Cow genome map
| Conread name: | rpigcf0_002377.y1 |
| Conread position: | 169-394 |
| Cow position: | chr5:59283500-59283726 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 30, 166 |
| Conread position: | 169-405 |
| Cow position: | chr5:41960562-41960325 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 41, 166 |
| Conread position: | 170-305 |
| Cow position: | chr5:29767306-29767444 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 170-335 |
| Cow position: | chr5:16917290-16917132 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 128, 28 |
| Conread position: | 170-377 |
| Cow position: | chr5:62760075-62759874 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 11, 28 |
| Conread position: | 170-397 |
| Cow position: | chr5:18885350-18885117 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 31, 22 |
| Conread position: | 170-397 |
| Cow position: | chr5:42751665-42751885 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 211, 33 |
| Conread position: | 170-401 |
| Cow position: | chr5:57481356-57481122 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 9, 167 |
| Conread position: | 170-402 |
| Cow position: | chr5:40923462-40923238 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 20, 98 |
| Conread position: | 170-405 |
| Cow position: | chr5:18400504-18400276 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 30, 11 |
| Conread position: | 170-405 |
| Cow position: | chr5:23686714-23686495 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 31, 49 |
| Conread position: | 170-405 |
| Cow position: | chr5:34298100-34298321 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 31, 112 |
| Conread position: | 170-405 |
| Cow position: | chr5:50947816-50948054 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 31, 139 |
| Conread position: | 170-405 |
| Cow position: | chr5:52434926-52435156 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 40, 49 |
| Conread position: | 170-405 |
| Cow position: | chr5:62823674-62823907 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 31, 89 |
| Conread position: | 171-377 |
| Cow position: | chr5:54620236-54620436 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 28, 10 |
| Conread position: | 171-401 |
| Cow position: | chr5:2915629-2915851 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 31, 8 |
| Conread position: | 171-401 |
| Cow position: | chr5:7142878-7142648 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 31, 97 |
| Conread position: | 171-405 |
| Cow position: | chr5:55834614-55834390 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 208, 26 |
| Conread position: | 172-356 |
| Cow position: | chr5:4386424-4386607 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 27, 163 |
| Conread position: | 172-361 |
| Cow position: | chr5:30580531-30580720 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 30, 163 |
| Conread position: | 172-377 |
| Cow position: | chr5:54791445-54791241 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 30, 158 |
| Conread position: | 172-380 |
| Cow position: | chr5:40789252-40789452 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 29, 52 |
| Conread position: | 172-384 |
| Cow position: | chr5:28242219-28242425 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 29, 93 |
| Conread position: | 172-399 |
| Cow position: | chr5:3502921-3502692 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 30, 164 |
| Conread position: | 172-401 |
| Cow position: | chr5:4070408-4070633 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 38, 79 |
| Conread position: | 172-401 |
| Cow position: | chr5:6153712-6153481 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 30, 164 |
| Conread position: | 172-401 |
| Cow position: | chr5:7275027-7275251 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 30, 87 |
| Conread position: | 172-401 |
| Cow position: | chr5:10855630-10855400 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 30, 163 |
| Conread position: | 172-401 |
| Cow position: | chr5:24099848-24100066 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 30, 53 |
| Conread position: | 172-401 |
| Cow position: | chr5:24295802-24296028 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 30, 110 |
| Conread position: | 172-401 |
| Cow position: | chr5:37733536-37733766 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 30, 163 |
| Conread position: | 172-401 |
| Cow position: | chr5:46737402-46737177 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 30, 87 |
| Conread position: | 172-401 |
| Cow position: | chr5:49519743-49519965 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 30, 59 |
| Conread position: | 172-401 |
| Cow position: | chr5:55629181-55629404 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 30, 96 |
| Conread position: | 172-401 |
| Cow position: | chr5:64780828-64780597 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 30, 164 |
| Conread position: | 172-405 |
| Cow position: | chr5:18560219-18559984 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 30, 93 |
| Conread position: | 173-396 |
| Cow position: | chr5:23668945-23668725 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 28, 14 |
| Conread position: | 173-405 |
| Cow position: | chr5:28333297-28333064 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 19, 161 |
| Conread position: | 178-336 |
| Cow position: | chr5:55653651-55653493 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 178-380 |
| Cow position: | chr5:46646147-46646347 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 24, 47 |
| Conread position: | 178-399 |
| Cow position: | chr5:3965637-3965868 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 58, 161 |
| Conread position: | 178-401 |
| Cow position: | chr5:10920033-10920255 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 204, 133 |
| Conread position: | 178-405 |
| Cow position: | chr5:987875-987647 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 24, 157 |
| Conread position: | 178-405 |
| Cow position: | chr5:10813557-10813329 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 24, 163 |
| Conread position: | 178-405 |
| Cow position: | chr5:12731521-12731294 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 24, 108 |
| Conread position: | 178-405 |
| Cow position: | chr5:26077999-26077772 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 25, 107 |
| Conread position: | 178-405 |
| Cow position: | chr5:32773958-32774186 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 24, 157 |
| Conread position: | 178-405 |
| Cow position: | chr5:35301291-35301519 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 24, 157 |
| Conread position: | 178-405 |
| Cow position: | chr5:46777586-46777814 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 24, 157 |
| Conread position: | 178-405 |
| Cow position: | chr5:46808506-46808724 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 24, 52 |
| Conread position: | 178-405 |
| Cow position: | chr5:59061831-59062057 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 24, 86 |
| Conread position: | 179-394 |
| Cow position: | chr5:34190110-34190324 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 24, 79 |
| Conread position: | 179-405 |
| Cow position: | chr5:10842187-10841960 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 23, 156 |
| Conread position: | 182-400 |
| Cow position: | chr5:46665206-46665434 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 19, 162 |
| Conread position: | 182-401 |
| Cow position: | chr5:48807535-48807316 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 199, 152 |
| Conread position: | 182-402 |
| Cow position: | chr5:49223291-49223074 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 20, 43 |
| Conread position: | 182-405 |
| Cow position: | chr5:27197806-27198030 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 21, 55 |
| Conread position: | 190-405 |
| Cow position: | chr5:45701519-45701730 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 20, 47 |
| Conread position: | 191-398 |
| Cow position: | chr5:34201731-34201527 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 8, 21 |
| Conread position: | 200-377 |
| Cow position: | chr5:28014252-28014424 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 200-405 |
| Cow position: | chr5:18664991-18665187 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 181, 72 |
| Conread position: | 200-405 |
| Cow position: | chr5:26184077-26184282 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 175, 134 |
| Conread position: | 205-405 |
| Cow position: | chr5:4684583-4684384 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 176, 129 |
| Conread position: | 237-401 |
| Cow position: | chr5:23831068-23830903 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 60, 98 |
| Conread position: | 243-405 |
| Cow position: | chr5:13536538-13536700 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 138, 106 |
Show alignments to all cow chromosomes.