Cow genome map
| Conread name: | rpigcf0_002377.y1 |
| Conread position: | 155-405 |
| Cow position: | chr22:36270516-36270767 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 46, 23 |
| Conread position: | 159-399 |
| Cow position: | chr22:21590765-21591006 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 43, 176 |
| Conread position: | 160-399 |
| Cow position: | chr22:44397775-44398013 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 56, 148 |
| Conread position: | 164-394 |
| Cow position: | chr22:10303986-10303761 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 125, 26 |
| Conread position: | 164-394 |
| Cow position: | chr22:44518290-44518064 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 28, 137 |
| Conread position: | 164-405 |
| Cow position: | chr22:1268404-1268163 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 38, 14 |
| Conread position: | 170-373 |
| Cow position: | chr22:9045627-9045824 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 170-401 |
| Cow position: | chr22:46614657-46614889 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 32, 165 |
| Conread position: | 170-402 |
| Cow position: | chr22:290343-290116 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 180 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 31, 42 |
| Conread position: | 170-405 |
| Cow position: | chr22:41474335-41474116 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 17, 34 |
| Conread position: | 171-347 |
| Cow position: | chr22:40370833-40371001 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 31, 53 |
| Conread position: | 171-361 |
| Cow position: | chr22:316861-317049 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 30, 16 |
| Conread position: | 171-401 |
| Cow position: | chr22:29011917-29011690 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 31, 49 |
| Conread position: | 171-401 |
| Cow position: | chr22:36185113-36185338 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 31, 8 |
| Conread position: | 171-401 |
| Cow position: | chr22:46585209-46584983 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 32, 88 |
| Conread position: | 171-402 |
| Cow position: | chr22:41241579-41241806 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 179 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 36, 99 |
| Conread position: | 171-405 |
| Cow position: | chr22:1281379-1281145 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 39, 87 |
| Conread position: | 171-405 |
| Cow position: | chr22:3305244-3305013 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 29, 88 |
| Conread position: | 171-405 |
| Cow position: | chr22:11807388-11807151 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 17, 166 |
| Conread position: | 171-405 |
| Cow position: | chr22:13773875-13774106 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 42, 166 |
| Conread position: | 171-405 |
| Cow position: | chr22:15852778-15853012 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 31, 96 |
| Conread position: | 171-405 |
| Cow position: | chr22:21035035-21034800 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 39, 164 |
| Conread position: | 171-405 |
| Cow position: | chr22:35906036-35905797 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 33, 168 |
| Conread position: | 172-378 |
| Cow position: | chr22:15054016-15054218 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 29, 109 |
| Conread position: | 172-394 |
| Cow position: | chr22:1519664-1519451 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 27, 44 |
| Conread position: | 172-401 |
| Cow position: | chr22:522037-521808 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 30, 149 |
| Conread position: | 172-401 |
| Cow position: | chr22:6333069-6333294 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 30, 91 |
| Conread position: | 172-401 |
| Cow position: | chr22:17327102-17326872 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 30, 163 |
| Conread position: | 172-401 |
| Cow position: | chr22:18815009-18814779 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 31, 163 |
| Conread position: | 172-401 |
| Cow position: | chr22:31333688-31333463 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 209, 38 |
| Conread position: | 172-401 |
| Cow position: | chr22:34169696-34169921 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 30, 40 |
| Conread position: | 172-401 |
| Cow position: | chr22:36860192-36859962 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 30, 163 |
| Conread position: | 172-401 |
| Cow position: | chr22:37292318-37292092 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 31, 96 |
| Conread position: | 172-401 |
| Cow position: | chr22:39468158-39467932 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 30, 96 |
| Conread position: | 172-401 |
| Cow position: | chr22:42992532-42992761 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 30, 46 |
| Conread position: | 172-401 |
| Cow position: | chr22:44935324-44935548 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 30, 91 |
| Conread position: | 172-404 |
| Cow position: | chr22:3803536-3803770 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 32, 97 |
| Conread position: | 172-405 |
| Cow position: | chr22:3272746-3272499 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 29, 9 |
| Conread position: | 174-381 |
| Cow position: | chr22:23800859-23800654 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 27, 129 |
| Conread position: | 177-380 |
| Cow position: | chr22:44366745-44366543 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 25, 60 |
| Conread position: | 177-399 |
| Cow position: | chr22:30677353-30677130 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 22, 158 |
| Conread position: | 178-401 |
| Cow position: | chr22:46580356-46580132 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 24, 52 |
| Conread position: | 178-405 |
| Cow position: | chr22:694978-695202 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 24, 142 |
| Conread position: | 178-405 |
| Cow position: | chr22:11803689-11803463 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 24, 106 |
| Conread position: | 178-405 |
| Cow position: | chr22:21195135-21194908 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 171 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 24, 59 |
| Conread position: | 179-405 |
| Cow position: | chr22:3276994-3276767 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 23, 156 |
| Conread position: | 179-405 |
| Cow position: | chr22:44478111-44478332 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 202, 18 |
| Conread position: | 181-377 |
| Cow position: | chr22:13673441-13673256 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 20, 51 |
| Conread position: | 181-401 |
| Cow position: | chr22:15352237-15352458 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 11, 122 |
| Conread position: | 183-405 |
| Cow position: | chr22:1880170-1880394 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 16, 153 |
| Conread position: | 183-405 |
| Cow position: | chr22:35670298-35670076 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 19, 76 |
| Conread position: | 191-380 |
| Cow position: | chr22:23430952-23430770 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 18, 34 |
| Conread position: | 200-380 |
| Cow position: | chr22:15310555-15310376 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 211-405 |
| Cow position: | chr22:38960502-38960695 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 170, 121 |
| Conread position: | 215-405 |
| Cow position: | chr22:8736942-8736758 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 166, 41 |
| Conread position: | 218-405 |
| Cow position: | chr22:23752303-23752118 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 156, 83 |
| Conread position: | 243-405 |
| Cow position: | chr22:6022080-6022242 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 138, 91 |
| Conread position: | 251-405 |
| Cow position: | chr22:32283246-32283092 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 130, 83 |
Show alignments to all cow chromosomes.