Cow genome map
| Conread name: | rpigcf0_002377.y1 |
| Conread position: | 160-401 |
| Cow position: | chr6:51731397-51731635 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 42, 91 |
| Conread position: | 164-405 |
| Cow position: | chr6:66233124-66233358 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 38, 14 |
| Conread position: | 168-362 |
| Cow position: | chr6:7834809-7834998 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 33, 38 |
| Conread position: | 169-405 |
| Cow position: | chr6:39955175-39955403 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 23, 53 |
| Conread position: | 170-334 |
| Cow position: | chr6:15926251-15926085 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 170-394 |
| Cow position: | chr6:15478503-15478718 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 31, 67 |
| Conread position: | 170-395 |
| Cow position: | chr6:10645048-10645268 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 180, 51 |
| Conread position: | 170-405 |
| Cow position: | chr6:40978-40741 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 31, 19 |
| Conread position: | 170-405 |
| Cow position: | chr6:24534009-24534244 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 26, 110 |
| Conread position: | 170-405 |
| Cow position: | chr6:47625385-47625620 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 32, 125 |
| Conread position: | 170-405 |
| Cow position: | chr6:66546810-66547034 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 32, 20 |
| Conread position: | 171-373 |
| Cow position: | chr6:28134233-28134430 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 31, 107 |
| Conread position: | 171-375 |
| Cow position: | chr6:10632870-10633070 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 15, 113 |
| Conread position: | 171-394 |
| Cow position: | chr6:49523510-49523734 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 39, 164 |
| Conread position: | 171-405 |
| Cow position: | chr6:3571918-3572153 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 45, 96 |
| Conread position: | 171-405 |
| Cow position: | chr6:58601805-58602038 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 31, 59 |
| Conread position: | 172-316 |
| Cow position: | chr6:27471900-27472045 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 172-361 |
| Cow position: | chr6:3276043-3275856 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 38, 163 |
| Conread position: | 172-361 |
| Cow position: | chr6:51087267-51087453 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 172-380 |
| Cow position: | chr6:40865996-40865788 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 38, 163 |
| Conread position: | 172-399 |
| Cow position: | chr6:28104536-28104310 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 30, 46 |
| Conread position: | 172-399 |
| Cow position: | chr6:40553257-40553028 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 30, 164 |
| Conread position: | 172-399 |
| Cow position: | chr6:41228765-41228997 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 7, 118 |
| Conread position: | 172-399 |
| Cow position: | chr6:52694351-52694579 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 35, 43 |
| Conread position: | 172-400 |
| Cow position: | chr6:51715857-51716086 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 30, 163 |
| Conread position: | 172-401 |
| Cow position: | chr6:50279-50051 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 30, 163 |
| Conread position: | 172-401 |
| Cow position: | chr6:184216-183988 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 171 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 209, 64 |
| Conread position: | 172-401 |
| Cow position: | chr6:476863-477093 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 30, 163 |
| Conread position: | 172-401 |
| Cow position: | chr6:703538-703766 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 30, 86 |
| Conread position: | 172-401 |
| Cow position: | chr6:914960-915185 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 30, 87 |
| Conread position: | 172-401 |
| Cow position: | chr6:1821298-1821072 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 30, 53 |
| Conread position: | 172-401 |
| Cow position: | chr6:3888187-3887961 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 209, 150 |
| Conread position: | 172-401 |
| Cow position: | chr6:8203517-8203744 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 38, 53 |
| Conread position: | 172-401 |
| Cow position: | chr6:13848396-13848623 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 30, 112 |
| Conread position: | 172-401 |
| Cow position: | chr6:15139849-15139619 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 30, 173 |
| Conread position: | 172-401 |
| Cow position: | chr6:21973995-21974225 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 44, 163 |
| Conread position: | 172-401 |
| Cow position: | chr6:24240732-24240959 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 30, 130 |
| Conread position: | 172-401 |
| Cow position: | chr6:25792431-25792202 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 209, 162 |
| Conread position: | 172-401 |
| Cow position: | chr6:30273569-30273339 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 30, 162 |
| Conread position: | 172-401 |
| Cow position: | chr6:34890798-34890572 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 30, 151 |
| Conread position: | 172-401 |
| Cow position: | chr6:35875380-35875156 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 30, 53 |
| Conread position: | 172-401 |
| Cow position: | chr6:39333549-39333318 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 30, 164 |
| Conread position: | 172-401 |
| Cow position: | chr6:43792244-43792014 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 29, 163 |
| Conread position: | 172-405 |
| Cow position: | chr6:7177963-7177741 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 29, 97 |
| Conread position: | 172-405 |
| Cow position: | chr6:47041884-47041652 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 30, 164 |
| Conread position: | 173-399 |
| Cow position: | chr6:65842941-65843168 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 29, 162 |
| Conread position: | 173-401 |
| Cow position: | chr6:55541930-55541701 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 29, 162 |
| Conread position: | 176-361 |
| Cow position: | chr6:17047390-17047573 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 26, 62 |
| Conread position: | 178-364 |
| Cow position: | chr6:46602912-46602726 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 24, 157 |
| Conread position: | 178-397 |
| Cow position: | chr6:20559769-20559559 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 203, 46 |
| Conread position: | 178-401 |
| Cow position: | chr6:5948449-5948225 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 24, 51 |
| Conread position: | 178-405 |
| Cow position: | chr6:11871324-11871096 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 29, 157 |
| Conread position: | 178-405 |
| Cow position: | chr6:26669531-26669304 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 170 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 24, 157 |
| Conread position: | 178-405 |
| Cow position: | chr6:28703380-28703151 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 21, 158 |
| Conread position: | 178-405 |
| Cow position: | chr6:40276414-40276641 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 21, 95 |
| Conread position: | 178-405 |
| Cow position: | chr6:40379300-40379072 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 24, 157 |
| Conread position: | 178-405 |
| Cow position: | chr6:43619054-43619282 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 21, 12 |
| Conread position: | 178-405 |
| Cow position: | chr6:45587282-45587506 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 24, 156 |
| Conread position: | 178-405 |
| Cow position: | chr6:65820639-65820412 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 24, 124 |
| Conread position: | 179-399 |
| Cow position: | chr6:8759964-8759745 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 23, 86 |
| Conread position: | 180-394 |
| Cow position: | chr6:31199172-31199389 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 24, 57 |
| Conread position: | 200-405 |
| Cow position: | chr6:7139987-7139782 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 181, 134 |
| Conread position: | 200-405 |
| Cow position: | chr6:13310025-13309820 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 41, 36 |
| Conread position: | 200-405 |
| Cow position: | chr6:28490212-28490010 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 181, 30 |
| Conread position: | 202-401 |
| Cow position: | chr6:1410027-1409827 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 147, 132 |
| Conread position: | 202-405 |
| Cow position: | chr6:44262118-44261921 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 179, 48 |
| Conread position: | 205-376 |
| Cow position: | chr6:38272928-38273097 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 36, 31 |
| Conread position: | 217-405 |
| Cow position: | chr6:39374685-39374871 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 165, 66 |
| Conread position: | 239-399 |
| Cow position: | chr6:17243907-17243746 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 18, 57 |
| Conread position: | 242-399 |
| Cow position: | chr6:6158114-6158265 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 47, 28 |
Show alignments to all cow chromosomes.