Cow genome map
| Conread name: | rpigcf0_002377.y1 |
| Conread position: | 160-401 |
| Cow position: | chr21:3780289-3780530 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 42, 175 |
| Conread position: | 160-401 |
| Cow position: | chr21:40270156-40269915 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 221, 174 |
| Conread position: | 168-380 |
| Cow position: | chr21:49296398-49296600 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 11, 44 |
| Conread position: | 169-366 |
| Cow position: | chr21:23804604-23804406 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 156 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 32, 167 |
| Conread position: | 169-377 |
| Cow position: | chr21:29004015-29003801 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 169 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 170-378 |
| Cow position: | chr21:25125136-25125343 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 31, 89 |
| Conread position: | 170-394 |
| Cow position: | chr21:29257555-29257350 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 170-401 |
| Cow position: | chr21:5839661-5839431 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 32, 138 |
| Conread position: | 170-405 |
| Cow position: | chr21:28985626-28985856 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 31, 11 |
| Conread position: | 170-405 |
| Cow position: | chr21:31639441-31639674 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 105, 17 |
| Conread position: | 171-361 |
| Cow position: | chr21:15941204-15941390 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 160, 70 |
| Conread position: | 171-377 |
| Cow position: | chr21:468426-468632 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 31, 16 |
| Conread position: | 171-402 |
| Cow position: | chr21:20743097-20742882 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 30, 46 |
| Conread position: | 171-402 |
| Cow position: | chr21:24085277-24085045 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 39, 170 |
| Conread position: | 171-405 |
| Cow position: | chr21:1286687-1286454 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 31, 96 |
| Conread position: | 171-405 |
| Cow position: | chr21:21520139-21520364 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 30, 48 |
| Conread position: | 171-405 |
| Cow position: | chr21:34655362-34655589 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 32, 98 |
| Conread position: | 172-399 |
| Cow position: | chr21:30563201-30563425 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 30, 96 |
| Conread position: | 172-401 |
| Cow position: | chr21:5018667-5018897 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 30, 163 |
| Conread position: | 172-401 |
| Cow position: | chr21:10568231-10568456 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 30, 40 |
| Conread position: | 172-401 |
| Cow position: | chr21:10851604-10851834 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 30, 85 |
| Conread position: | 172-401 |
| Cow position: | chr21:27069433-27069207 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 30, 87 |
| Conread position: | 172-401 |
| Cow position: | chr21:33253710-33253938 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 30, 163 |
| Conread position: | 172-401 |
| Cow position: | chr21:47646861-47647088 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 15, 91 |
| Conread position: | 172-405 |
| Cow position: | chr21:147451-147682 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 31, 108 |
| Conread position: | 172-405 |
| Cow position: | chr21:2880294-2880064 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 30, 96 |
| Conread position: | 172-405 |
| Cow position: | chr21:47942476-47942710 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 38, 163 |
| Conread position: | 173-405 |
| Cow position: | chr21:38023658-38023889 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 56, 15 |
| Conread position: | 175-364 |
| Cow position: | chr21:36979380-36979191 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 26, 118 |
| Conread position: | 177-364 |
| Cow position: | chr21:42914897-42915084 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 25, 158 |
| Conread position: | 178-394 |
| Cow position: | chr21:2512382-2512599 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 32, 158 |
| Conread position: | 178-399 |
| Cow position: | chr21:12054484-12054262 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 24, 157 |
| Conread position: | 178-405 |
| Cow position: | chr21:2539552-2539317 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 178-405 |
| Cow position: | chr21:4564999-4565222 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 23, 107 |
| Conread position: | 178-405 |
| Cow position: | chr21:6414491-6414263 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 24, 157 |
| Conread position: | 178-405 |
| Cow position: | chr21:38801970-38802198 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 25, 157 |
| Conread position: | 179-394 |
| Cow position: | chr21:4182094-4182303 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 31, 19 |
| Conread position: | 180-405 |
| Cow position: | chr21:41404850-41405077 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 21, 154 |
| Conread position: | 181-380 |
| Cow position: | chr21:39480086-39479897 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 183-405 |
| Cow position: | chr21:37372773-37372987 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 19, 54 |
| Conread position: | 184-335 |
| Cow position: | chr21:4588463-4588314 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 74, 111 |
| Conread position: | 200-405 |
| Cow position: | chr21:11507170-11507375 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 181, 140 |
| Conread position: | 200-405 |
| Cow position: | chr21:26635601-26635396 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 181, 134 |
| Conread position: | 201-405 |
| Cow position: | chr21:21943024-21942823 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 187, 133 |
| Conread position: | 205-390 |
| Cow position: | chr21:18816690-18816508 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 176, 59 |
| Conread position: | 205-401 |
| Cow position: | chr21:30597907-30597713 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 176, 59 |
| Conread position: | 211-405 |
| Cow position: | chr21:33710716-33710910 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 170, 123 |
| Conread position: | 217-405 |
| Cow position: | chr21:9893548-9893730 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 164, 12 |
Show alignments to all cow chromosomes.