Cow genome map
| Conread name: | rpigcf0_002377.y1 |
| Conread position: | 159-306 |
| Cow position: | chr3:40616577-40616430 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 42, 19 |
| Conread position: | 159-394 |
| Cow position: | chr3:19755686-19755458 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 33, 92 |
| Conread position: | 160-347 |
| Cow position: | chr3:595405-595591 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 42, 106 |
| Conread position: | 160-401 |
| Cow position: | chr3:48058092-48057850 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 42, 175 |
| Conread position: | 164-355 |
| Cow position: | chr3:34198144-34198336 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 39, 14 |
| Conread position: | 164-399 |
| Cow position: | chr3:32200294-32200525 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 39, 15 |
| Conread position: | 168-405 |
| Cow position: | chr3:18943305-18943533 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 169-405 |
| Cow position: | chr3:63002281-63002047 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 33, 90 |
| Conread position: | 169-405 |
| Cow position: | chr3:64823385-64823619 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 32, 94 |
| Conread position: | 170-357 |
| Cow position: | chr3:46017332-46017513 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 31, 44 |
| Conread position: | 170-364 |
| Cow position: | chr3:10240932-10241126 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 40, 163 |
| Conread position: | 170-366 |
| Cow position: | chr3:77579140-77578947 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 32, 97 |
| Conread position: | 170-377 |
| Cow position: | chr3:7313195-7312986 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 34, 9 |
| Conread position: | 170-402 |
| Cow position: | chr3:65207943-65207711 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 13, 164 |
| Conread position: | 170-405 |
| Cow position: | chr3:27864456-27864689 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 40, 132 |
| Conread position: | 170-405 |
| Cow position: | chr3:38494520-38494749 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 31, 129 |
| Conread position: | 170-405 |
| Cow position: | chr3:52653381-52653148 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 31, 37 |
| Conread position: | 170-405 |
| Cow position: | chr3:53412408-53412639 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 31, 127 |
| Conread position: | 171-394 |
| Cow position: | chr3:24644504-24644714 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 30, 68 |
| Conread position: | 171-401 |
| Cow position: | chr3:19720382-19720149 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 16, 135 |
| Conread position: | 171-401 |
| Cow position: | chr3:56146583-56146815 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 171-405 |
| Cow position: | chr3:2854166-2853931 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 45, 163 |
| Conread position: | 171-405 |
| Cow position: | chr3:2906489-2906242 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 31, 82 |
| Conread position: | 171-405 |
| Cow position: | chr3:3840233-3840002 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 204, 32 |
| Conread position: | 171-405 |
| Cow position: | chr3:63240966-63240729 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 39, 100 |
| Conread position: | 172-335 |
| Cow position: | chr3:29579910-29580074 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 172-335 |
| Cow position: | chr3:36877371-36877207 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 172-359 |
| Cow position: | chr3:5993799-5993613 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 30, 62 |
| Conread position: | 172-361 |
| Cow position: | chr3:38867598-38867787 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 30, 163 |
| Conread position: | 172-380 |
| Cow position: | chr3:78026132-78025932 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 30, 93 |
| Conread position: | 172-394 |
| Cow position: | chr3:7478636-7478411 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 44, 165 |
| Conread position: | 172-394 |
| Cow position: | chr3:33843538-33843326 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 15, 29 |
| Conread position: | 172-394 |
| Cow position: | chr3:40824673-40824896 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 30, 163 |
| Conread position: | 172-398 |
| Cow position: | chr3:21181412-21181189 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 38, 94 |
| Conread position: | 172-399 |
| Cow position: | chr3:49136284-49136057 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 30, 123 |
| Conread position: | 172-401 |
| Cow position: | chr3:2709586-2709359 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 38, 114 |
| Conread position: | 172-401 |
| Cow position: | chr3:5884812-5885039 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 34, 87 |
| Conread position: | 172-401 |
