Cow genome map
| Conread name: | rpigcf0_002377.y1 |
| Conread position: | 164-405 |
| Cow position: | chr29:45461104-45461345 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 38, 171 |
| Conread position: | 169-405 |
| Cow position: | chr29:14112908-14113141 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 12, 91 |
| Conread position: | 169-405 |
| Cow position: | chr29:19526924-19526687 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 33, 165 |
| Conread position: | 170-339 |
| Cow position: | chr29:12793589-12793755 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 31, 11 |
| Conread position: | 170-374 |
| Cow position: | chr29:16166234-16166039 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 29, 83 |
| Conread position: | 170-380 |
| Cow position: | chr29:4516927-4517133 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 31, 158 |
| Conread position: | 170-400 |
| Cow position: | chr29:34798448-34798217 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 32, 165 |
| Conread position: | 170-401 |
| Cow position: | chr29:10822557-10822323 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 15, 99 |
| Conread position: | 170-401 |
| Cow position: | chr29:14587282-14587514 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 32, 67 |
| Conread position: | 170-405 |
| Cow position: | chr29:14098108-14098344 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 22, 164 |
| Conread position: | 170-405 |
| Cow position: | chr29:37165455-37165682 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 13, 68 |
| Conread position: | 171-390 |
| Cow position: | chr29:34551729-34551949 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 97, 162 |
| Conread position: | 171-401 |
| Cow position: | chr29:42803761-42803986 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 45, 8 |
| Conread position: | 171-405 |
| Cow position: | chr29:13851509-13851272 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 31, 165 |
| Conread position: | 171-405 |
| Cow position: | chr29:27262350-27262113 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 164, 39 |
| Conread position: | 172-333 |
| Cow position: | chr29:5981343-5981184 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 30, 130 |
| Conread position: | 172-335 |
| Cow position: | chr29:409883-409719 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 172-400 |
| Cow position: | chr29:39078346-39078117 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 31, 163 |
| Conread position: | 172-401 |
| Cow position: | chr29:2101204-2101434 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 28, 163 |
| Conread position: | 172-401 |
| Cow position: | chr29:2839977-2839748 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 30, 171 |
| Conread position: | 172-401 |
| Cow position: | chr29:5236386-5236616 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 30, 163 |
| Conread position: | 172-401 |
| Cow position: | chr29:5958943-5959170 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 30, 87 |
| Conread position: | 172-401 |
| Cow position: | chr29:6264635-6264405 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 173 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 30, 163 |
| Conread position: | 172-401 |
| Cow position: | chr29:7429759-7429525 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 30, 93 |
| Conread position: | 172-401 |
| Cow position: | chr29:15997285-15997057 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 30, 65 |
| Conread position: | 172-401 |
| Cow position: | chr29:16023929-16024158 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 30, 74 |
| Conread position: | 172-401 |
| Cow position: | chr29:16345579-16345807 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 38, 58 |
| Conread position: | 172-401 |
| Cow position: | chr29:19621912-19621677 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 30, 93 |
| Conread position: | 172-401 |
| Cow position: | chr29:19654989-19655215 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 30, 96 |
| Conread position: | 172-401 |
| Cow position: | chr29:26163469-26163238 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 30, 164 |
| Conread position: | 172-401 |
| Cow position: | chr29:38228343-38228573 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 30, 114 |
| Conread position: | 172-401 |
| Cow position: | chr29:43324888-43325111 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 38, 53 |
| Conread position: | 172-405 |
| Cow position: | chr29:4633259-4633034 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 179 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 27, 85 |
| Conread position: | 173-347 |
| Cow position: | chr29:15993880-15993709 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 16, 78 |
| Conread position: | 173-405 |
| Cow position: | chr29:36635006-36634784 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 29, 70 |
| Conread position: | 176-401 |
| Cow position: | chr29:2691532-2691757 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 26, 159 |
| Conread position: | 178-354 |
| Cow position: | chr29:3328710-3328886 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 24, 157 |
| Conread position: | 178-401 |
| Cow position: | chr29:30259167-30258954 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 21, 90 |
| Conread position: | 178-405 |
| Cow position: | chr29:29502888-29502660 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 24, 157 |
| Conread position: | 178-405 |
| Cow position: | chr29:32558380-32558152 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 24, 157 |
| Conread position: | 179-394 |
| Cow position: | chr29:38713042-38713253 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 23, 142 |
| Conread position: | 180-394 |
| Cow position: | chr29:19888960-19889174 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 22, 79 |
| Conread position: | 182-405 |
| Cow position: | chr29:13622483-13622259 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 20, 153 |
| Conread position: | 193-402 |
| Cow position: | chr29:9641399-9641189 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 64, 142 |
| Conread position: | 195-405 |
| Cow position: | chr29:6408735-6408525 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 5, 36 |
| Conread position: | 204-405 |
| Cow position: | chr29:19954024-19954221 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 177, 54 |
| Conread position: | 211-401 |
| Cow position: | chr29:23977528-23977718 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 166, 123 |
| Conread position: | 213-401 |
| Cow position: | chr29:47048-46866 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 54, 0 |
Show alignments to all cow chromosomes.