Cow genome map
| Conread name: | rpigcf0_002377.y1 |
| Conread position: | 159-292 |
| Cow position: | chr28:14194165-14194033 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 5, 112 |
| Conread position: | 170-352 |
| Cow position: | chr28:10651352-10651169 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 50, 165 |
| Conread position: | 170-380 |
| Cow position: | chr28:10471064-10471265 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 32, 98 |
| Conread position: | 170-394 |
| Cow position: | chr28:24559005-24559224 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 164, 0 |
| Conread position: | 170-401 |
| Cow position: | chr28:1216432-1216204 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 32, 98 |
| Conread position: | 170-401 |
| Cow position: | chr28:7741834-7742064 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 32, 94 |
| Conread position: | 170-401 |
| Cow position: | chr28:8380436-8380668 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 173 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 32, 165 |
| Conread position: | 170-401 |
| Cow position: | chr28:15034713-15034480 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 17, 166 |
| Conread position: | 170-405 |
| Cow position: | chr28:6786657-6786886 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 42, 97 |
| Conread position: | 171-402 |
| Cow position: | chr28:698681-698908 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 32, 59 |
| Conread position: | 171-405 |
| Cow position: | chr28:1386005-1385775 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 30, 93 |
| Conread position: | 171-405 |
| Cow position: | chr28:5766131-5766366 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 31, 165 |
| Conread position: | 171-405 |
| Cow position: | chr28:5799691-5799927 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 31, 165 |
| Conread position: | 171-405 |
| Cow position: | chr28:27679545-27679774 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 36, 147 |
| Conread position: | 172-362 |
| Cow position: | chr28:14703984-14703792 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 38, 165 |
| Conread position: | 172-380 |
| Cow position: | chr28:34595633-34595841 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 30, 163 |
| Conread position: | 172-397 |
| Cow position: | chr28:784064-784285 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 30, 40 |
| Conread position: | 172-399 |
| Cow position: | chr28:2085866-2086094 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 30, 163 |
| Conread position: | 172-399 |
| Cow position: | chr28:18100093-18099870 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 175 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 27, 19 |
| Conread position: | 172-400 |
| Cow position: | chr28:12151731-12151955 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 27, 92 |
| Conread position: | 172-400 |
| Cow position: | chr28:22259749-22259524 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 30, 91 |
| Conread position: | 172-401 |
| Cow position: | chr28:1166488-1166262 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 38, 93 |
| Conread position: | 172-401 |
| Cow position: | chr28:1506268-1506497 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 38, 65 |
| Conread position: | 172-401 |
| Cow position: | chr28:3190851-3190621 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 30, 163 |
| Conread position: | 172-401 |
| Cow position: | chr28:5750298-5750072 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 30, 53 |
| Conread position: | 172-401 |
| Cow position: | chr28:7003399-7003627 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 30, 87 |
| Conread position: | 172-401 |
| Cow position: | chr28:10580472-10580243 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 30, 77 |
| Conread position: | 172-401 |
| Cow position: | chr28:12408824-12408596 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 27, 161 |
| Conread position: | 172-401 |
| Cow position: | chr28:17389803-17390032 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 30, 95 |
| Conread position: | 172-401 |
| Cow position: | chr28:17665906-17665676 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 171 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 30, 163 |
| Conread position: | 172-401 |
| Cow position: | chr28:18519046-18518816 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 38, 162 |
| Conread position: | 172-401 |
| Cow position: | chr28:26424857-26424631 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 30, 94 |
| Conread position: | 172-401 |
| Cow position: | chr28:33253710-33253945 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 30, 177 |
| Conread position: | 172-401 |
| Cow position: | chr28:33637943-33638175 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 38, 165 |
| Conread position: | 172-405 |
| Cow position: | chr28:5803423-5803655 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 176 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 29, 99 |
| Conread position: | 172-405 |
| Cow position: | chr28:5938889-5939123 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 38, 163 |
| Conread position: | 172-405 |
| Cow position: | chr28:32790990-32790764 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 38, 93 |
| Conread position: | 173-394 |
| Cow position: | chr28:18146338-18146121 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 37, 52 |
| Conread position: | 173-405 |
| Cow position: | chr28:8719549-8719321 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 215, 108 |
| Conread position: | 173-405 |
| Cow position: | chr28:15587478-15587703 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 28, 101 |
| Conread position: | 173-405 |
| Cow position: | chr28:17381469-17381236 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 27, 138 |
| Conread position: | 178-402 |
| Cow position: | chr28:6537403-6537178 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 24, 157 |
| Conread position: | 179-405 |
| Cow position: | chr28:1459503-1459730 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 23, 156 |
| Conread position: | 179-405 |
| Cow position: | chr28:10615595-10615367 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 20, 158 |
| Conread position: | 180-405 |
| Cow position: | chr28:13604171-13604394 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 21, 129 |
| Conread position: | 182-405 |
| Cow position: | chr28:7827401-7827616 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 20, 92 |
| Conread position: | 205-336 |
| Cow position: | chr28:6350061-6350193 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 220-405 |
| Cow position: | chr28:8784766-8784947 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 114, 51 |
| Conread position: | 221-399 |
| Cow position: | chr28:11489424-11489247 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 114, 50 |
| Conread position: | 224-401 |
| Cow position: | chr28:13461425-13461602 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 157, 110 |
| Conread position: | 259-405 |
| Cow position: | chr28:15673818-15673966 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 12, 39 |
| Conread position: | 260-405 |
| Cow position: | chr28:1765470-1765617 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 75, 0 |
Show alignments to all cow chromosomes.