| Cow position: | chr3:18812779-18813009 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 30, 163 |
| Conread position: | 172-401 |
| Cow position: | chr3:23206591-23206363 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 209, 52 |
| Conread position: | 172-401 |
| Cow position: | chr3:34029639-34029410 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 31, 66 |
| Conread position: | 172-401 |
| Cow position: | chr3:42448397-42448626 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 38, 87 |
| Conread position: | 172-401 |
| Cow position: | chr3:49543923-49543701 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 30, 79 |
| Conread position: | 172-401 |
| Cow position: | chr3:51938818-51938593 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 30, 42 |
| Conread position: | 172-401 |
| Cow position: | chr3:53516885-53517120 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 30, 168 |
| Conread position: | 172-401 |
| Cow position: | chr3:57483442-57483215 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 27, 92 |
| Conread position: | 172-401 |
| Cow position: | chr3:64016084-64015857 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 30, 87 |
| Conread position: | 172-405 |
| Cow position: | chr3:3058096-3058328 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 30, 112 |
| Conread position: | 172-405 |
| Cow position: | chr3:67164560-67164793 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 20, 165 |
| Conread position: | 173-376 |
| Cow position: | chr3:73302551-73302746 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 28, 97 |
| Conread position: | 173-405 |
| Cow position: | chr3:34090200-34089973 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 28, 17 |
| Conread position: | 178-347 |
| Cow position: | chr3:45975797-45975967 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 35, 157 |
| Conread position: | 178-373 |
| Cow position: | chr3:5430482-5430295 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 23, 74 |
| Conread position: | 178-380 |
| Cow position: | chr3:30617633-30617431 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 24, 157 |
| Conread position: | 178-398 |
| Cow position: | chr3:68872468-68872246 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 24, 157 |
| Conread position: | 178-401 |
| Cow position: | chr3:3524302-3524522 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 24, 81 |
| Conread position: | 178-402 |
| Cow position: | chr3:1742618-1742843 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 24, 157 |
| Conread position: | 178-402 |
| Cow position: | chr3:6783654-6783880 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 24, 158 |
| Conread position: | 178-405 |
| Cow position: | chr3:2918756-2918979 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 24, 157 |
| Conread position: | 178-405 |
| Cow position: | chr3:27919714-27919942 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 32, 157 |
| Conread position: | 178-405 |
| Cow position: | chr3:29575837-29575609 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 24, 157 |
| Conread position: | 178-405 |
| Cow position: | chr3:32621754-32621526 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 216, 0 |
| Conread position: | 178-405 |
| Cow position: | chr3:41209315-41209087 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 24, 157 |
| Conread position: | 178-405 |
| Cow position: | chr3:45034026-45034254 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 32, 157 |
| Conread position: | 178-405 |
| Cow position: | chr3:47080123-47079895 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 24, 59 |
| Conread position: | 178-405 |
| Cow position: | chr3:51364499-51364274 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 24, 95 |
| Conread position: | 179-334 |
| Cow position: | chr3:59862657-59862816 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 179-371 |
| Cow position: | chr3:77424895-77425079 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 101, 18 |
| Conread position: | 179-405 |
| Cow position: | chr3:66889679-66889455 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 24, 103 |
| Conread position: | 181-402 |
| Cow position: | chr3:48843546-48843768 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 21, 149 |
| Conread position: | 182-397 |
| Cow position: | chr3:23289043-23288827 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 20, 153 |
| Conread position: | 182-405 |
| Cow position: | chr3:29329999-29329775 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 20, 153 |
| Conread position: | 190-377 |
| Cow position: | chr3:55892692-55892874 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 11, 75 |
| Conread position: | 203-385 |
| Cow position: | chr3:37626314-37626491 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 178, 10 |
| Conread position: | 242-401 |
| Cow position: | chr3:69932482-69932323 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 139, 92 |
Show alignments to all cow chromosomes.