Cow genome map
| Conread name: | rpigcf0_002377.y1 |
| Conread position: | 159-405 |
| Cow position: | chr16:5485383-5485624 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 43, 164 |
| Conread position: | 160-401 |
| Cow position: | chr16:28470415-28470173 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 42, 175 |
| Conread position: | 169-405 |
| Cow position: | chr16:41572061-41572289 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 32, 95 |
| Conread position: | 170-345 |
| Cow position: | chr16:25171994-25172169 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 31, 9 |
| Conread position: | 170-373 |
| Cow position: | chr16:4478306-4478099 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 32, 177 |
| Conread position: | 170-377 |
| Cow position: | chr16:32937187-32937394 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 44, 165 |
| Conread position: | 170-380 |
| Cow position: | chr16:5871552-5871762 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 32, 10 |
| Conread position: | 170-391 |
| Cow position: | chr16:18678020-18678237 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 32, 112 |
| Conread position: | 170-397 |
| Cow position: | chr16:18618451-18618235 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 32, 100 |
| Conread position: | 170-401 |
| Cow position: | chr16:25001628-25001393 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 32, 10 |
| Conread position: | 170-405 |
| Cow position: | chr16:3330605-3330830 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 170-405 |
| Cow position: | chr16:10565112-10564882 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 64, 30 |
| Conread position: | 170-405 |
| Cow position: | chr16:12668120-12667879 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 31, 135 |
| Conread position: | 170-405 |
| Cow position: | chr16:18497651-18497415 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 32, 11 |
| Conread position: | 170-405 |
| Cow position: | chr16:23671370-23671600 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 11, 92 |
| Conread position: | 170-405 |
| Cow position: | chr16:28436804-28436561 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 31, 188 |
| Conread position: | 170-405 |
| Cow position: | chr16:39824590-39824823 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 177 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 32, 152 |
| Conread position: | 170-405 |
| Cow position: | chr16:49255562-49255332 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 32, 55 |
| Conread position: | 171-375 |
| Cow position: | chr16:17056308-17056105 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 31, 156 |
| Conread position: | 171-401 |
| Cow position: | chr16:1432855-1433084 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 39, 141 |
| Conread position: | 171-401 |
| Cow position: | chr16:1860900-1861132 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 31, 165 |
| Conread position: | 171-402 |
| Cow position: | chr16:25086284-25086510 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 27, 41 |
| Conread position: | 171-405 |
| Cow position: | chr16:16228986-16229214 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 28, 131 |
| Conread position: | 171-405 |
| Cow position: | chr16:41762499-41762724 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 40 |
| Conread position: | 171-405 |
| Cow position: | chr16:51084821-51085058 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 39, 74 |
| Conread position: | 172-366 |
| Cow position: | chr16:7464986-7465178 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 31, 92 |
| Conread position: | 172-375 |
| Cow position: | chr16:26664423-26664622 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 30, 93 |
| Conread position: | 172-394 |
| Cow position: | chr16:1566786-1566564 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 30, 94 |
| Conread position: | 172-394 |
| Cow position: | chr16:8815434-8815215 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 30, 53 |
| Conread position: | 172-394 |
| Cow position: | chr16:15567927-15568147 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 38, 53 |
| Conread position: | 172-397 |
| Cow position: | chr16:25342639-25342865 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 203, 161 |
| Conread position: | 172-401 |
| Cow position: | chr16:406370-406140 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 173 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 30, 163 |
| Conread position: | 172-401 |
| Cow position: | chr16:837985-838214 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 30, 158 |
| Conread position: | 172-401 |
| Cow position: | chr16:2410267-2410037 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 35, 168 |
| Conread position: | 172-401 |
| Cow position: | chr16:2726545-2726318 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 209, 162 |
| Conread position: | 172-401 |
| Cow position: | chr16:4301531-4301304 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 209, 21 |
| Conread position: | 172-401 |
| Cow position: | chr16:7675782-7675560 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 44, 107 |
| Conread position: | 172-401 |
| Cow position: | chr16:10438926-10439155 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 30, 40 |
| Conread position: | 172-401 |
| Cow position: | chr16:12537280-12537051 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 30, 40 |
| Conread position: | 172-401 |
| Cow position: | chr16:14665142-14664917 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 38, 53 |
| Conread position: | 172-401 |
| Cow position: | chr16:15185745-15185976 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 30, 164 |
| Conread position: | 172-401 |
| Cow position: | chr16:23983967-23984197 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 27, 163 |
| Conread position: | 172-401 |
| Cow position: | chr16:27732715-27732485 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 30, 163 |
| Conread position: | 172-401 |
| Cow position: | chr16:37480189-37479959 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 31, 159 |
| Conread position: | 172-401 |
| Cow position: | chr16:40295493-40295266 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 30, 77 |
| Conread position: | 172-401 |
| Cow position: | chr16:43896593-43896365 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 30, 92 |
| Conread position: | 178-399 |
| Cow position: | chr16:3088528-3088309 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 21, 48 |
| Conread position: | 178-399 |
| Cow position: | chr16:25456804-25456586 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 24, 47 |
| Conread position: | 178-399 |
| Cow position: | chr16:29047698-29047917 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 24, 73 |
| Conread position: | 178-401 |
| Cow position: | chr16:25442304-25442526 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 24, 86 |
| Conread position: | 181-364 |
| Cow position: | chr16:23251748-23251565 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 21, 154 |
| Conread position: | 181-405 |
| Cow position: | chr16:10374920-10374696 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 18, 154 |
| Conread position: | 182-401 |
| Cow position: | chr16:40557268-40557048 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 20, 148 |
| Conread position: | 183-405 |
| Cow position: | chr16:19778971-19778751 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 19, 138 |
| Conread position: | 200-405 |
| Cow position: | chr16:16898155-16898354 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 65, 85 |
| Conread position: | 205-377 |
| Cow position: | chr16:41753918-41753738 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 15, 146 |
| Conread position: | 220-405 |
| Cow position: | chr16:34504265-34504443 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 161, 16 |
| Conread position: | 255-405 |
| Cow position: | chr16:32779197-32779048 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 78, 0 |
Show alignments to all cow chromosomes.