Cow genome map

Conread name: rpigcf0_002377.y1

Conread position: 159-306
Cow position: chr3:40616577-40616430 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 42, 19

Conread position: 159-394
Cow position: chr3:19755686-19755458 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 164
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 33, 92

Conread position: 160-347
Cow position: chr3:595405-595591 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 139
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 42, 106

Conread position: 160-401
Cow position: chr3:48058092-48057850 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 177
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 42, 175

Conread position: 164-355
Cow position: chr3:34198144-34198336 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 136
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 39, 14

Conread position: 164-399
Cow position: chr3:32200294-32200525 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 168
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 39, 15

Conread position: 168-405
Cow position: chr3:18943305-18943533 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 174
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 60, 0

Conread position: 169-405
Cow position: chr3:63002281-63002047 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 172
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 33, 90

Conread position: 169-405
Cow position: chr3:64823385-64823619 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 172
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 32, 94

Conread position: 170-357
Cow position: chr3:46017332-46017513 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 141
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 31, 44

Conread position: 170-364
Cow position: chr3:10240932-10241126 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 144
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 40, 163

Conread position: 170-366
Cow position: chr3:77579140-77578947 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 139
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 32, 97

Conread position: 170-377
Cow position: chr3:7313195-7312986 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 154
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 34, 9

Conread position: 170-402
Cow position: chr3:65207943-65207711 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 156
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 13, 164

Conread position: 170-405
Cow position: chr3:27864456-27864689 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 164
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 40, 132

Conread position: 170-405
Cow position: chr3:38494520-38494749 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 162
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 31, 129

Conread position: 170-405
Cow position: chr3:52653381-52653148 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 179
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 31, 37

Conread position: 170-405
Cow position: chr3:53412408-53412639 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 175
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 31, 127

Conread position: 171-394
Cow position: chr3:24644504-24644714 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 159
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 30, 68

Conread position: 171-401
Cow position: chr3:19720382-19720149 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 176
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 16, 135

Conread position: 171-401
Cow position: chr3:56146583-56146815 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 163
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 45, 0

Conread position: 171-405
Cow position: chr3:2854166-2853931 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 162
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 45, 163

Conread position: 171-405
Cow position: chr3:2906489-2906242 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 173
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 31, 82

Conread position: 171-405
Cow position: chr3:3840233-3840002 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 164
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 204, 32

Conread position: 171-405
Cow position: chr3:63240966-63240729 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 166
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 39, 100

Conread position: 172-335
Cow position: chr3:29579910-29580074 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 115
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 32, 0

Conread position: 172-335
Cow position: chr3:36877371-36877207 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 30, 0

Conread position: 172-359
Cow position: chr3:5993799-5993613 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 141
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 30, 62

Conread position: 172-361
Cow position: chr3:38867598-38867787 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 140
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 30, 163

Conread position: 172-380
Cow position: chr3:78026132-78025932 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 148
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 30, 93

Conread position: 172-394
Cow position: chr3:7478636-7478411 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 156
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 44, 165

Conread position: 172-394
Cow position: chr3:33843538-33843326 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 159
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 15, 29

Conread position: 172-394
Cow position: chr3:40824673-40824896 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 162
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 30, 163

Conread position: 172-398
Cow position: chr3:21181412-21181189 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 165
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 38, 94

Conread position: 172-399
Cow position: chr3:49136284-49136057 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 170
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 30, 123

Conread position: 172-401
Cow position: chr3:2709586-2709359 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 164
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 38, 114

Conread position: 172-401
Cow position: chr3:5884812-5885039 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 161
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 34, 87

Conread position: 172-401
Cow position: chr3:18812779-18813009 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 169
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 30, 163

Conread position: 172-401
Cow position: chr3:23206591-23206363 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 164
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 209, 52

Conread position: 172-401
Cow position: chr3:34029639-34029410 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 167
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 31, 66

Conread position: 172-401
Cow position: chr3:42448397-42448626 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 161
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 38, 87

Conread position: 172-401
Cow position: chr3:49543923-49543701 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 161
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 30, 79

Conread position: 172-401
Cow position: chr3:51938818-51938593 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 158
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 30, 42

Conread position: 172-401
Cow position: chr3:53516885-53517120 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 160
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 30, 168

Conread position: 172-401
Cow position: chr3:57483442-57483215 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 165
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 27, 92

Conread position: 172-401
Cow position: chr3:64016084-64015857 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 165
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 30, 87

Conread position: 172-405
Cow position: chr3:3058096-3058328 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 165
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 30, 112

Conread position: 172-405
Cow position: chr3:67164560-67164793 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 171
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 20, 165

Conread position: 173-376
Cow position: chr3:73302551-73302746 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 142
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 28, 97

Conread position: 173-405
Cow position: chr3:34090200-34089973 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 163
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 28, 17

Conread position: 178-347
Cow position: chr3:45975797-45975967 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 125
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 35, 157

Conread position: 178-373
Cow position: chr3:5430482-5430295 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 145
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 23, 74

Conread position: 178-380
Cow position: chr3:30617633-30617431 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 147
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 24, 157

Conread position: 178-398
Cow position: chr3:68872468-68872246 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 157
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 24, 157

Conread position: 178-401
Cow position: chr3:3524302-3524522 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 161
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 24, 81

Conread position: 178-402
Cow position: chr3:1742618-1742843 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 164
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 24, 157

Conread position: 178-402
Cow position: chr3:6783654-6783880 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 165
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 24, 158

Conread position: 178-405
Cow position: chr3:2918756-2918979 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 164
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 24, 157

Conread position: 178-405
Cow position: chr3:27919714-27919942 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 165
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 32, 157

Conread position: 178-405
Cow position: chr3:29575837-29575609 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 168
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 24, 157

Conread position: 178-405
Cow position: chr3:32621754-32621526 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 162
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 216, 0

Conread position: 178-405
Cow position: chr3:41209315-41209087 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 164
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 24, 157

Conread position: 178-405
Cow position: chr3:45034026-45034254 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 164
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 32, 157

Conread position: 178-405
Cow position: chr3:47080123-47079895 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 167
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 24, 59

Conread position: 178-405
Cow position: chr3:51364499-51364274 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 167
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 24, 95

Conread position: 179-334
Cow position: chr3:59862657-59862816 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 12, 0

Conread position: 179-371
Cow position: chr3:77424895-77425079 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 138
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 101, 18

Conread position: 179-405
Cow position: chr3:66889679-66889455 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 159
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 24, 103

Conread position: 181-402
Cow position: chr3:48843546-48843768 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 162
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 21, 149

Conread position: 182-397
Cow position: chr3:23289043-23288827 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 157
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 20, 153

Conread position: 182-405
Cow position: chr3:29329999-29329775 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 161
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 20, 153

Conread position: 190-377
Cow position: chr3:55892692-55892874 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 133
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 11, 75

Conread position: 203-385
Cow position: chr3:37626314-37626491 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 143
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 178, 10

Conread position: 242-401
Cow position: chr3:69932482-69932323 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 117
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 139, 92

Show alignments to all cow chromosomes.