |
| Cow position: | chr15:7964938-7964704 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 33, 10 |
| Conread position: | 168-405 |
| Cow position: | chr15:24288467-24288233 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 9, 100 |
| Conread position: | 170-376 |
| Cow position: | chr15:21964993-21965196 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 43, 75 |
| Conread position: | 170-394 |
| Cow position: | chr15:6279491-6279709 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 92, 54 |
| Conread position: | 170-394 |
| Cow position: | chr15:12454242-12454468 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 31, 10 |
| Conread position: | 170-399 |
| Cow position: | chr15:18331826-18331596 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 9, 49 |
| Conread position: | 170-401 |
| Cow position: | chr15:20411605-20411835 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 40, 165 |
| Conread position: | 170-401 |
| Cow position: | chr15:31359882-31360103 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 211, 18 |
| Conread position: | 170-405 |
| Cow position: | chr15:1851450-1851223 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 13, 81 |
| Conread position: | 170-405 |
| Cow position: | chr15:2763803-2764037 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 27, 42 |
| Conread position: | 170-405 |
| Cow position: | chr15:7929585-7929817 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 31, 136 |
| Conread position: | 170-405 |
| Cow position: | chr15:20361082-20360850 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 32, 98 |
| Conread position: | 170-405 |
| Cow position: | chr15:24718342-24718565 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 211, 30 |
| Conread position: | 171-380 |
| Cow position: | chr15:44302085-44301889 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 29, 41 |
| Conread position: | 171-405 |
| Cow position: | chr15:4108302-4108065 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 39, 166 |
| Conread position: | 171-405 |
| Cow position: | chr15:6079755-6079986 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 210, 130 |
| Conread position: | 171-405 |
| Cow position: | chr15:7892340-7892104 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 12, 8 |
| Conread position: | 171-405 |
| Cow position: | chr15:17149132-17149356 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 31, 85 |
| Conread position: | 171-405 |
| Cow position: | chr15:24794833-24795060 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 31, 68 |
| Conread position: | 171-405 |
| Cow position: | chr15:35646666-35646441 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 210, 47 |
| Conread position: | 171-405 |
| Cow position: | chr15:53339232-53339465 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 32, 78 |
| Conread position: | 172-339 |
| Cow position: | chr15:4823467-4823635 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 172-348 |
| Cow position: | chr15:6552806-6552630 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 30, 163 |
| Conread position: | 172-394 |
| Cow position: | chr15:4386765-4386989 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 31, 164 |
| Conread position: | 172-394 |
| Cow position: | chr15:24296100-24296323 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 31, 163 |
| Conread position: | 172-401 |
| Cow position: | chr15:2901252-2901021 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 172-401 |
| Cow position: | chr15:4766201-4766430 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 38, 87 |
| Conread position: | 172-401 |
| Cow position: | chr15:7838278-7838508 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 30, 163 |
| Conread position: | 172-401 |
| Cow position: | chr15:19737046-19736818 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 30, 163 |
| Conread position: | 172-401 |
| Cow position: | chr15:21664729-21664502 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 30, 87 |
| Conread position: | 172-401 |
| Cow position: | chr15:44071610-44071837 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 38, 93 |
| Conread position: | 172-405 |
| Cow position: | chr15:1299538-1299304 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 30, 162 |
| Conread position: | 172-405 |
| Cow position: | chr15:4927374-4927613 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 15, 163 |
| Conread position: | 172-405 |
| Cow position: | chr15:17294059-17294298 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 83, 28 |
| Conread position: | 172-405 |
| Cow position: | chr15:25654057-25653823 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 30, 163 |
| Conread position: | 173-405 |
| Cow position: | chr15:11293422-11293193 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 28, 38 |
| Conread position: | 173-405 |
| Cow position: | chr15:26156846-26157076 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 9, 99 |
| Conread position: | 174-405 |
| Cow position: | chr15:20355584-20355350 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 12, 68 |
| Conread position: | 175-405 |
| Cow position: | chr15:41956832-41957061 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 17, 64 |
| Conread position: | 178-391 |
| Cow position: | chr15:12419922-12419711 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 24, 81 |
| Conread position: | 178-402 |
| Cow position: | chr15:18266760-18266536 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 24, 157 |
| Conread position: | 178-405 |
| Cow position: | chr15:107016-107244 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 24, 163 |
| Conread position: | 178-405 |
| Cow position: | chr15:2013574-2013802 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 24, 157 |
| Conread position: | 178-405 |
| Cow position: | chr15:2646634-2646410 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 32, 157 |
| Conread position: | 178-405 |
| Cow position: | chr15:4141719-4141494 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 24, 157 |
| Conread position: | 178-405 |
| Cow position: | chr15:4197482-4197710 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 24, 157 |
| Conread position: | 178-405 |
| Cow position: | chr15:5010616-5010388 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 24, 157 |
| Conread position: | 178-405 |
| Cow position: | chr15:6561602-6561830 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 24, 157 |
| Conread position: | 178-405 |
| Cow position: | chr15:17077547-17077320 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 24, 136 |
| Conread position: | 178-405 |
| Cow position: | chr15:41659183-41659411 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 24, 163 |
| Conread position: | 179-380 |
| Cow position: | chr15:4672449-4672651 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 7, 165 |
| Conread position: | 179-405 |
| Cow position: | chr15:3008822-3008601 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 24, 46 |
| Conread position: | 179-405 |
| Cow position: | chr15:35898760-35898533 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 23, 162 |
| Conread position: | 179-405 |
| Cow position: | chr15:50148097-50148331 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 181-377 |
| Cow position: | chr15:500192-500388 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 20, 44 |
| Conread position: | 181-394 |
| Cow position: | chr15:29343208-29342994 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 21, 56 |
| Conread position: | 182-401 |
| Cow position: | chr15:4923165-4923383 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 34, 153 |
| Conread position: | 182-401 |
| Cow position: | chr15:6154907-6154687 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 20, 153 |
| Conread position: | 184-405 |
| Cow position: | chr15:41788066-41787849 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 26, 9 |
| Conread position: | 186-405 |
| Cow position: | chr15:9912208-9911989 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 16, 149 |
| Conread position: | 200-405 |
| Cow position: | chr15:6485618-6485822 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 175, 58 |
| Conread position: | 203-392 |
| Cow position: | chr15:6479432-6479616 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 203-405 |
| Cow position: | chr15:3182018-3181824 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 183, 112 |
| Conread position: | 205-394 |
| Cow position: | chr15:32492840-32492652 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 176, 129 |
| Conread position: | 206-377 |
| Cow position: | chr15:16286903-16286732 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 59, 129 |
| Conread position: | 211-380 |
| Cow position: | chr15:1830534-1830370 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 91, 39 |
| Conread position: | 211-401 |
| Cow position: | chr15:4726251-4726441 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 170, 131 |
| Conread position: | 224-402 |
| Cow position: | chr15:9003159-9002982 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 157, 51 |
Show alignments to all cow chromosomes.